Cotton leaf curl Barasat virus


Basic Information

Genus Begomovirus
Isolate India
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

LC080677
ACCGGATGGCCGCGCAAATTTTTTGGTGGTCCCTCGACCAATCATATGATGCGCTCAAAGCTTAATAACGCTCCCGCCCACTATAAGTACTTCGGCCCTAAGTTTCAATTTAAAAAATGTGGGATCCACTTGTAAACGAGTTCCCCGAGACGGTTCACGGTTTTCGGTGCATGCTTGCCATCAAATACCTTCAATTACTCTCTGAAGGATACTCTCCTGATACGGTGGGTTACGATTTAATACGAGATCTAATCTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACTCAACCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCCCGAATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAAGGTCCATGTAAGGTACAGTCATTTGAGTCTAGACACGATGTCGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTCACGCGTGGAACTGGGCTGACCCATCGAGTAGGTAAAAGGTTTTGTGTTAAATCTGTTTATGTCTTGGGTAAGATCTGGATGGATGAGAACATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTCGATAAACCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAACCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTCCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCCACTCTTAAGATTAGGATCTATTTCTATGACTCTGTAACGAATTGATATTAATAAAGATTGAATTTTATTTCTGAATATTGATCTACATACATAGTTTGTTGTATTACATTGTACAATACATGTTCGACAGCTTTAATAACTAAATTAATTGAAATTACACCGAGATTGTTGAGATATTTGAGGACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCCGAGGGTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCACTCCCAGAGCTTTCCGAAGGTTGTAGTTGAACTGGATCCTGATTGTTATTATGTCCGTGTTCATCGTGAATGGACGGTTGTCGTGGCTGAGGATCTTGAAATAGAGGGGATTTGGAACCTTCCAGATATAGGCGCCACTCCTTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTAAATCCATGGTTGAAGCAGTTTAGAGATAGAAAATAAGAACACCCGCATTCAAGATCGACTCTCCTCCTCCTGTTGCGTCTCTTCGCTTCCCTGTGCTTCACTTTGATTGGAACCTGAGTACAGTGGTCCTTCGAGGGTGATGAAGATCGCATTCTTGAGAGCCCAGTTCTTTAATGCGGTGTTTTTTTCCTCGTTGAGGAATTCTTTATAACTGCTGTTGGGACCAGGATTGCAGAGGAAGATTGTCGGTATCCCGCCTTTAATTTGAACTGGCTTCCCGTATTTAGTGTTGGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACGTCATCAATGACGTTGAACCAGGCTTCGTTACTGTAGACCTTGGGGCTTAAATCTAGGTGTCCACACAGATAGTTATGTGGGCCTAGTGATCTGGCCCACATTGTCTTCCCTGTACGACTGTCTCCCTCAATTACTATACTTTGAGGTCTGTGTGGCCGCGCACCGGCATCGACGACGTTCTCTGACGCCCACTCTTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGAGGAAAAAGGAGAAACATAAGGAGCTGGTGGCTCCTGAAAGATCCTGTCTAGATTTGCATTTAAATTATGAAATTGCAGTACAAAATCTTTAGGAGCTAGTTCCTTAATGACTCTAAGAGCCTCTGACTTACTTCCCGCGTTAAGTGCTGCGGCGTAAGCGTCATTTGCTGTCTGTTGCCCTCCTCTTGCTGACCTTCCGTCGATCTGAAATTGCCCCCAGTCGAGAATGTCTCCGTCCTTGTCGATGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGAGACCAAGTCGAAGAATCGCATATTCTGGCACTTGAATTTCCCTTCGAACTGGATGAGAACATGCAAGTGAGGAGTCCCATCTTCATGAAGCTCTCTGCAGATTTTAATATATTTTTTTGAAGTTGGGGTTTGGAGATTTAATAATTGGGAAAGTGCTTCCTCTTTGGTGAGAGAACATTTGGGATAAGTGATGAAATAATTTTTGGAATAAATACCGTTCCGCTTTGGAGGCATGTTGACTAAAATTGATCACCGATTGACCGCTCTTGCAACTCTCCCCGGTATATCGGTGATCAATATATAGTGATCACCAAATGGCATAATGGTAATAAAAAAACTTTAATTTGAAATTCAAACCAAAAGGCTAAAGCGGCCATCCGTTTAATATT

Gene Information

NCBI Accession BAU61800.1
Location 117-464
Gene Name AV2
Protein Name Av2 protein
Coding Region ATGTGGGATCCACTTGTAAACGAGTTCCCCGAGACGGTTCACGGTTTTCGGTGCATGCTTGCCATCAAATACCTTCAATTACTCTCTGAAGGATACTCTCCTGATACGGTGGGTTACGATTTAATACGAGATCTAATCTCTATTTTGCGTTCCAGGAATTATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACTCAACCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCCCGAATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNEFPETVHGFRCMLAIKYLQLLSEGYSPDTVGYDLIRDLISILRSRNYVEASCRYRHFYPRVEGASASELRQPVLNPCCCPHCPRHKIPNVGEQAHESQAQNVQDVQKP

NCBI Accession BAU61801.1
Location 277-1047
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGTCCTGCAGATATCGTCATTTCTACCCCCGCGTCGAAGGTGCGTCGGCGTCTGAACTTCGACAGCCCGTACTCAACCCGTGTTGCTGTCCCCACTGTCCGCGTCACAAAATCCCGAATGTGGGCGAACAGGCCCATGAATCGCAAGCCCAGAATGTACAGGATGTACAGAAGCCCTGATGTTCCAAGGGGCTGTGAAGGTCCATGTAAGGTACAGTCATTTGAGTCTAGACACGATGTCGTCCATATAGGGAAGGTCATGTGTATTAGTGATGTCACGCGTGGAACTGGGCTGACCCATCGAGTAGGTAAAAGGTTTTGTGTTAAATCTGTTTATGTCTTGGGTAAGATCTGGATGGATGAGAACATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTCGATAAACCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAACCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTCCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTATATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCCCTGATGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTTTACGCCACTCTTAAGATTAGGATCTATTTCTATGACTCTGTAACGAATTGA
Protein Sequence MSKRPADIVISTPASKVRRRLNFDSPYSTRVAVPTVRVTKSRMWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession BAU61802.1
Location 1050-1454
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAGTGGCGCCTATATCTGGAAGGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGTCCATTCACGATGAACACGGACATAATAACAATCAGGATCCAGTTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACACCCTCGGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTCCTCAAATATCTCAACAATCTCGGTGTAATTTCAATTAATTTAGTTATTAAAGCTGTCGAACATGTATTGTACAATGTAATACAACAAACTATGTATGTAGATCAATATTCAGAAATAAAATTCAATCTTTATTAA
Protein Sequence MDLRTGEPITAAQARSGAYIWKVPNPLYFKILSHDNRPFTMNTDIITIRIQFNYNLRKALGVHKCFLTFRIWTTLHPRTGLFLRVFKTQVLKYLNNLGVISINLVIKAVEHVLYNVIQQTMYVDQYSEIKFNLY

NCBI Accession BAU61803.1
Location 1147-1599
Gene Name AC2
Protein Name trans-activator protein
Coding Region ATGCGATCTTCATCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTGAAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTCGATCTTGAATGCGGGTGTTCTTATTTTCTATCTCTAAACTGCTTCAACCATGGATTTACGCACAGGGGAACCCATCACTGCAGCTCAAGCAAGGAGTGGCGCCTATATCTGGAAGGTTCCAAATCCCCTCTATTTCAAGATCCTCAGCCACGACAACCGTCCATTCACGATGAACACGGACATAATAACAATCAGGATCCAGTTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACACCCTCGGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTCCTCAAATATCTCAACAATCTCGGTGTAATTTCAATTAA
Protein Sequence MRSSSPSKDHCTQVPIKVKHREAKRRNRRRRVDLECGCSYFLSLNCFNHGFTHRGTHHCSSSKEWRLYLEGSKSPLFQDPQPRQPSIHDEHGHNNNQDPVQLQPSESSGSAQVFSNLPNLDDLTPSDWSFLKGIQNPSPQISQQSRCNFN

NCBI Accession BAU61804.1
Location 1496-2584
Gene Name AC1
Protein Name replication associated protein
Coding Region ATGCCTCCAAAGCGGAACGGTATTTATTCCAAAAATTATTTCATCACTTATCCCAAATGTTCTCTCACCAAAGAGGAAGCACTTTCCCAATTATTAAATCTCCAAACCCCAACTTCAAAAAAATATATTAAAATCTGCAGAGAGCTTCATGAAGATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGGAAATTCAAGTGCCAGAATATGCGATTCTTCGACTTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACATTCTCGACTGGGGGCAATTTCAGATCGACGGAAGGTCAGCAAGAGGAGGGCAACAGACAGCAAATGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAGCTCCTAAAGATTTTGTACTGCAATTTCATAATTTAAATGCAAATCTAGACAGGATCTTTCAGGAGCCACCAGCTCCTTATGTTTCTCCTTTTTCCTCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAAGAGTGGGCGTCAGAGAACGTCGTCGATGCCGGTGCGCGGCCACACAGACCTCAAAGTATAGTAATTGAGGGAGACAGTCGTACAGGGAAGACAATGTGGGCCAGATCACTAGGCCCACATAACTATCTGTGTGGACACCTAGATTTAAGCCCCAAGGTCTACAGTAACGAAGCCTGGTTCAACGTCATTGATGACGTCGATCCGCACTTCCTCAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCCAACACTAAATACGGGAAGCCAGTTCAAATTAAAGGCGGGATACCGACAATCTTCCTCTGCAATCCTGGTCCCAACAGCAGTTATAAAGAATTCCTCAACGAGGAAAAAAACACCGCATTAAAGAACTGGGCTCTCAAGAATGCGATCTTCATCACCCTCGAAGGACCACTGTACTCAGGTTCCAATCAAAGTGAAGCACAGGGAAGCGAAGAGACGCAACAGGAGGAGGAGAGTCGATCTTGA
Protein Sequence MPPKRNGIYSKNYFITYPKCSLTKEEALSQLLNLQTPTSKKYIKICRELHEDGTPHLHVLIQFEGKFKCQNMRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDILDWGQFQIDGRSARGGQQTANDAYAAALNAGSKSEALRVIKELAPKDFVLQFHNLNANLDRIFQEPPAPYVSPFSSSSFDQVPEELEEWASENVVDAGARPHRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWFNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLNEEKNTALKNWALKNAIFITLEGPLYSGSNQSEAQGSEETQQEEESRS

NCBI Accession BAU61805.1
Location 2128-2430
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGACTCCTCACTTGCATGTTCTCATCCAGTTCGAAGGGAAATTCAAGTGCCAGAATATGCGATTCTTCGACTTGGTCTCCCCAAGCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACATCGACAAGGACGGAGACATTCTCGACTGGGGGCAATTTCAGATCGACGGAAGGTCAGCAAGAGGAGGGCAACAGACAGCAAATGACGCTTACGCCGCAGCACTTAACGCGGGAAGTAAGTCAGAGGCTCTTAGAGTCATTAAGGAACTAG
Protein Sequence MGLLTCMFSSSSKGNSSARICDSSTWSPQAGQHISIRTYRELNPAPTSSPTSTRTETFSTGGNFRSTEGQQEEGNRQQMTLTPQHLTREVSQRLLESLRN