Cucumber chlorotic leaf virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTGGTGTCCTCCTACGTGGCGCAATCCCCCCGTTCCAAATCCCCCGCTCTCTCTCCACAAATTTCGGCCATGTGACTTAAAAATGACAAATAAAGGTGACCAATCATGTCTCGTCCTACGAGACTAGATATTTATTACTTTGCGACCAAGTTGTCGTATAAATGTACGTGCATTGTCATTTTTTCCTTTAATTCAAAATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTACCCGCTCGGTGAACTATTCGCCCCGTGGCGGTATTGGGCCGAAATTCGACAAGGCCTCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGATGTGCCTAAGGGATGTGAAGGGCCTTGTAAGGTTCAACCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAATGGTATTACCCATCGTGTAGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACCAACAGCGTCATCTTCTTCTTGGTCAGAGACAGGAGACCCTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAATGAACCTAGCACTGCAACGGTTAAGATGGACCTACGTGATCGTTTCCAAGTCATGCGCAGGTTCTACGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACATTCGATTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCAACATTGAAAATTCGGATCTATTTTTACGATTCGATCAGCAATTAATAAAATAAGAATTTTATTTCATGATTTTCAAGTACATCATTTACATATGATCTGTCTGTCGCGAAGCGAACAGCTCGAATAACATTATTAATTGAAATAACGCCTATATTGTCTAAGTACAACATGACTAAGCGACTAAATCTATTTAAATACGTCGTCCCAGAAACTCGAAGCAATGTCGTCCAGACTTGGAAATTCAGGAAGGCTTTGTGTAGACCCAGTGCCCTCCTCAGTTTGTGGTTGAACCTTATCTGGACATGGTATATCGTGATCAGGGAGAACGGTGGAACCTCCACCTGGTTTATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGCCACTCTCTGCTTGATGCGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGATTGACGCAATTGATGTGCAGGAATATGGAACAGCCGCAGTTCAGGTCCAACCTTCTACGACGAACAGCTCTCCTCTTCGCTCGTCTATGTTGTGCTTTGATAGAGGGGGGCGTTGATGGTGACGAATTTCGCATTATGAAGCGTCCACGCTTTTAGTGATGCGTTTTCTTCTTTGTCTAGGAAGTCTTTATATGAAGCCCCCTCTCCCGGGTTACAAAGCACAATGGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCTCTTTGGGACCCTATTAGCTCTTTCCAGTGCTTTAGCTTGAGATAATGTGGACTAACGTCATCAATGACGTTATACTCCACATCGTTTGAATAGACCCGAGGATTAAAGTCCAGGTGACCAGACAAGTAATTATGAACACCTAAAGCACGAGCCCACATCGTTTTTCCCGTCCTTGAATCACCCTCAATGATGATGCTAATAGGTCTCTCTGGCCGCGCAGCGGCATCTCTCCCGAAATAGACATCAGCCCACCTTTGCATCTCCACGGGGACGTTAGTGAATGTGGAGAGTTGAAACGGAGGAGTCCATGGCTCCGGAGCCTTATGAAAGAGGCGTTCGATGTTAGCCTTGACATGATGATAACTAACTATGAACGTCCTTGGATCACCGACCTTGATAATGTCGAGAGCCTCTCCCGCACTTCCTGCATTGACGGCGTTGCGGTAGACGTCGTCTTTGTTGGCCTTTGAACTCCCAGACACTTTGTACTGTCCGGATTCACAATAATCACCCTCTTTGGTGATGTAGTTCTTGACGGCATTGGCGTCTTTGGCTGCCTGTATGTTTGGGTGAAAACAGGCAGACCTTCTTGGGTGAGTAAGGTCGAAAAATCTAGCATCCTTGATGTTAGATTTGTCTGATAATTGGACGAGACGGTGTAAGTGTGGGAGTCCGTCGGAATGTTCCTCTCGTGCGACTCTGATATACGTTGGTTTGACGACTGACCAGTGAAGATGCTGAAGCATCTGAAGAGCTTCATCTTTGGATATGTCGCACTGAGGATATGTTAAGAAAGTGTTTTTGGCAGTTAAACGAAATGAACTGGGGTTCCGTGGCATTTTTGTGAATATGAGCCAGGACACCAGGGGGAGCTCTCTCTAAAACTTTATTTTGCTGGTGTCCTGGTGTCCCATTTATACTAAAACCCTCTGGGGGACACCAGGGGCAAAAGCGGCCATCCGTAATAATATT
Gene Information
NCBI Accession
|
YP_010087782.1
|
Location
|
217-972 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTACCCGCTCGGTGAACTATTCGCCCCGTGGCGGTATTGGGCCGAAATTCGACAAGGCCTCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGATGTGCCTAAGGGATGTGAAGGGCCTTGTAAGGTTCAACCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAATGGTATTACCCATCGTGTAGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACCAACAGCGTCATCTTCTTCTTGGTCAGAGACAGGAGACCCTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAATGAACCTAGCACTGCAACGGTTAAGATGGACCTACGTGATCGTTTCCAAGTCATGCGCAGGTTCTACGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACATTCGATTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCAACATTGAAAATTCGGATCTATTTTTACGATTCGATCAGCAATTAA |
Protein Sequence
|
MPKRDAPWRTMAGTSKVTRSVNYSPRGGIGPKFDKASAWVNRPMYRKPRIYRALRGPDVPKGCEGPCKVQPFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVIFFLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKMDLRDRFQVMRRFYAKVTGGQYASNEQALVRRFWRVNIRFVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN |
NCBI Accession
|
YP_010087783.1
|
Location
|
969-1367 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACGATATACCATGTCCAGATAAGGTTCAACCACAAACTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAGATTTAGTCGCTTAGTCATGTTGTACTTAGACAATATAGGCGTTATTTCAATTAATAATGTTATTCGAGCTGTTCGCTTCGCGACAGACAGATCATATGTAAATGATGTACTTGAAAATCATGAAATAAAATTCTTATTTTATTAA |
Protein Sequence
|
MDSRTGEPITAHQAESGVFIWEVPNPLYFKINQVEVPPFSLITIYHVQIRFNHKLRRALGLHKAFLNFQVWTTLLRVSGTTYLNRFSRLVMLYLDNIGVISINNVIRAVRFATDRSYVNDVLENHEIKFLFY |
NCBI Accession
|
YP_010087784.1
|
Location
|
1114-1503 |
Gene Name
|
AC2 |
Protein Name
|
transactivator protein |
Coding Region
|
ATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAGACGAGCGAAGAGGAGAGCTGTTCGTCGTAGAAGGTTGGACCTGAACTGCGGCTGTTCCATATTCCTGCACATCAATTGCGTCAATCATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACGATATACCATGTCCAGATAAGGTTCAACCACAAACTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAG |
Protein Sequence
|
MRNSSPSTPPSIKAQHRRAKRRAVRRRRLDLNCGCSIFLHINCVNHGFTHRGTHHCASSREWRFYLGGSKSPLFQDKPGGGSTVLPDHDIPCPDKVQPQTEEGTGSTQSLPEFPSLDDIASSFWDDVFK |
NCBI Accession
|
YP_010087785.1
|
Location
|
1454-2494 |
Gene Name
|
AC1 |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGCCACGGAACCCCAGTTCATTTCGTTTAACTGCCAAAAACACTTTCTTAACATATCCTCAGTGCGACATATCCAAAGATGAAGCTCTTCAGATGCTTCAGCATCTTCACTGGTCAGTCGTCAAACCAACGTATATCAGAGTCGCACGAGAGGAACATTCCGACGGACTCCCACACTTACACCGTCTCGTCCAATTATCAGACAAATCTAACATCAAGGATGCTAGATTTTTCGACCTTACTCACCCAAGAAGGTCTGCCTGTTTTCACCCAAACATACAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAAGTGTCTGGGAGTTCAAAGGCCAACAAAGACGACGTCTACCGCAACGCCGTCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGTGATCCAAGGACGTTCATAGTTAGTTATCATCATGTCAAGGCTAACATCGAACGCCTCTTTCATAAGGCTCCGGAGCCATGGACTCCTCCGTTTCAACTCTCCACATTCACTAACGTCCCCGTGGAGATGCAAAGGTGGGCTGATGTCTATTTCGGGAGAGATGCCGCTGCGCGGCCAGAGAGACCTATTAGCATCATCATTGAGGGTGATTCAAGGACGGGAAAAACGATGTGGGCTCGTGCTTTAGGTGTTCATAATTACTTGTCTGGTCACCTGGACTTTAATCCTCGGGTCTATTCAAACGATGTGGAGTATAACGTCATTGATGACGTTAGTCCACATTATCTCAAGCTAAAGCACTGGAAAGAGCTAATAGGGTCCCAAAGAGACTGGCAGTCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGAGGTATCCCATCCATTGTGCTTTGTAACCCGGGAGAGGGGGCTTCATATAAAGACTTCCTAGACAAAGAAGAAAACGCATCACTAAAAGCGTGGACGCTTCATAATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAG |
Protein Sequence
|
MPRNPSSFRLTAKNTFLTYPQCDISKDEALQMLQHLHWSVVKPTYIRVAREEHSDGLPHLHRLVQLSDKSNIKDARFFDLTHPRRSACFHPNIQAAKDANAVKNYITKEGDYCESGQYKVSGSSKANKDDVYRNAVNAGSAGEALDIIKVGDPRTFIVSYHHVKANIERLFHKAPEPWTPPFQLSTFTNVPVEMQRWADVYFGRDAAARPERPISIIIEGDSRTGKTMWARALGVHNYLSGHLDFNPRVYSNDVEYNVIDDVSPHYLKLKHWKELIGSQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKAWTLHNAKFVTINAPLYQSTT |
NCBI Accession
|
YP_010087786.1
|
Location
|
2023-2415 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGAAGCTCTTCAGATGCTTCAGCATCTTCACTGGTCAGTCGTCAAACCAACGTATATCAGAGTCGCACGAGAGGAACATTCCGACGGACTCCCACACTTACACCGTCTCGTCCAATTATCAGACAAATCTAACATCAAGGATGCTAGATTTTTCGACCTTACTCACCCAAGAAGGTCTGCCTGTTTTCACCCAAACATACAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAAGTGTCTGGGAGTTCAAAGGCCAACAAAGACGACGTCTACCGCAACGCCGTCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGTGATCCAAGGACGTTCATAG |
Protein Sequence
|
MKLFRCFSIFTGQSSNQRISESHERNIPTDSHTYTVSSNYQTNLTSRMLDFSTLLTQEGLPVFTQTYRQPKTPMPSRTTSPKRVIIVNPDSTKCLGVQRPTKTTSTATPSMQEVRERLSTLSRSVIQGRS |