Desmodium leaf distortion virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000869465.1 |
Isolate |
Mexico: Yucatan |
Release date |
2015/2/13 |
Submitter |
Hernandez-Zepeda,C., Idris,A.M., Carnevali,G., Brown,J.K., Moreno-Valenzuela,O.A. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACTGGATGGCCGCGCGATTTTGGTGTCTTTACTTTTTCTGGTCCAATGAAATTGCGCCTGGCGAGCCTAGATATTTGAAACAACTTAGTGCGCAAGTTGTGAGCGTCTTTATAAATTAAAGACATATAGGGCCACCTTCTTTAGTTCAAAATGCCTAAGCGCGATGCCCCGTGGCGCTCTATGGCTGGGACCTCAAAGGTTAGTCGGGCTGCTAACTATTCTCCTCGTGCAGGTAATGGCCCAAAGTTGAACAGGGCCTCAGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATCTACCGGACTTTGAGGTCCCCTGATGTGCCCAGAGGCTGTGAAGGTCCTTGTAAGGTCCAGTCCTATGAACAGCGCCACGACATATCACACGTCGGGAAGGTCATGTGCATATCTGATGTGACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTCTAGGTAAGGTCTGGATGGATGAGAACATCAAGTTGAAGAATCACACGAACAGTGTGATGTTCTGGTTAGTCAGGGACCGTAGACCCTACGGTACTCCAATGGATTTCGGGCAGGTGTTCAACATGTTCGATAACGAGCCTAGCACTGCCACTGTTAAGAACGATCTCCGTGATCGTTACCGGGTGATGCACAAGTTCTATGCCAAGGTGACAGGTGGACAGTACGCCAGCAATGAACAGGCGATAGTCAAGAGGTTCTGGAGGATCAACACTCATGTGGTCTATAATCATCAGGAGGCTGCCAAGTATGAGAATCATACGGAGAACGCCCTATTATTGTATATGGCATGTACTCATGCCTCTAACCTTGTATATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGATAATGAATTAATAAAATTTGAATTTTATTTCATGATTTTCAAGTACATCATGGACATAACTTCTGGCTGTTGCGAAACGAACAGCCCTAATTACATTGTTTAAGCCAATTATCCCTAATTGGTCCAAATACATATTAACTAACTGTCTAAACCTAGTTAAATAGGTCAACCCAGAAGCTGTCGTCCAAGTCGTCCAGACTTGGAAGTTCAGGTAGGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATTTGTACGGTGTATATCCTGGTGTTGGTGTACAAGGGGTCCTCTACTTTGCACATCTTGAAATAGAGGGGATTTTCTATCTCCCAGATATACACGCCATTCTCTGCCTGATGTGCAGTGATGATTTCCCCTGTGCGTGAATCCATGCCCGGTGCAGTCTATGTGGAAGTAGATGGAGCAACCGCAATCTAAATCAATCCGGCGTCGTCTGACCGCCCTCTTCTTGGCTTGCCTGTGGGCCTTCTTGATAGAGGGCGGATGTGAGGGTGATGAAGATCGCATTCTTCAGAGTCCAGTTCCTGAGTGATGCGTTTTCAGCTTTGTCGAGGAAATCTTTATAGCTGGCACCCTCACCCGGATTGCAAAGCACGATTGAGGGGATCCCTCCTTTAATTTGAACTGGCTTTCCGTATTTGCAATTTGACTGCCAGTTCTTTTGGGCCCCTATGAGTTCTTTCCAGTGCTTTAACTTTAGATATTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCATTCGAGTAGACCCTGTTATTGAAGTCCAAATGTCCACTGAGATAATTATGTGGGCCTAAAGAACGAGCCCACATTGTTTTGCCTGTCCTTGATTCACCTTCCACTATTATACTAATAGGTCTCTCCGGCCGCGCAGCGGAACTCCGACCAAAATAGTCATCTGCCCACTCTTGCATCTCGTCCGGCACGTTAGTGAAAGATGATAGTCTATAGGGAGGAGTCCATGGCTCCGGAGGCTTTGCAAAGAGGCGTTCTATATTAGCCTTGATGTTATGGTAGCTTACAATGAACGTCCTTGGATCTCCGGCCCTGATAATGTCAAGAGCCTCTGCAACACCAGGTGCATTGACGGCGTTATGGAAGACGTCGTCCTTATTTGCCTTTGTTCCGCCAGGCACCTTGTATTGTCCGGATTCACAATAATCACCCTCTTTGGTGATGTAATTCCGGACGGCGTTGGAGTCTTTGGCAGCCTGGACATTTGGGTGAAAGTTGGCAGACCTTCTCGGGTGAGTGAGGTCGAAAAATCTAGCATCCTTGATGTTTGACTTGCCGGAGAGCTGGAGAAGACAGTGGAGGTGAGGGAACCCGTCTGAATGTTCCTCTCTTGCGACTCTGATGTATACTGGTTTGACGACTGACCATGACAGGTTTTGAAGCATCTGAAGAGCTTCATCTTTTGGGATATCACACTGGGGATATGTTAAGAATATATTTCTGGCAGCTAAACGAAAGGTTTTAGGTTTCAGTGGCATATTTGTAATAATAGGAAGAGACACCAGGGGGAGCTCTAAACTTCTCTCCATTATTTTGGTGTCTTGGTGTCATATATATACATAAAGGCTTATGGAGGAATCTTTAGACACCAGGGGTAAAAGCGGCCATCCTATAATATT
ACTGGATGGCCGCGCGATTTTGGTGTTCGGCCCAGGCCCATTGGCGCTGTCCTTGTTGTGCTCCCTTCCCCTTGGTGTGTTCGTTCCCTCCGTCTTTTCCCTGGTGCGTCCTGGGACCCCCCTCTCTCCGTCTTTTACCTCTCATTTTAATTTAAAGAGACTTTAAATTAAATCTGCCTTGTCTTTAGCCAATTTCGAGATTTTGACTGATAGACCTGGCAGCAGTCGACGTGGTCGATTTTGGACCCTGCTTGTATGCTTATGTCGAAATTGAGCTAGAGGTGTACTATACATCTTACGTGGACCATTCACGTTTGACCTGTCGAGCCAAATTAATATTAGCCTAACTGAATCGCTTGTATATATCGGAGATGTAATCACCCATTGGATATCCATATCTGAACATGTACCCGTCCAGATATCGACGTGGTTCTATCTATAATCAACCACGTGGTTACCCTCGTAGCCACGTGTTTAGGCGACAACCAATTGTTAAACGCCACGATGGTAGACGTCGACATATTCTGTCTGGGAAATTACCTGACGAGCCCAAGTTGACGAGCCAAACCATACATGAGAACCAGTATGGCCCAGAGTTTTCCATGGCCCATAACACGTCCGTTTCGACATTCATTAGCTACCCTGATATGGGTAAGTCTTTTCCTAATCGATCTAGGTCGTATATCAAGTTGAAACGGCTTCGTTTCAAGGGAACTGTCAAAGTTGAACGTGTTCATTCCGATGTGAATATGGTCGCTACATCACCTAAGACCGAAGGTGTTTTCTCGCTGGTCATAGTCGTCGACCGCAAACCTCACATCGGACCTTCTGGTGGTCTTCCGTCCTTTGATGAACTATTTGGTGCAAGGATCCACAGTCACGGTAACCTGGCTATAACTCCAGGTATGAAGGAGCGGTTCTATTTACGCCACGTGTTGAAGCGTGTATTATCCGTGGAGAAGGATAGCCTGATGGTCGACATAGAAGGAACCGCCACCCTGTCGAACAGGCGTTTTAATTGTTGGTCCAGTTTTAAGGATCTCGAGGTCGAGTCATGTAAGGGTGTGTATGCTAACATAAGCAAGAACGCCCTGTTAGTCTATTACTGTTGGATGTCCGATACCATGTCTAAAGCATCCACATATGTATCATATGACCTGGATTATATTGGCTGAATAAAGATTTATTATCAATGCAAAATTTATACAAATTTTGACTTTAGAGACATTTTAACTATTTATCAAAAGACTTGAGCTGAGATGAACTACAATTATTCTTAATACATTCTTGGACTGTGGACCTGACAAGTTCGTTTAATTGGGCCACTGACATTGTTATGTTGGACTGAGCCCTCCTTGCTCCAACAATAGACGCAGACTCTCCTGGATCCAGTACGCTTGTTCCCAGCCTATTTAGATCTCGATACGGGTGCAACTCGTTCTCGATCTCTGAGTCAGCATCCGATGGTCCTACTCCTATTGTGCTTCTGGAAGCCCATGATTCTCCGGGCCTGATTTCAATTGGGCCTCGCAAACCTAGTCTTGACATGGATGCACACCGGATGGGCTTCCTCTCCCATCTCCCGTAGTCCACGTGCGAGAAGTCCACATCCTTCTCGGTGAATTGCTTGGATAAGATCTTGACCGTCGGTGCTTTAAATGGGATATCCACCGAGTGTTTTGCCGTGGACAATTTCAGCTTCCCTTTGAATTTGGCGAAGTGGGTCCTTTGATGGACGTTTGTATCAGAAACTCTGTAATAGAGTTTCCAAGGGATTGGGTCTTTCAAGGAGAAGAAGGAAGCTGAGAAGTAGTGGAGATCTATGTTACATCTGATCGGAAATGTCCAGGTTGCCTGTAACGACTCGTTATCCGTCATTCTTTGGTCGTGGATCTCCACTATCACAGTCCCGGCGGCGTTGATCGGTACCTGTTGCCTGTACTCGATTACGCAGTGATCGATTTTCATACAGCTCCGACTGAGTCTTGCCGTTAGTTGAGCCGCCGCTGACGGAAACTGCAGGATTATCTCAGTTAGGTCATGGGAGAGCTGATATTCATCCCTCTGGGACTCTATGTAGTTGTATGCATGAGGAGGATTTGCTAACTGAGAATTCATTTATGAAAATTTGGTCGCGCTAGCGAGATCTGTCTAATTATTTGAAGACTATGTCAAGAGCTTGAGCAAATTCAGTTGGAAATCAATTTCTGGGGAAGACACTTTTTGTGAAAAAGAAGAGTACCGAGGAAGGAGAAGATGAAAACCTAGATCTGACAAGGGTTGGGTTTATCAGAGACCTGACAAGGTTTATATAGAGAACCAGGTGTTTAGTGTTTAGCTTCAGAATTGGCTAATGGCAATCTTGTAATAATAGGTTATGACACCATGGGGAGACACCAGGGGGAGCTCTCAACTTCTCTCCATTATTTTGGTGTCTTGGTGTCATATATATACATAAAGGCTTATGGAGGAATCTATAGACACCAGGGGTAAAAGCGGCCATCCTATAATATT
Gene Information
NCBI Accession
|
YP_794168.1
|
Location
|
151-906 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGCCTAAGCGCGATGCCCCGTGGCGCTCTATGGCTGGGACCTCAAAGGTTAGTCGGGCTGCTAACTATTCTCCTCGTGCAGGTAATGGCCCAAAGTTGAACAGGGCCTCAGAATGGGTTAACAGGCCCATGTATAGGAAGCCCAGGATCTACCGGACTTTGAGGTCCCCTGATGTGCCCAGAGGCTGTGAAGGTCCTTGTAAGGTCCAGTCCTATGAACAGCGCCACGACATATCACACGTCGGGAAGGTCATGTGCATATCTGATGTGACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTATATTCTAGGTAAGGTCTGGATGGATGAGAACATCAAGTTGAAGAATCACACGAACAGTGTGATGTTCTGGTTAGTCAGGGACCGTAGACCCTACGGTACTCCAATGGATTTCGGGCAGGTGTTCAACATGTTCGATAACGAGCCTAGCACTGCCACTGTTAAGAACGATCTCCGTGATCGTTACCGGGTGATGCACAAGTTCTATGCCAAGGTGACAGGTGGACAGTACGCCAGCAATGAACAGGCGATAGTCAAGAGGTTCTGGAGGATCAACACTCATGTGGTCTATAATCATCAGGAGGCTGCCAAGTATGAGAATCATACGGAGAACGCCCTATTATTGTATATGGCATGTACTCATGCCTCTAACCTTGTATATGCAACTCTGAAGATTCGAATCTATTTTTATGATTCGATAATGAATTAA |
Protein Sequence
|
MPKRDAPWRSMAGTSKVSRAANYSPRAGNGPKLNRASEWVNRPMYRKPRIYRTLRSPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYRVMHKFYAKVTGGQYASNEQAIVKRFWRINTHVVYNHQEAAKYENHTENALLLYMACTHASNLVYATLKIRIYFYDSIMN |
NCBI Accession
|
YP_794169.1
|
Location
|
903-1301 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAAATCATCACTGCACATCAGGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATGTGCAAAGTAGAGGACCCCTTGTACACCAACACCAGGATATACACCGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACTTGGACGACAGCTTCTGGGTTGACCTATTTAACTAGGTTTAGACAGTTAGTTAATATGTATTTGGACCAATTAGGGATAATTGGCTTAAACAATGTAATTAGGGCTGTTCGTTTCGCAACAGCCAGAAGTTATGTCCATGATGTACTTGAAAATCATGAAATAAAATTCAAATTTTATTAA |
Protein Sequence
|
MDSRTGEIITAHQAENGVYIWEIENPLYFKMCKVEDPLYTNTRIYTVQIRFNHNLRRALHLHKAYLNFQVWTTWTTASGLTYLTRFRQLVNMYLDQLGIIGLNNVIRAVRFATARSYVHDVLENHEIKFKFY |
NCBI Accession
|
YP_794170.1
|
Location
|
1048-1437 |
Gene Name
|
AC2 |
Protein Name
|
transactivator protein |
Coding Region
|
ATGCGATCTTCATCACCCTCACATCCGCCCTCTATCAAGAAGGCCCACAGGCAAGCCAAGAAGAGGGCGGTCAGACGACGCCGGATTGATTTAGATTGCGGTTGCTCCATCTACTTCCACATAGACTGCACCGGGCATGGATTCACGCACAGGGGAAATCATCACTGCACATCAGGCAGAGAATGGCGTGTATATCTGGGAGATAGAAAATCCCCTCTATTTCAAGATGTGCAAAGTAGAGGACCCCTTGTACACCAACACCAGGATATACACCGTACAAATACGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCCTACCTGAACTTCCAAGTCTGGACGACTTGGACGACAGCTTCTGGGTTGACCTATTTAACTAG |
Protein Sequence
|
MRSSSPSHPPSIKKAHRQAKKRAVRRRRIDLDCGCSIYFHIDCTGHGFTHRGNHHCTSGREWRVYLGDRKSPLFQDVQSRGPLVHQHQDIHRTNTVQPQPEESVASPQSLPELPSLDDLDDSFWVDLFN |
NCBI Accession
|
YP_794171.1
|
Location
|
1349-2428 |
Gene Name
|
AC1 |
Protein Name
|
REP protein |
Coding Region
|
ATGCCACTGAAACCTAAAACCTTTCGTTTAGCTGCCAGAAATATATTCTTAACATATCCCCAGTGTGATATCCCAAAAGATGAAGCTCTTCAGATGCTTCAAAACCTGTCATGGTCAGTCGTCAAACCAGTATACATCAGAGTCGCAAGAGAGGAACATTCAGACGGGTTCCCTCACCTCCACTGTCTTCTCCAGCTCTCCGGCAAGTCAAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCGAGAAGGTCTGCCAACTTTCACCCAAATGTCCAGGCTGCCAAAGACTCCAACGCCGTCCGGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAATACAAGGTGCCTGGCGGAACAAAGGCAAATAAGGACGACGTCTTCCATAACGCCGTCAATGCACCTGGTGTTGCAGAGGCTCTTGACATTATCAGGGCCGGAGATCCAAGGACGTTCATTGTAAGCTACCATAACATCAAGGCTAATATAGAACGCCTCTTTGCAAAGCCTCCGGAGCCATGGACTCCTCCCTATAGACTATCATCTTTCACTAACGTGCCGGACGAGATGCAAGAGTGGGCAGATGACTATTTTGGTCGGAGTTCCGCTGCGCGGCCGGAGAGACCTATTAGTATAATAGTGGAAGGTGAATCAAGGACAGGCAAAACAATGTGGGCTCGTTCTTTAGGCCCACATAATTATCTCAGTGGACATTTGGACTTCAATAACAGGGTCTACTCGAATGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCAATATCTAAAGTTAAAGCACTGGAAAGAACTCATAGGGGCCCAAAAGAACTGGCAGTCAAATTGCAAATACGGAAAGCCAGTTCAAATTAAAGGAGGGATCCCCTCAATCGTGCTTTGCAATCCGGGTGAGGGTGCCAGCTATAAAGATTTCCTCGACAAAGCTGAAAACGCATCACTCAGGAACTGGACTCTGAAGAATGCGATCTTCATCACCCTCACATCCGCCCTCTATCAAGAAGGCCCACAGGCAAGCCAAGAAGAGGGCGGTCAGACGACGCCGGATTGA |
Protein Sequence
|
MPLKPKTFRLAARNIFLTYPQCDIPKDEALQMLQNLSWSVVKPVYIRVAREEHSDGFPHLHCLLQLSGKSNIKDARFFDLTHPRRSANFHPNVQAAKDSNAVRNYITKEGDYCESGQYKVPGGTKANKDDVFHNAVNAPGVAEALDIIRAGDPRTFIVSYHNIKANIERLFAKPPEPWTPPYRLSSFTNVPDEMQEWADDYFGRSSAARPERPISIIVEGESRTGKTMWARSLGPHNYLSGHLDFNNRVYSNEVEYNVIDDVAPQYLKLKHWKELIGAQKNWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKAENASLRNWTLKNAIFITLTSALYQEGPQASQEEGGQTTPD |
NCBI Accession
|
YP_794172.1
|
Location
|
405-1175 |
Gene Name
|
BV1 |
Protein Name
|
BV1 |
Coding Region
|
ATGTACCCGTCCAGATATCGACGTGGTTCTATCTATAATCAACCACGTGGTTACCCTCGTAGCCACGTGTTTAGGCGACAACCAATTGTTAAACGCCACGATGGTAGACGTCGACATATTCTGTCTGGGAAATTACCTGACGAGCCCAAGTTGACGAGCCAAACCATACATGAGAACCAGTATGGCCCAGAGTTTTCCATGGCCCATAACACGTCCGTTTCGACATTCATTAGCTACCCTGATATGGGTAAGTCTTTTCCTAATCGATCTAGGTCGTATATCAAGTTGAAACGGCTTCGTTTCAAGGGAACTGTCAAAGTTGAACGTGTTCATTCCGATGTGAATATGGTCGCTACATCACCTAAGACCGAAGGTGTTTTCTCGCTGGTCATAGTCGTCGACCGCAAACCTCACATCGGACCTTCTGGTGGTCTTCCGTCCTTTGATGAACTATTTGGTGCAAGGATCCACAGTCACGGTAACCTGGCTATAACTCCAGGTATGAAGGAGCGGTTCTATTTACGCCACGTGTTGAAGCGTGTATTATCCGTGGAGAAGGATAGCCTGATGGTCGACATAGAAGGAACCGCCACCCTGTCGAACAGGCGTTTTAATTGTTGGTCCAGTTTTAAGGATCTCGAGGTCGAGTCATGTAAGGGTGTGTATGCTAACATAAGCAAGAACGCCCTGTTAGTCTATTACTGTTGGATGTCCGATACCATGTCTAAAGCATCCACATATGTATCATATGACCTGGATTATATTGGCTGA |
Protein Sequence
|
MYPSRYRRGSIYNQPRGYPRSHVFRRQPIVKRHDGRRRHILSGKLPDEPKLTSQTIHENQYGPEFSMAHNTSVSTFISYPDMGKSFPNRSRSYIKLKRLRFKGTVKVERVHSDVNMVATSPKTEGVFSLVIVVDRKPHIGPSGGLPSFDELFGARIHSHGNLAITPGMKERFYLRHVLKRVLSVEKDSLMVDIEGTATLSNRRFNCWSSFKDLEVESCKGVYANISKNALLVYYCWMSDTMSKASTYVSYDLDYIG |
NCBI Accession
|
YP_794173.1
|
Location
|
1234-2118 |
Gene Name
|
BC1 |
Protein Name
|
movement protein |
Coding Region
|
ATGAATTCTCAGTTAGCAAATCCTCCTCATGCATACAACTACATAGAGTCCCAGAGGGATGAATATCAGCTCTCCCATGACCTAACTGAGATAATCCTGCAGTTTCCGTCAGCGGCGGCTCAACTAACGGCAAGACTCAGTCGGAGCTGTATGAAAATCGATCACTGCGTAATCGAGTACAGGCAACAGGTACCGATCAACGCCGCCGGGACTGTGATAGTGGAGATCCACGACCAAAGAATGACGGATAACGAGTCGTTACAGGCAACCTGGACATTTCCGATCAGATGTAACATAGATCTCCACTACTTCTCAGCTTCCTTCTTCTCCTTGAAAGACCCAATCCCTTGGAAACTCTATTACAGAGTTTCTGATACAAACGTCCATCAAAGGACCCACTTCGCCAAATTCAAAGGGAAGCTGAAATTGTCCACGGCAAAACACTCGGTGGATATCCCATTTAAAGCACCGACGGTCAAGATCTTATCCAAGCAATTCACCGAGAAGGATGTGGACTTCTCGCACGTGGACTACGGGAGATGGGAGAGGAAGCCCATCCGGTGTGCATCCATGTCAAGACTAGGTTTGCGAGGCCCAATTGAAATCAGGCCCGGAGAATCATGGGCTTCCAGAAGCACAATAGGAGTAGGACCATCGGATGCTGACTCAGAGATCGAGAACGAGTTGCACCCGTATCGAGATCTAAATAGGCTGGGAACAAGCGTACTGGATCCAGGAGAGTCTGCGTCTATTGTTGGAGCAAGGAGGGCTCAGTCCAACATAACAATGTCAGTGGCCCAATTAAACGAACTTGTCAGGTCCACAGTCCAAGAATGTATTAAGAATAATTGTAGTTCATCTCAGCTCAAGTCTTTTGATAAATAG |
Protein Sequence
|
MNSQLANPPHAYNYIESQRDEYQLSHDLTEIILQFPSAAAQLTARLSRSCMKIDHCVIEYRQQVPINAAGTVIVEIHDQRMTDNESLQATWTFPIRCNIDLHYFSASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFKAPTVKILSKQFTEKDVDFSHVDYGRWERKPIRCASMSRLGLRGPIEIRPGESWASRSTIGVGPSDADSEIENELHPYRDLNRLGTSVLDPGESASIVGARRAQSNITMSVAQLNELVRSTVQECIKNNCSSSQLKSFDK |