Cotton leaf curl Alabad virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000842045.1 |
| Release date |
2015/2/12 |
| Submitter |
Zhou,X., Liu,Y., Robinson,D.J., Harrison,B.D. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTTAGTGGTGGGTCCAGAACGCACGACGATGCAGACTCAAAGCTTAGATAACGCTCCTTCGGCTATAAGTACTTGCGCACTAAGTTTCAAATTGAAACATGTGGGATCCACTAGTAAACGAATTCCCGGATACGGTGCACGGGTTTCGTTGTATGCTTTCTGTCAAATATTTGCAACTTTTGTCGCAGGATTATTCTCCAGATACCCTTGGTTACGAGTTAATACGTGATTTAATCTGTATTCTACGCTCCCGTAATTATGTCGAAGCGAGCTGCCGATATCGTCATTTCTACGCCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGGCAGCCCATACACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAACAACAGGCATGGACAAACAGGCCTATGAACAGGAAACCCAGAATGTACCGGATGTACAGAAGTCCGGATGTTCCAAGGGGATGTGAGGGTCCCTGTAAGGTACAGTCGTTTGAATCTCGACACGATGTCGTTCATATTGGTAAGGTAATGTGTATTTCGGATGTTACGCGTGGAGTCGGTTTGACCCATCGTATAGGTAAGCGTTTTTGTGTCAAGTCAGTTTATGTTTTAGGTAAGATATGGATGGACGAGAACATCAAGACCAAGAACCATACGAATTCGGTGATGTTTTTCCTTGTTCGTGATCGACGACCGGTAGATAAACCACAAGATTTTGGTGAAGTATTTAATATGTTTGATAACGAGCCCAGTACGGCGACCGTGAAGAACATGCATAGGGATCGGTACCAGGTGTTGAGGAAATGGCATGCAACCGTTACTGGTGGTCAATATGCGAGTAAGGAGCAGGCATTGGTCAAGAAGTTTGTTAGGGTTAACAACTACGTTGTTTACAACCAGCAGGAAGCAGGAAAATACGAGAATCACACCGAGAATGCATTGATGCTTTATATGGCTTGTACCCATGCTAGTAACCCAGTTTATGCTACGCTTAAGATTAGAATATATTTTTATGACTCTGTAACGAACTAATATTAATAAAGTTTGAATTTTATATCTGAATATTGGTCTACATACATTGTTTGATTAATTACATTGTACAATACATGTTCAACGGCTTTAATAACTAAATTAAGTGAGATTACACCTAGATTGTTGAGATACTTGAGTACTTGGGTTTTGAATACCCTTAAGAAAAGACCAGTCGGAGGGTATAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGCACTCCCAGAGCTTTCCGAAGGTTGTAGTTGAATTGGATCCTCATTGTTATGATGTCCATGTTCGTCGTGAATGGACGGTTGTCGTGGCTGAGGATTTTGAAATAAAGGGGATTTGGAACCTCCCAGATAAAGACGCCATTCGTTGAATGAGCTGCAGTGATGCGTTCCCCTGTGCGAGAATCCATGGTTGTGGCAGTTGATACTTAGGTAATAGCTGCATCCACATTCAAGATCCACTCTCCTCCTCCTGGTCCTCCTCTTGGCCTCCCTGTGCTGGACTTTGATGGGCAATTGAGTACAGTGGTTCCTCGAGGGTGATGAAGACTGCATTCTTAACTGCCCAGTTTTTTAGGGCTTGGTTCTTTTCCTCGTCCAGATATTCTTTATAAGATGAGTTTGGCCCAGGATTGCAGAGGAAGATTGTGGGTATTCCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTGTTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTGAGGAAGTGCGGATCGACATCATCAATGACGTTATACCACGCATCATTGCTGTAAACTTTGGGGCTTAAATCTAAATGACCGCATAAGTAATTATGAGGCCCTAATGACCTAGCCCACATCGTTTTACCCGTACGACTGTCTCCCTCAATCACTATACTTTGAGGCCTCAGAGGCCGCGCAGCGGCATCCATGACATTCTCGGAGACCCACTCTTCAAGTTCTTCAGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCAACGGAGGAGTGAAAATCCTATCTAAATTACTATTTAAATTATGATATTGAAAAATAAATTTTTCTGGGAGTTTTTCCCTTATTATAGCCATAGCTGCTTCTTTAGAACCTGCATTTAGGGCTTCTGCAGCAGCATCATTAGCTGTCTGTTGACCTCCTCTTGCAGATCTTCCATCGATCTGAAATGTGCCCCAGTCGATGTAATCTCCGTCCTTCTCGATGTAGGACTTAACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGTGGAGGTATGAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAACTTGGCTTTACCTTTGAATTGGATGAGTGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCAACCCTAATGAATAATTTGTCTGAAGGGCATGAAATGTTAGATAATATATCTAACATCTGTTCTTTTGGAATTGGGCATTTTGGGAAAGTAAGAAAAATATTTTTTGCATTTATGCAAAAAGAATTATTTCTGGGCATTTTTGCTATCGGGGACACTTAAAACTCATATCAATTGGGGACACTGGGGACTCATTTATACTGCGTCCCTAAATGGCATAAATGTAAATATTTGCCTTTATGTTTGAATTTCAAATTCCAAACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
NP_795357.1
|
|
Location
|
121-486 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCACTAGTAAACGAATTCCCGGATACGGTGCACGGGTTTCGTTGTATGCTTTCTGTCAAATATTTGCAACTTTTGTCGCAGGATTATTCTCCAGATACCCTTGGTTACGAGTTAATACGTGATTTAATCTGTATTCTACGCTCCCGTAATTATGTCGAAGCGAGCTGCCGATATCGTCATTTCTACGCCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGGCAGCCCATACACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAACAACAGGCATGGACAAACAGGCCTATGAACAGGAAACCCAGAATGTACCGGATGTACAGAAGTCCGGATGTTCCAAGGGGATGTGA |
|
Protein Sequence
|
MWDPLVNEFPDTVHGFRCMLSVKYLQLLSQDYSPDTLGYELIRDLICILRSRNYVEASCRYRHFYARVESTPASELRQPIHQPCCCPHCPRHKTTGMDKQAYEQETQNVPDVQKSGCSKGM |
|
NCBI Accession
|
NP_795358.1
|
|
Location
|
281-1051 |
|
Gene Name
|
AV1 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGTCGAAGCGAGCTGCCGATATCGTCATTTCTACGCCCGCGTCGAAAGTACGCCGGCGTCTGAACTTCGGCAGCCCATACACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAACAACAGGCATGGACAAACAGGCCTATGAACAGGAAACCCAGAATGTACCGGATGTACAGAAGTCCGGATGTTCCAAGGGGATGTGAGGGTCCCTGTAAGGTACAGTCGTTTGAATCTCGACACGATGTCGTTCATATTGGTAAGGTAATGTGTATTTCGGATGTTACGCGTGGAGTCGGTTTGACCCATCGTATAGGTAAGCGTTTTTGTGTCAAGTCAGTTTATGTTTTAGGTAAGATATGGATGGACGAGAACATCAAGACCAAGAACCATACGAATTCGGTGATGTTTTTCCTTGTTCGTGATCGACGACCGGTAGATAAACCACAAGATTTTGGTGAAGTATTTAATATGTTTGATAACGAGCCCAGTACGGCGACCGTGAAGAACATGCATAGGGATCGGTACCAGGTGTTGAGGAAATGGCATGCAACCGTTACTGGTGGTCAATATGCGAGTAAGGAGCAGGCATTGGTCAAGAAGTTTGTTAGGGTTAACAACTACGTTGTTTACAACCAGCAGGAAGCAGGAAAATACGAGAATCACACCGAGAATGCATTGATGCTTTATATGGCTTGTACCCATGCTAGTAACCCAGTTTATGCTACGCTTAAGATTAGAATATATTTTTATGACTCTGTAACGAACTAA |
|
Protein Sequence
|
MSKRAADIVISTPASKVRRRLNFGSPYTSRAAAPIVRVTKQQAWTNRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGVGLTHRIGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
|
NCBI Accession
|
NP_795359.1
|
|
Location
|
1054-1458 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTCTCGCACAGGGGAACGCATCACTGCAGCTCATTCAACGAATGGCGTCTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAAAATCCTCAGCCACGACAACCGTCCATTCACGACGAACATGGACATCATAACAATGAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTATACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTACTCAAGTATCTCAACAATCTAGGTGTAATCTCACTTAATTTAGTTATTAAAGCCGTTGAACATGTATTGTACAATGTAATTAATCAAACAATGTATGTAGACCAATATTCAGATATAAAATTCAAACTTTATTAA |
|
Protein Sequence
|
MDSRTGERITAAHSTNGVFIWEVPNPLYFKILSHDNRPFTTNMDIITMRIQFNYNLRKALGVHKCFLTFRIWTTLYPPTGLFLRVFKTQVLKYLNNLGVISLNLVIKAVEHVLYNVINQTMYVDQYSDIKFKLY |
|
NCBI Accession
|
NP_795360.1
|
|
Location
|
1151-1603 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCAGTCTTCATCACCCTCGAGGAACCACTGTACTCAATTGCCCATCAAAGTCCAGCACAGGGAGGCCAAGAGGAGGACCAGGAGGAGGAGAGTGGATCTTGAATGTGGATGCAGCTATTACCTAAGTATCAACTGCCACAACCATGGATTCTCGCACAGGGGAACGCATCACTGCAGCTCATTCAACGAATGGCGTCTTTATCTGGGAGGTTCCAAATCCCCTTTATTTCAAAATCCTCAGCCACGACAACCGTCCATTCACGACGAACATGGACATCATAACAATGAGGATCCAATTCAACTACAACCTTCGGAAAGCTCTGGGAGTGCACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTATACCCTCCGACTGGTCTTTTCTTAAGGGTATTCAAAACCCAAGTACTCAAGTATCTCAACAATCTAGGTGTAATCTCACTTAA |
|
Protein Sequence
|
MQSSSPSRNHCTQLPIKVQHREAKRRTRRRRVDLECGCSYYLSINCHNHGFSHRGTHHCSSFNEWRLYLGGSKSPLFQNPQPRQPSIHDEHGHHNNEDPIQLQPSESSGSAQVFSNLPNLDDLIPSDWSFLKGIQNPSTQVSQQSRCNLT |
|
NCBI Accession
|
NP_795354.1
|
|
Location
|
1500-2591 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGCCCAGAAATAATTCTTTTTGCATAAATGCAAAAAATATTTTTCTTACTTTCCCAAAATGCCCAATTCCAAAAGAACAGATGTTAGATATATTATCTAACATTTCATGCCCTTCAGACAAATTATTCATTAGGGTTGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCACTCATCCAATTCAAAGGTAAAGCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATACCTCCACCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTTAAGTCCTACATCGAGAAGGACGGAGATTACATCGACTGGGGCACATTTCAGATCGATGGAAGATCTGCAAGAGGAGGTCAACAGACAGCTAATGATGCTGCTGCAGAAGCCCTAAATGCAGGTTCTAAAGAAGCAGCTATGGCTATAATAAGGGAAAAACTCCCAGAAAAATTTATTTTTCAATATCATAATTTAAATAGTAATTTAGATAGGATTTTCACTCCTCCGTTGGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCTGAAGAACTTGAAGAGTGGGTCTCCGAGAATGTCATGGATGCCGCTGCGCGGCCTCTGAGGCCTCAAAGTATAGTGATTGAGGGAGACAGTCGTACGGGTAAAACGATGTGGGCTAGGTCATTAGGGCCTCATAATTACTTATGCGGTCATTTAGATTTAAGCCCCAAAGTTTACAGCAATGATGCGTGGTATAACGTCATTGATGATGTCGATCCGCACTTCCTCAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCAAACACAAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGAATACCCACAATCTTCCTCTGCAATCCTGGGCCAAACTCATCTTATAAAGAATATCTGGACGAGGAAAAGAACCAAGCCCTAAAAAACTGGGCAGTTAAGAATGCAGTCTTCATCACCCTCGAGGAACCACTGTACTCAATTGCCCATCAAAGTCCAGCACAGGGAGGCCAAGAGGAGGACCAGGAGGAGGAGAGTGGATCTTGA |
|
Protein Sequence
|
MPRNNSFCINAKNIFLTFPKCPIPKEQMLDILSNISCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKAKFRNPRHFDVTHPHTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGTFQIDGRSARGGQQTANDAAAEALNAGSKEAAMAIIREKLPEKFIFQYHNLNSNLDRIFTPPLEVYVSPFLSSSFNQVPEELEEWVSENVMDAAARPLRPQSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHFLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNQALKNWAVKNAVFITLEEPLYSIAHQSPAQGGQEEDQEEESGS |
|
NCBI Accession
|
NP_795355.1
|
|
Location
|
2177-2434 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCTGCATATCCATGCACTCATCCAATTCAAAGGTAAAGCCAAGTTCAGAAACCCCAGACATTTCGATGTCACTCACCCTCATACCTCCACCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTTAAGTCCTACATCGAGAAGGACGGAGATTACATCGACTGGGGCACATTTCAGATCGATGGAAGATCTGCAAGAGGAGGTCAACAGACAGCTAATGATGCTGCTGCAGAAGCCCTAA |
|
Protein Sequence
|
MGLCISMHSSNSKVKPSSETPDISMSLTLIPPPNSIQTSRELSPALMLSPTSRRTEITSTGAHFRSMEDLQEEVNRQLMMLLQKP |