Cucumber chlorotic leaf virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_018587415.1
Isolate Mexico
Release date 2021/6/1
Submitter Cardenas-Conejo,Y.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055582
ACCGGATGGCCGCGATTTTTTGGTGTCCTCCTACGTGGCGCAATCCCCCCGTTCCAAATCCCCCGCTCTCTCTCCACAAATTTCGGCCATGTGACTTAAAAATGACAAATAAAGGTGACCAATCATGTCTCGTCCTACGAGACTAGATATTTATTACTTTGCGACCAAGTTGTCGTATAAATGTACGTGCATTGTCATTTTTTCCTTTAATTCAAAATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTACCCGCTCGGTGAACTATTCGCCCCGTGGCGGTATTGGGCCGAAATTCGACAAGGCCTCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGATGTGCCTAAGGGATGTGAAGGGCCTTGTAAGGTTCAACCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAATGGTATTACCCATCGTGTAGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACCAACAGCGTCATCTTCTTCTTGGTCAGAGACAGGAGACCCTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAATGAACCTAGCACTGCAACGGTTAAGATGGACCTACGTGATCGTTTCCAAGTCATGCGCAGGTTCTACGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACATTCGATTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCAACATTGAAAATTCGGATCTATTTTTACGATTCGATCAGCAATTAATAAAATAAGAATTTTATTTCATGATTTTCAAGTACATCATTTACATATGATCTGTCTGTCGCGAAGCGAACAGCTCGAATAACATTATTAATTGAAATAACGCCTATATTGTCTAAGTACAACATGACTAAGCGACTAAATCTATTTAAATACGTCGTCCCAGAAACTCGAAGCAATGTCGTCCAGACTTGGAAATTCAGGAAGGCTTTGTGTAGACCCAGTGCCCTCCTCAGTTTGTGGTTGAACCTTATCTGGACATGGTATATCGTGATCAGGGAGAACGGTGGAACCTCCACCTGGTTTATCTTGAAATAGAGGGGATTTGGAACCTCCCAGATAAAAACGCCACTCTCTGCTTGATGCGCAGTGATGGGTTCCCCGGTGCGTGAATCCATGATTGACGCAATTGATGTGCAGGAATATGGAACAGCCGCAGTTCAGGTCCAACCTTCTACGACGAACAGCTCTCCTCTTCGCTCGTCTATGTTGTGCTTTGATAGAGGGGGGCGTTGATGGTGACGAATTTCGCATTATGAAGCGTCCACGCTTTTAGTGATGCGTTTTCTTCTTTGTCTAGGAAGTCTTTATATGAAGCCCCCTCTCCCGGGTTACAAAGCACAATGGATGGGATACCTCCTTTAATTTGAACCGGCTTTCCATATTTACAGTTGGACTGCCAGTCTCTTTGGGACCCTATTAGCTCTTTCCAGTGCTTTAGCTTGAGATAATGTGGACTAACGTCATCAATGACGTTATACTCCACATCGTTTGAATAGACCCGAGGATTAAAGTCCAGGTGACCAGACAAGTAATTATGAACACCTAAAGCACGAGCCCACATCGTTTTTCCCGTCCTTGAATCACCCTCAATGATGATGCTAATAGGTCTCTCTGGCCGCGCAGCGGCATCTCTCCCGAAATAGACATCAGCCCACCTTTGCATCTCCACGGGGACGTTAGTGAATGTGGAGAGTTGAAACGGAGGAGTCCATGGCTCCGGAGCCTTATGAAAGAGGCGTTCGATGTTAGCCTTGACATGATGATAACTAACTATGAACGTCCTTGGATCACCGACCTTGATAATGTCGAGAGCCTCTCCCGCACTTCCTGCATTGACGGCGTTGCGGTAGACGTCGTCTTTGTTGGCCTTTGAACTCCCAGACACTTTGTACTGTCCGGATTCACAATAATCACCCTCTTTGGTGATGTAGTTCTTGACGGCATTGGCGTCTTTGGCTGCCTGTATGTTTGGGTGAAAACAGGCAGACCTTCTTGGGTGAGTAAGGTCGAAAAATCTAGCATCCTTGATGTTAGATTTGTCTGATAATTGGACGAGACGGTGTAAGTGTGGGAGTCCGTCGGAATGTTCCTCTCGTGCGACTCTGATATACGTTGGTTTGACGACTGACCAGTGAAGATGCTGAAGCATCTGAAGAGCTTCATCTTTGGATATGTCGCACTGAGGATATGTTAAGAAAGTGTTTTTGGCAGTTAAACGAAATGAACTGGGGTTCCGTGGCATTTTTGTGAATATGAGCCAGGACACCAGGGGGAGCTCTCTCTAAAACTTTATTTTGCTGGTGTCCTGGTGTCCCATTTATACTAAAACCCTCTGGGGGACACCAGGGGCAAAAGCGGCCATCCGTAATAATATT

Gene Information

NCBI Accession YP_010087782.1
Location 217-972
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCTAAGCGGGACGCCCCATGGCGTACTATGGCGGGGACCTCAAAGGTTACCCGCTCGGTGAACTATTCGCCCCGTGGCGGTATTGGGCCGAAATTCGACAAGGCCTCTGCTTGGGTTAACAGACCCATGTATAGGAAGCCCAGAATCTATCGGGCGCTTAGAGGACCTGATGTGCCTAAGGGATGTGAAGGGCCTTGTAAGGTTCAACCCTTTGAACAGCGTCATGATATTTCCCATGTTGGTAAGGTCATGTGTATATCCGATGTCACACGTGGTAATGGTATTACCCATCGTGTAGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATACTAGGCAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACCAACAGCGTCATCTTCTTCTTGGTCAGAGACAGGAGACCCTATGGAACGCCTATGGATTTTGGCCAAGTGTTCAACATGTTCGACAATGAACCTAGCACTGCAACGGTTAAGATGGACCTACGTGATCGTTTCCAAGTCATGCGCAGGTTCTACGCTAAGGTGACTGGTGGTCAATATGCTAGCAACGAGCAGGCATTGGTTAGGCGATTCTGGAGAGTCAACATTCGATTTGTCTATAACCACCAGGAAGCCGCTAAGTACGAGAATCATACTGAGAACGCCCTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCCGTGTATGCAACATTGAAAATTCGGATCTATTTTTACGATTCGATCAGCAATTAA
Protein Sequence MPKRDAPWRTMAGTSKVTRSVNYSPRGGIGPKFDKASAWVNRPMYRKPRIYRALRGPDVPKGCEGPCKVQPFEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVIFFLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKMDLRDRFQVMRRFYAKVTGGQYASNEQALVRRFWRVNIRFVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSISN

NCBI Accession YP_010087783.1
Location 969-1367
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACGATATACCATGTCCAGATAAGGTTCAACCACAAACTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAGATTTAGTCGCTTAGTCATGTTGTACTTAGACAATATAGGCGTTATTTCAATTAATAATGTTATTCGAGCTGTTCGCTTCGCGACAGACAGATCATATGTAAATGATGTACTTGAAAATCATGAAATAAAATTCTTATTTTATTAA
Protein Sequence MDSRTGEPITAHQAESGVFIWEVPNPLYFKINQVEVPPFSLITIYHVQIRFNHKLRRALGLHKAFLNFQVWTTLLRVSGTTYLNRFSRLVMLYLDNIGVISINNVIRAVRFATDRSYVNDVLENHEIKFLFY

NCBI Accession YP_010087784.1
Location 1114-1503
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAGACGAGCGAAGAGGAGAGCTGTTCGTCGTAGAAGGTTGGACCTGAACTGCGGCTGTTCCATATTCCTGCACATCAATTGCGTCAATCATGGATTCACGCACCGGGGAACCCATCACTGCGCATCAAGCAGAGAGTGGCGTTTTTATCTGGGAGGTTCCAAATCCCCTCTATTTCAAGATAAACCAGGTGGAGGTTCCACCGTTCTCCCTGATCACGATATACCATGTCCAGATAAGGTTCAACCACAAACTGAGGAGGGCACTGGGTCTACACAAAGCCTTCCTGAATTTCCAAGTCTGGACGACATTGCTTCGAGTTTCTGGGACGACGTATTTAAATAG
Protein Sequence MRNSSPSTPPSIKAQHRRAKRRAVRRRRLDLNCGCSIFLHINCVNHGFTHRGTHHCASSREWRFYLGGSKSPLFQDKPGGGSTVLPDHDIPCPDKVQPQTEEGTGSTQSLPEFPSLDDIASSFWDDVFK

NCBI Accession YP_010087785.1
Location 1454-2494
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGCCACGGAACCCCAGTTCATTTCGTTTAACTGCCAAAAACACTTTCTTAACATATCCTCAGTGCGACATATCCAAAGATGAAGCTCTTCAGATGCTTCAGCATCTTCACTGGTCAGTCGTCAAACCAACGTATATCAGAGTCGCACGAGAGGAACATTCCGACGGACTCCCACACTTACACCGTCTCGTCCAATTATCAGACAAATCTAACATCAAGGATGCTAGATTTTTCGACCTTACTCACCCAAGAAGGTCTGCCTGTTTTCACCCAAACATACAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAAGTGTCTGGGAGTTCAAAGGCCAACAAAGACGACGTCTACCGCAACGCCGTCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGTGATCCAAGGACGTTCATAGTTAGTTATCATCATGTCAAGGCTAACATCGAACGCCTCTTTCATAAGGCTCCGGAGCCATGGACTCCTCCGTTTCAACTCTCCACATTCACTAACGTCCCCGTGGAGATGCAAAGGTGGGCTGATGTCTATTTCGGGAGAGATGCCGCTGCGCGGCCAGAGAGACCTATTAGCATCATCATTGAGGGTGATTCAAGGACGGGAAAAACGATGTGGGCTCGTGCTTTAGGTGTTCATAATTACTTGTCTGGTCACCTGGACTTTAATCCTCGGGTCTATTCAAACGATGTGGAGTATAACGTCATTGATGACGTTAGTCCACATTATCTCAAGCTAAAGCACTGGAAAGAGCTAATAGGGTCCCAAAGAGACTGGCAGTCCAACTGTAAATATGGAAAGCCGGTTCAAATTAAAGGAGGTATCCCATCCATTGTGCTTTGTAACCCGGGAGAGGGGGCTTCATATAAAGACTTCCTAGACAAAGAAGAAAACGCATCACTAAAAGCGTGGACGCTTCATAATGCGAAATTCGTCACCATCAACGCCCCCCTCTATCAAAGCACAACATAG
Protein Sequence MPRNPSSFRLTAKNTFLTYPQCDISKDEALQMLQHLHWSVVKPTYIRVAREEHSDGLPHLHRLVQLSDKSNIKDARFFDLTHPRRSACFHPNIQAAKDANAVKNYITKEGDYCESGQYKVSGSSKANKDDVYRNAVNAGSAGEALDIIKVGDPRTFIVSYHHVKANIERLFHKAPEPWTPPFQLSTFTNVPVEMQRWADVYFGRDAAARPERPISIIIEGDSRTGKTMWARALGVHNYLSGHLDFNPRVYSNDVEYNVIDDVSPHYLKLKHWKELIGSQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENASLKAWTLHNAKFVTINAPLYQSTT

NCBI Accession YP_010087786.1
Location 2023-2415
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAAGCTCTTCAGATGCTTCAGCATCTTCACTGGTCAGTCGTCAAACCAACGTATATCAGAGTCGCACGAGAGGAACATTCCGACGGACTCCCACACTTACACCGTCTCGTCCAATTATCAGACAAATCTAACATCAAGGATGCTAGATTTTTCGACCTTACTCACCCAAGAAGGTCTGCCTGTTTTCACCCAAACATACAGGCAGCCAAAGACGCCAATGCCGTCAAGAACTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACAGTACAAAGTGTCTGGGAGTTCAAAGGCCAACAAAGACGACGTCTACCGCAACGCCGTCAATGCAGGAAGTGCGGGAGAGGCTCTCGACATTATCAAGGTCGGTGATCCAAGGACGTTCATAG
Protein Sequence MKLFRCFSIFTGQSSNQRISESHERNIPTDSHTYTVSSNYQTNLTSRMLDFSTLLTQEGLPVFTQTYRQPKTPMPSRTTSPKRVIIVNPDSTKCLGVQRPTKTTSTATPSMQEVRERLSTLSRSVIQGRS