Crassocephalum yellow vein virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000869725.1 |
Isolate |
China |
Release date |
2015/2/13 |
Submitter |
Dong,J.H., Zhang,Z.K., Ding,M., Fang,Q., Zhou,H. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTATAAAGTGGTCCCCACCACTAACAAATGTCCCCCAATTAGAACGCTTCCTCAAAGCTTAATTATTAAATGGTCCCCTATAAATACTTGGTCCCTACGTATTCACGTTAAAGAAATGTGGGATCCTCTTTTGAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGATTAAATCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGCACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCCAGATCATGGGCGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAATCTTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTCCTATGTTTGTCCGACGTTACGAGGGGAAATGGTTTGACTCATCGGGTTGGTAAACGTTTTTGTGTCAAGTCTCTGTATTTTGTCGGTAAGATCTGGATGGACGAGAACATCAAGGTTAAGAACCACACTAACACCGTTTTGTTCTGGATCGTCCGGGACCGGCGACCCAGTGGTACCCCCAATGATTTTCAACAGGTCTTTAATGTGTATGATAATGAACCGTCTACTGCGACTGTTAAGGATGATCAGCGTGACCGCTATCAAGTCTTGCGAAGATTTCAATCAACGGTGACTGGTGGACGGTATGCTGCTAAGGAACAGGCGATAATTAGAGGATTTTATCGTGTAAATAATTATGTAGTGTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACCCATGCCTCTAATCCTGTGTATGCCACTTTGAAAGTCAGGAGTTATTTTTATGACTCAGTGACTAATTAATAAAGATTAAATTTTATTGAATAAGATTGGTCTACATATACAATGTGTTCTAATACATTCCATAATACATGATCAACCGTACGTATTACATTATTCAAACTAATTACACCCAAATTATTAAGAAACTTCAAAACTTGTGTCCTAAATACTCTTAAGAAACGACCAGTCTGAGGCTGTGAAGTCATCCAGATTCGGTAGACTAGAAAACACTTGTGTATCCCCAACGCTTTCCGCAGGTTGTAGTTGAACTGTATTTGGATGGTGATTATGTCTTCTTTCATGAGAAATGGACGGTTCTGGTGATTTATTATCTTGAAATAAAGGGGATTTTTGACCGTCCAGATATATACGCCACTCTCTGCTTGAGCTGCAGTGATAGCTTCCCCTGTGCGTGAATCCATGATCGTGACAGCCCAGTGCAATGAAGTATGAACAGCCACAAGGGAGATCAACTCGACGTCGTCTGGTTGCCTTCTTGGCGTTGCGGTGTTGCACCTTGATAGGAACCGGAGTAGAGTGGGCCTTGGAGGGTGACGAAGATCGCATTCTTTATTGCCCAATTTTTAAGTGCGTTGTTCTTTTCTTCATCCAGGAATTCTTTATAGCTGGAAGTGGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAACTGGCTTTCCGTATTTAGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGGTAGTGCGGATCTACGTCATCAATGACGTTGAACCAGGCATCATTGCTGTACACTTTAGGGCTCAGATCTAGATGTCCACACAAATAATTGTGTGGTCCTAATGACCTGGCCCACATGGTCTTCCCCGTCCTGCTATCACCCTCTATGACTATACTTACCGGTCTCAATGGCCGCGCAGCGGAACTGACGACATTGTCGGCAGCCCATTCATCAAGTTCTTCTGGAACTTGGTCAAAAGAAGAAGAAGAAAATGGAGAAATATATTCCTCTAATGGAGGAGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGGGCCTTTTCCCTCAATATATTGAGGGCCGATGTTTTGGACCCCGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCGTCCATCGATCTGGAAAATTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTATGATTTAACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTTTGGGGATATGAGATCGAAGAATCTTTGATTTTTACACTGGAATTTCCCTTCGAACTGGATGAGGATATGCAGGTGAGGAGTCCCATCTTCGTGTAGTTCTCTGCAGATTCTGATGAATAATTTAGTAATTGGGGTTTCTAGGGCTTTAATTTGGGAAAGTGCTTCCTCTTTGGTAAGAGAACAGTGTGGGTATGTGAGGAAATAGTTTTTGGCATTTATTCTGAATTTATTAGGAGGAGCCATTGACTGGTCAATTGGTGTCTCTCAAACTTGGCTACGCAATTGGTGTCTGGGGTCTTATTTATATGTGGACACCAAATGGCATAATTGTAAATTCTAAAGTTATATTCAAAATTCAAAATCTAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_001004146.1
|
Location
|
136-492 |
Gene Name
|
AV2 |
Protein Name
|
pre-coat protein |
Coding Region
|
ATGTGGGATCCTCTTTTGAACGAGTTTCCCGAAACCGTTCACGGCTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGATTAAATCGCCTGACACATTAGGGCACGATTTAATTAGGGATTTAATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGCACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCCAGATCATGGGCGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAG |
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAVKYLQLVEKIKSPDTLGHDLIRDLISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSQIMGEQAHEQKAQDVQDVQKPRCP |
NCBI Accession
|
YP_001004147.1
|
Location
|
296-1066 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGCACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCCAGATCATGGGCGAACAGGCCCATGAACAGAAAGCCCAAGATGTACAGGATGTACAGAAGCCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAATCTTTTGATGCTAAGAACGATATTGGTCACATGGGTAAGGTCCTATGTTTGTCCGACGTTACGAGGGGAAATGGTTTGACTCATCGGGTTGGTAAACGTTTTTGTGTCAAGTCTCTGTATTTTGTCGGTAAGATCTGGATGGACGAGAACATCAAGGTTAAGAACCACACTAACACCGTTTTGTTCTGGATCGTCCGGGACCGGCGACCCAGTGGTACCCCCAATGATTTTCAACAGGTCTTTAATGTGTATGATAATGAACCGTCTACTGCGACTGTTAAGGATGATCAGCGTGACCGCTATCAAGTCTTGCGAAGATTTCAATCAACGGTGACTGGTGGACGGTATGCTGCTAAGGAACAGGCGATAATTAGAGGATTTTATCGTGTAAATAATTATGTAGTGTACAATCACCAGGAAGCTGGGAAGTACGAGAACCATACTGAAAATGCTTTGTTGTTGTATATGGCATGTACCCATGCCTCTAATCCTGTGTATGCCACTTTGAAAGTCAGGAGTTATTTTTATGACTCAGTGACTAATTAA |
Protein Sequence
|
MSKRPADIIISTPASKARRRLNFDSPYVSRAAAPIVRVTKARSWANRPMNRKPKMYRMYRSPDVPRGCEGPCKVQSFDAKNDIGHMGKVLCLSDVTRGNGLTHRVGKRFCVKSLYFVGKIWMDENIKVKNHTNTVLFWIVRDRRPSGTPNDFQQVFNVYDNEPSTATVKDDQRDRYQVLRRFQSTVTGGRYAAKEQAIIRGFYRVNNYVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKVRSYFYDSVTN |
NCBI Accession
|
YP_001004148.1
|
Location
|
1063-1467 |
Gene Name
|
AC3 |
Protein Name
|
AC3 protein |
Coding Region
|
ATGGATTCACGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTTTATTTCAAGATAATAAATCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCGTTGGGGATACACAAGTGTTTTCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGGACACAAGTTTTGAAGTTTCTTAATAATTTGGGTGTAATTAGTTTGAATAATGTAATACGTACGGTTGATCATGTATTATGGAATGTATTAGAACACATTGTATATGTAGACCAATCTTATTCAATAAAATTTAATCTTTATTAA |
Protein Sequence
|
MDSRTGEAITAAQAESGVYIWTVKNPLYFKIINHQNRPFLMKEDIITIQIQFNYNLRKALGIHKCFLVYRIWMTSQPQTGRFLRVFRTQVLKFLNNLGVISLNNVIRTVDHVLWNVLEHIVYVDQSYSIKFNLY |
NCBI Accession
|
YP_001004149.1
|
Location
|
1208-1612 |
Gene Name
|
AC2 |
Protein Name
|
AC2 protein |
Coding Region
|
ATGCGATCTTCGTCACCCTCCAAGGCCCACTCTACTCCGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAGGCAACCAGACGACGTCGAGTTGATCTCCCTTGTGGCTGTTCATACTTCATTGCACTGGGCTGTCACGATCATGGATTCACGCACAGGGGAAGCTATCACTGCAGCTCAAGCAGAGAGTGGCGTATATATCTGGACGGTCAAAAATCCCCTTTATTTCAAGATAATAAATCACCAGAACCGTCCATTTCTCATGAAAGAAGACATAATCACCATCCAAATACAGTTCAACTACAACCTGCGGAAAGCGTTGGGGATACACAAGTGTTTTCTAGTCTACCGAATCTGGATGACTTCACAGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
Protein Sequence
|
MRSSSPSKAHSTPVPIKVQHRNAKKATRRRRVDLPCGCSYFIALGCHDHGFTHRGSYHCSSSREWRIYLDGQKSPLFQDNKSPEPSISHERRHNHHPNTVQLQPAESVGDTQVFSSLPNLDDFTASDWSFLKSI |
NCBI Accession
|
YP_001004150.1
|
Location
|
1515-2600 |
Gene Name
|
AC1 |
Protein Name
|
AC1 protein |
Coding Region
|
ATGGCTCCTCCTAATAAATTCAGAATAAATGCCAAAAACTATTTCCTCACATACCCACACTGTTCTCTTACCAAAGAGGAAGCACTTTCCCAAATTAAAGCCCTAGAAACCCCAATTACTAAATTATTCATCAGAATCTGCAGAGAACTACACGAAGATGGGACTCCTCACCTGCATATCCTCATCCAGTTCGAAGGGAAATTCCAGTGTAAAAATCAAAGATTCTTCGATCTCATATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAATCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAATTTTCCAGATCGATGGACGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCGGGGTCCAAAACATCGGCCCTCAATATATTGAGGGAAAAGGCCCCTAAAGATTTTGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACTCCTCCATTAGAGGAATATATTTCTCCATTTTCTTCTTCTTCTTTTGACCAAGTTCCAGAAGAACTTGATGAATGGGCTGCCGACAATGTCGTCAGTTCCGCTGCGCGGCCATTGAGACCGGTAAGTATAGTCATAGAGGGTGATAGCAGGACGGGGAAGACCATGTGGGCCAGGTCATTAGGACCACACAATTATTTGTGTGGACATCTAGATCTGAGCCCTAAAGTGTACAGCAATGATGCCTGGTTCAACGTCATTGATGACGTAGATCCGCACTACCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACTAAATACGGAAAGCCAGTTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCCACTTCCAGCTATAAAGAATTCCTGGATGAAGAAAAGAACAACGCACTTAAAAATTGGGCAATAAAGAATGCGATCTTCGTCACCCTCCAAGGCCCACTCTACTCCGGTTCCTATCAAGGTGCAACACCGCAACGCCAAGAAGGCAACCAGACGACGTCGAGTTGA |
Protein Sequence
|
MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKALETPITKLFIRICRELHEDGTPHLHILIQFEGKFQCKNQRFFDLISPNRSAHFHPNIQGAKSSTDVKSYMEKDGDVLDHGIFQIDGRSARGGCQSANDAYAEAINSGSKTSALNILREKAPKDFVLQFHNLNSNLDRIFTPPLEEYISPFSSSSFDQVPEELDEWAADNVVSSAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPTSSYKEFLDEEKNNALKNWAIKNAIFVTLQGPLYSGSYQGATPQRQEGNQTTSS |
NCBI Accession
|
YP_001004151.1
|
Location
|
2150-2443 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGACTCCTCACCTGCATATCCTCATCCAGTTCGAAGGGAAATTCCAGTGTAAAAATCAAAGATTCTTCGATCTCATATCCCCAAACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTTAAATCATACATGGAAAAAGACGGAGACGTGCTTGATCATGGAATTTTCCAGATCGATGGACGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCGGGGTCCAAAACATCGGCCCTCAATATATTGA |
Protein Sequence
|
MGLLTCISSSSSKGNSSVKIKDSSISYPQTGQHISIRTFRELKAQQMLNHTWKKTETCLIMEFSRSMDDRLEEVANLPTTHMPRQSIRGPKHRPSIY |