Cowpea golden mosaic virus


Basic Information

Genus Begomovirus
Isolate Nigeria
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

AF029217
ACCTGAGGGCCGCTTTCGGTGTACCCCACGCACCAATCAGGATGCGCCATTTGCGCTTATTTATTAACTGGGCCTCTATATATTGGGCTTTGTTGTGTATTGGATTTGCACCATGTTTAACCCACTAACTGAACCCCTCCCAGTTACTCCTCACGGTTTGATGTGTATGTTGGCTTTGAAATATTTGCAGGAGTTCGAGAAATCTGTACATTTGACTCCGTGTGATAATACTGAGTTGTTGTTACTCCGCCGTGTTATTCGTGCAAGGACTTACGATGAAGCGAAGCGCCGATACCATATATTCCACACCTTCCAAGGCTCGAAGGAGGTTGACGTTCGACACCCCTCGTGCGACTCCTGCGTCCTTAGGGCGTTCCAACAAAAGGCGGGCTTGGGAGAACCGGCCCATGAACCGCAAGCCCATGATGTACCGGCTTTGGAGGAGTCCTGATGTTCCGTATGGTTGTGAGGGTCCATGTAAGGTTCAGTCTTTCGAGGCCAGACACGACGTCAAACACACGGGAACTTTTCAGTGTTGTTCAGACGTTACTCGGGGAATGGGTTTGACTCATCGCGTTGGGAAGCGTTTCACCATAAAGACTATCGGTATCTGGGGCAAGATCTGGATGGATGATAACATCAAGTTGAAGAACCACACTAACATAGTCATCTTTTTCTTAGTGCGTGACCGGCGTCCTAGTGGAGAACCAGTTTCTTTTGGAAGTTTGTTTAATATGTTCGATAACGAGCCAACTACGGCCACTGTGAAGCAAGAATATCGTGATCGTTTTCAGGTTATGAGGAGGTTTCATGCATCTGTTACCGGTGGACAGTACGCTTCAAAGGAACAGGCGTTGGTTAAGCGTTTTTTCAGGAACATTAATCATCGAGTTGTTTACAACCAACAAGAAGGCGCAGAGTACAAGAATCATCATGAAAATGCTTTGATGTTGTATATGGCATGTAGTCATGCCTCTAATCCTGTGTACGCGACAATTAAAGTTCGCATTTATTTTTACGACTCCATTACGAATTAATAAAGATTGAATATTATTTCATATTTTGGGTCTACATCAATTGTTCCATGAATTACATCAAACAACACATGATCGCACGCTAAAATACATGTATTAATTGAAATGACACCTAATCTATCTAAATAACGCATAACTTGTGTTTTAAAGACTCTCAAGAAACGCCAGGTCTGACTCCGTAAGACTGTTGAGATAGTCAATGTCATCCAGCATTTGTGAATCCCCAAGGCTTTCCTGAGGTTGTGGTTGAACTGGAGTCGAATTACTATTTCGTGGAACGGTAATCCCATTACCCATTCGTGGTGGCTCATCACCTTGAAATATATTGCATTTGGGACTGTCCAGATATAGGCGCCATTCTGCGCTTGAGCTGCAGTGATGGACTCCCCTGTGCGTAAATCCATGGTTGGCACACTCTATTGCGAGGTAGTATGAACAACCACAGGTTAAATCAACTCGTCGGCGCCTGATCTGTTTCTTTTTAGCTATTCTGTGTCTGACTTTTATTGGAATTTGAGTAGAGCGGGAAGGAGATGTCGACGAAGATTGCATTCTTTAATGCCCACTGCTTTAAATCTTTATTTTTATCTTCATCCAAGAAGCTTTTATAGGAGCTATTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCTCCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAATCGTGCTGGGCACCCATGAATTCTTTAAAGTGCTTTAGATAGTGCGGATCGACGTCATCGATGACGTTATACCAGGCATTATTGCTATACACTTTTGGACTTAGGTCCAGATGACCGCATAGGTAATTGTGCGCACCTAATGATCTGGCCCACATTGTTTTCCCTGTTCTTGACTCCCCTTCAATGACTATGCTAATCGGTCTATCCGGCCGCGCAGCGGCATCCACCACGTTGATTGACGCCCAATCTTTCATGATCTGAGGAACGTTATTGAATGAGTTTAACCTAAACGGACAAGAATAGGGCTCTAATGGCTTACTGAAAATGCGATCTAAGTTGCTTTTAATGTTGTGGTAATGTAAGACGAAGTCCTTCGGAGCAAGTTCTTTCACAATGTTGAGAGCCTTCGTCGGACTTCCAGAGTTAATTGCTGCGGCGTAAGCGTCGTTGGCTGATTGTTGTCCTCCTCGGCTAGATCTTCCATCGATCTGGAATTCGCCCCATGAGATGGTGTCTCCATCCTTCTCGATATAGGACTTGACGTCGGAGCTCGATTTTGCTCCCTGAATGTTTGGATGAAACACGGCAGATCTGTTTCCAGAGACAAGGTCGAACAGTCTTGGATTTGTGATCTGGAGCTTACCTTCGAATTGTAGCAGTACGTGCAGATGAGGTTCCCCATCTTCGTGTAATTCCCTTGCTACCTTGATGAATTTCTTATTGACGGCTGTTGGTATCTGCCGGAGAAGCTCTAGGGCTTCCTCTTTCGGAAGAGAGCATCTGGGATAAGTGGCGAAAATGTTTTTGGCATTCACTCTAAACGCTCCGCTGCGTGGCATATTTGCAATTCTTGCGTTTACACCGATTGCTCTCAAAATCTTTTATCGCATATATTGGTGTAACGGGGTACCTAATATACTATATACCCCAATACACCTGGTAGTGACATCTGTCCCTAGTCCCCACACCTTTAGCGGCCCTCAGTATAATATT

Gene Information

NCBI Accession AAB87605.1
Location 113-451
Gene Name v2
Protein Name precoat protein
Coding Region ATGTTTAACCCACTAACTGAACCCCTCCCAGTTACTCCTCACGGTTTGATGTGTATGTTGGCTTTGAAATATTTGCAGGAGTTCGAGAAATCTGTACATTTGACTCCGTGTGATAATACTGAGTTGTTGTTACTCCGCCGTGTTATTCGTGCAAGGACTTACGATGAAGCGAAGCGCCGATACCATATATTCCACACCTTCCAAGGCTCGAAGGAGGTTGACGTTCGACACCCCTCGTGCGACTCCTGCGTCCTTAGGGCGTTCCAACAAAAGGCGGGCTTGGGAGAACCGGCCCATGAACCGCAAGCCCATGATGTACCGGCTTTGGAGGAGTCCTGA
Protein Sequence MFNPLTEPLPVTPHGLMCMLALKYLQEFEKSVHLTPCDNTELLLLRRVIRARTYDEAKRRYHIFHTFQGSKEVDVRHPSCDSCVLRAFQQKAGLGEPAHEPQAHDVPALEES

NCBI Accession AAB87606.1
Location 276-1037
Gene Name cp
Protein Name coat protein
Coding Region ATGAAGCGAAGCGCCGATACCATATATTCCACACCTTCCAAGGCTCGAAGGAGGTTGACGTTCGACACCCCTCGTGCGACTCCTGCGTCCTTAGGGCGTTCCAACAAAAGGCGGGCTTGGGAGAACCGGCCCATGAACCGCAAGCCCATGATGTACCGGCTTTGGAGGAGTCCTGATGTTCCGTATGGTTGTGAGGGTCCATGTAAGGTTCAGTCTTTCGAGGCCAGACACGACGTCAAACACACGGGAACTTTTCAGTGTTGTTCAGACGTTACTCGGGGAATGGGTTTGACTCATCGCGTTGGGAAGCGTTTCACCATAAAGACTATCGGTATCTGGGGCAAGATCTGGATGGATGATAACATCAAGTTGAAGAACCACACTAACATAGTCATCTTTTTCTTAGTGCGTGACCGGCGTCCTAGTGGAGAACCAGTTTCTTTTGGAAGTTTGTTTAATATGTTCGATAACGAGCCAACTACGGCCACTGTGAAGCAAGAATATCGTGATCGTTTTCAGGTTATGAGGAGGTTTCATGCATCTGTTACCGGTGGACAGTACGCTTCAAAGGAACAGGCGTTGGTTAAGCGTTTTTTCAGGAACATTAATCATCGAGTTGTTTACAACCAACAAGAAGGCGCAGAGTACAAGAATCATCATGAAAATGCTTTGATGTTGTATATGGCATGTAGTCATGCCTCTAATCCTGTGTACGCGACAATTAAAGTTCGCATTTATTTTTACGACTCCATTACGAATTAA
Protein Sequence MKRSADTIYSTPSKARRRLTFDTPRATPASLGRSNKRRAWENRPMNRKPMMYRLWRSPDVPYGCEGPCKVQSFEARHDVKHTGTFQCCSDVTRGMGLTHRVGKRFTIKTIGIWGKIWMDDNIKLKNHTNIVIFFLVRDRRPSGEPVSFGSLFNMFDNEPTTATVKQEYRDRFQVMRRFHASVTGGQYASKEQALVKRFFRNINHRVVYNQQEGAEYKNHHENALMLYMACSHASNPVYATIKVRIYFYDSITN

NCBI Accession AAB87609.1
Location 1034-1438
Gene Name c3
Protein Name c3 protein
Coding Region ATGGATTTACGCACAGGGGAGTCCATCACTGCAGCTCAAGCGCAGAATGGCGCCTATATCTGGACAGTCCCAAATGCAATATATTTCAAGGTGATGAGCCACCACGAATGGGTAATGGGATTACCGTTCCACGAAATAGTAATTCGACTCCAGTTCAACCACAACCTCAGGAAAGCCTTGGGGATTCACAAATGCTGGATGACATTGACTATCTCAACAGTCTTACGGAGTCAGACCTGGCGTTTCTTGAGAGTCTTTAAAACACAAGTTATGCGTTATTTAGATAGATTAGGTGTCATTTCAATTAATACATGTATTTTAGCGTGCGATCATGTGTTGTTTGATGTAATTCATGGAACAATTGATGTAGACCCAAAATATGAAATAATATTCAATCTTTATTAA
Protein Sequence MDLRTGESITAAQAQNGAYIWTVPNAIYFKVMSHHEWVMGLPFHEIVIRLQFNHNLRKALGIHKCWMTLTISTVLRSQTWRFLRVFKTQVMRYLDRLGVISINTCILACDHVLFDVIHGTIDVDPKYEIIFNLY

NCBI Accession AAB87608.1
Location 1179-1586
Gene Name trap
Protein Name transcription activation protein
Coding Region ATGCAATCTTCGTCGACATCTCCTTCCCGCTCTACTCAAATTCCAATAAAAGTCAGACACAGAATAGCTAAAAAGAAACAGATCAGGCGCCGACGAGTTGATTTAACCTGTGGTTGTTCATACTACCTCGCAATAGAGTGTGCCAACCATGGATTTACGCACAGGGGAGTCCATCACTGCAGCTCAAGCGCAGAATGGCGCCTATATCTGGACAGTCCCAAATGCAATATATTTCAAGGTGATGAGCCACCACGAATGGGTAATGGGATTACCGTTCCACGAAATAGTAATTCGACTCCAGTTCAACCACAACCTCAGGAAAGCCTTGGGGATTCACAAATGCTGGATGACATTGACTATCTCAACAGTCTTACGGAGTCAGACCTGGCGTTTCTTGAGAGTCTTTAA
Protein Sequence MQSSSTSPSRSTQIPIKVRHRIAKKKQIRRRRVDLTCGCSYYLAIECANHGFTHRGVHHCSSSAEWRLYLDSPKCNIFQGDEPPRMGNGITVPRNSNSTPVQPQPQESLGDSQMLDDIDYLNSLTESDLAFLESL

NCBI Accession AAB87607.1
Location 1516-2574
Gene Name rep
Protein Name replication-associated protein
Coding Region ATGCCACGCAGCGGAGCGTTTAGAGTGAATGCCAAAAACATTTTCGCCACTTATCCCAGATGCTCTCTTCCGAAAGAGGAAGCCCTAGAGCTTCTCCGGCAGATACCAACAGCCGTCAATAAGAAATTCATCAAGGTAGCAAGGGAATTACACGAAGATGGGGAACCTCATCTGCACGTACTGCTACAATTCGAAGGTAAGCTCCAGATCACAAATCCAAGACTGTTCGACCTTGTCTCTGGAAACAGATCTGCCGTGTTTCATCCAAACATTCAGGGAGCAAAATCGAGCTCCGACGTCAAGTCCTATATCGAGAAGGATGGAGACACCATCTCATGGGGCGAATTCCAGATCGATGGAAGATCTAGCCGAGGAGGACAACAATCAGCCAACGACGCTTACGCCGCAGCAATTAACTCTGGAAGTCCGACGAAGGCTCTCAACATTGTGAAAGAACTTGCTCCGAAGGACTTCGTCTTACATTACCACAACATTAAAAGCAACTTAGATCGCATTTTCAGTAAGCCATTAGAGCCCTATTCTTGTCCGTTTAGGTTAAACTCATTCAATAACGTTCCTCAGATCATGAAAGATTGGGCGTCAATCAACGTGGTGGATGCCGCTGCGCGGCCGGATAGACCGATTAGCATAGTCATTGAAGGGGAGTCAAGAACAGGGAAAACAATGTGGGCCAGATCATTAGGTGCGCACAATTACCTATGCGGTCATCTGGACCTAAGTCCAAAAGTGTATAGCAATAATGCCTGGTATAACGTCATCGATGACGTCGATCCGCACTATCTAAAGCACTTTAAAGAATTCATGGGTGCCCAGCACGATTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGAGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAAATAGCTCCTATAAAAGCTTCTTGGATGAAGATAAAAATAAAGATTTAAAGCAGTGGGCATTAAAGAATGCAATCTTCGTCGACATCTCCTTCCCGCTCTACTCAAATTCCAATAAAAGTCAGACACAGAATAGCTAA
Protein Sequence MPRSGAFRVNAKNIFATYPRCSLPKEEALELLRQIPTAVNKKFIKVARELHEDGEPHLHVLLQFEGKLQITNPRLFDLVSGNRSAVFHPNIQGAKSSSDVKSYIEKDGDTISWGEFQIDGRSSRGGQQSANDAYAAAINSGSPTKALNIVKELAPKDFVLHYHNIKSNLDRIFSKPLEPYSCPFRLNSFNNVPQIMKDWASINVVDAAARPDRPISIVIEGESRTGKTMWARSLGAHNYLCGHLDLSPKVYSNNAWYNVIDDVDPHYLKHFKEFMGAQHDWQSNTKYGKPIQIKGGIPTIFLCNPGPNSSYKSFLDEDKNKDLKQWALKNAIFVDISFPLYSNSNKSQTQNS

NCBI Accession AAB87610.1
Location 2124-2417
Gene Name c4
Protein Name c4 protein
Coding Region ATGGGGAACCTCATCTGCACGTACTGCTACAATTCGAAGGTAAGCTCCAGATCACAAATCCAAGACTGTTCGACCTTGTCTCTGGAAACAGATCTGCCGTGTTTCATCCAAACATTCAGGGAGCAAAATCGAGCTCCGACGTCAAGTCCTATATCGAGAAGGATGGAGACACCATCTCATGGGGCGAATTCCAGATCGATGGAAGATCTAGCCGAGGAGGACAACAATCAGCCAACGACGCTTACGCCGCAGCAATTAACTCTGGAAGTCCGACGAAGGCTCTCAACATTGTGA
Protein Sequence MGNLICTYCYNSKVSSRSQIQDCSTLSLETDLPCFIQTFREQNRAPTSSPISRRMETPSHGANSRSMEDLAEEDNNQPTTLTPQQLTLEVRRRLSTL