Cotton leaf curl Barasat virus
Basic Information
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCAAATTTTTTGGTGGTCCCTCGACCAATCATATGATGCGCTCAAAGCTTAATAACGCTCCCGCCCACTATAAGTACTTCGGCCCTAAGTTTCAATTTAAAAAATGTGGGATCCACTTGTAAACGAGTTCCCCGAGACGGTTCACGGTTTTCGGTGCATGCTTGCCATCAAATACCTTCAATTACTCTCTGAAGGATACTCTCCTGATACGGTGGGTTACGATTTAATACGAGATCTAATCTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACTCAACCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCCCGAATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAAGGTCCATGTAAGGTACAGTCATTTGAGTCTAGACACGATGTCGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTCACGCGTGGAACTGGGCTGACCCATCGAGTAGGTAAAAGGTTTTGTGTTAAATCTGTTTATGTCTTGGGTAAGATCTGGATGGATGAGAACATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTCGATAAACCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAACCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTCCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCCACTCTTAAGATTAGGATCTATTTCTATGACTCTGTAACGAATTGATATTAATAAAGATTGAATTTTATTTCTGAATATTGATCTACATACATAGTTTGTTGTATTACATTGTACAATACATGTTCGACAGCTTTAATAACTAAATTAATTGAAATTACACCGAGATTGTTGAGATATTTGAGGACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCCGAGGGTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCACTCCCAGAGCTTTCCGAAGGTTGTAGTTGAACTGGATCCTGATTGTTATTATGTCCGTGTTCATCGTGAATGGACGGTTGTCGTGGCTGAGGATCTTGAAATAGAGGGGATTTGGAACCTTCCAGATATAGGCGCCACTCCTTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTAAATCCATGGTTGAAGCAGTTTAGAGATAGAAAATAAGAACACCCGCATTCAAGATCGACTCTCCTCCTCCTGTTGCGTCTCTTCGCTTCCCTGTGCTTCACTTTGATTGGAACCTGAGTACAGTGGTCCTTCGAGGGTGATGAAGATCGCATTCTTGAGAGCCCAGTTCTTTAATGCGGTGTTTTTTTCCTCGTTGAGGAATTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTATTTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACGTCATCAATGACGTTGAACCAGGCTTCGTTACTGTAGACCTTGGGGCTTAAATCTAGGTGTCCACACAGATAGTTATGTGGGCCTAGTGATCTGGCCCACATTGTCTTCCCTGTACGACTGTCTCCCTCAATTACTATACTTTGAGGTCTGTGTGGCCGCGCACCGGCATCGACGACGTTCTCTGACGCCCACTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAGGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGCAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGTGCTGCGGCGTAAGCGTCATTTGCTGTCTGTTGCCCTCCTCTTGCTGACCTTCCGTCGATCTGAAATTGCCCCCAGTCGAGAATGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCAAGTCGAAGAATCGCATATTCTGGCACTTGAATTTCCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCATGAAGCTCTCTGCAGATTTTAATATATTTTTTTGAAGTTGGGGTTTGGAGATTTAATAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAACATTTGGGATAAGTGATGAAATAATTTTTGGAATAAATACCGTTCCGCTTTGGAGGCATGTTGACTAAAATTGATCACCGATTGACCGCTCTTGCAACTCTCCCCGGTATATCGGTGATCAATATATAGTGATCACCAAATGGCATAATGGTAATAAAAAAACTTTAATTTGAAATTCAAACCAAAAGGCTAAAGCGGCCATCCGTTTAATATT
Gene Information
NCBI Accession
|
BAU61800.1
|
Location
|
117-464 |
Gene Name
|
AV2 |
Protein Name
|
Av2 protein |
Coding Region
|
ATGTGGGATCCACTTGTAAACGAGTTCCCCGAGACGGTTCACGGTTTTCGGTGCATGCTTGCCATCAAATACCTTCAATTACTCTCTGAAGGATACTCTCCTGATACGGTGGGTTACGATTTAATACGAGATCTAATCTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACTCAACCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCCCGAATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA |
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAIKYLQLLSEGYSPDTVGYDLIRDLISILRSRNYVEASCRYRHFYPRVEGASASELRQPVLNPCCCPHCPRHKIPNVGEQAHESQAQNVQDVQKP |
NCBI Accession
|
BAU61801.1
|
Location
|
277-1047 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACTCAACCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCCCGAATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAAGGTCCATGTAAGGTACAGTCATTTGAGTCTAGACACGATGTCGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTCACGCGTGGAACTGGGCTGACCCATCGAGTAGGTAAAAGGTTTTGTGTTAAATCTGTTTATGTCTTGGGTAAGATCTGGATGGATGAGAACATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTCGATAAACCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAACCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTCCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCCACTCTTAAGATTAGGATCTATTTCTATGACTCTGTAACGAATTGA |
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYSTRVAVPTVRVTKSRMWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession
|
BAU61802.1
|
Location
|
1050-1454 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAGTGGCGCCTATATCTGGAAGGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGTCCATTCACGATGAACACGGACATAATAACAATCAGGATCCAGTTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACACCCTCGGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTCCTCAAATATCTCAACAATCTCGGTGTAATTTCAATTAATTTAGTTATTAAAGCTGTCGAACATGTATTGTACAATGTAATACAACAAACTATGTATGTAGATCAATATTCAGAAATAAAATTCAATCTTTATTAA |
Protein Sequence
|
MDLRTGEPITAAQARSGAYIWKVPNPLYFKILSHDNRPFTMNTDIITIRIQFNYNLRKALGVHKCFLTFRIWTTLHPRTGLFLRVFKTQVLKYLNNLGVISINLVIKAVEHVLYNVIQQTMYVDQYSEIKFNLY |
NCBI Accession
|
BAU61803.1
|
Location
|
1147-1599 |
Gene Name
|
AC2 |
Protein Name
|
trans-activator protein |
Coding Region
|
ATGCGATCTTCATCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTGAAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTCGATCTTGAATGCGGGTGTTCTTATTTTCTATCTCTAAACTGCTTCAACCATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAGTGGCGCCTATATCTGGAAGGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGTCCATTCACGATGAACACGGACATAATAACAATCAGGATCCAGTTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACACCCTCGGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTCCTCAAATATCTCAACAATCTCGGTGTAATTTCAATTAA |
Protein Sequence
|
MRSSSPSKDHCTQVPIKVKHREAKRRNRRRRVDLECGCSYFLSLNCFNHGFTHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNNQDPVQLQPSESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNFN |
NCBI Accession
|
BAU61804.1
|
Location
|
1496-2584 |
Gene Name
|
AC1 |
Protein Name
|
replication associated protein |
Coding Region
|
ATGCCTCCAAAGCGGAACGGTATTTATTCCAAAAATTATTTCATCACTTATCCCAAATGTTCTCTCACCAAAGAGGAAGCACTTTCCCAATTATTAAATCTCCAAACCCCAACTTCAAAAAAATATATTAAAATCTGCAGAGAGCTTCATGAAGATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGGAAATTCAAGTGCCAGAATATGCGATTCTTCGACTTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACATTCTCGACTGGGGGCAATTTCAGATCGACGGAAGGTCAGCAAGAGGAGGGCAACAGACAGCAAATGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTGCAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCCTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCGTCAGAGAACGTCGTCGATGCCGGTGCGCGGCCACACAGACCTCAAAGTATAGTAATTGAGGGAGACAGTCGTACAGGGAAGACAATGTGGGCCAGATCACTAGGCCCACATAACTATCTGTGTGGACACCTAGATTTAAGCCCCAAGGTCTACAGTAACGAAGCCTGGTTCAACGTCATTGATGACGTCGATCCGCACTTCCTCAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACTAAATACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTCTGCAATCCTGGTCCCAACAGCAGTTATAAAGAATTCCTCAACGAGGAAAAAAACACCGCATTAAAGAACTGGGCTCTCAAGAATGCGATCTTCATCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTGAAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTCGATCTTGA |
Protein Sequence
|
MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNLQTPTSKKYIKICRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWASENVVDAGARPHRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWFNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPLYSGSNQSEAQGSEETQQEEESRS |
NCBI Accession
|
BAU61805.1
|
Location
|
2128-2430 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGGAAATTCAAGTGCCAGAATATGCGATTCTTCGACTTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACATTCTCGACTGGGGGCAATTTCAGATCGACGGAAGGTCAGCAAGAGGAGGGCAACAGACAGCAAATGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG |
Protein Sequence
|
MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPAPTSSPTSTRTETFSTGGNFRSTEGQQEEGNRQQMTLTPQHLTREVSQRLLESLRN |