Corchorus yellow vein mosaic virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000906695.1
Isolate India: Maharashtra
Release date 2015/2/22
Submitter Archana,K., Malathi,V.G.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_020473
ACCGGATGGCCGCGCGATTTTTTTTAAAGTGGGCCCTCGACCAATCATATCGCTCGCTCAAAGTTAAATAACGCTCCCGCGCACTATAAGTACTTGCTCAGCAAGTTTTTCTTTGCACCATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGATGTGAGGGTCCGTGTAAGGTCCAGTCTTTTGAGTCTAGGCATGATGTAGTTCACATTGGTAAGGTTATGTGTATTAGTGATGTAACTAGGGGTACGGGTCTAACTCATAGGGTAGGGAAGCGTTTCTGTGTTAAGTCTGTTTATGTTCTGGGAAAGATATGGATGGACGAAAACATCAAGACCAAGAATCACACTAACAGTGTTATGTTCTTCCTCGTTCGTGATCGTCGTCCCGTTGATAAGCCGCAAGATTTTGGGGAGGTGTTCAACATGTTCGACAACGAGCCGAGCACCGCGACTGTCAAGAATATGCATAGGGATCGTTATCAGGTCCTTCGGAAGTGGCATGCTACGGTTACTGGTGGTCAGTATGCGTCCAAGGAACAGGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTCTATAACCAGCAAGAGGCTGGCAAGTACGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCCAATCCCGTGTATGCTACTCTGAAGATACGGATCTATTTCTACGATTCGGTCACAAATTAATAAAGATTGAATTTTATTACGTTTGAACTTTGTACATAAACTGTTTGCGTTAATACATTCCATAATACATGATCTACAGCCCTAATTACATTGTTGATACTAATTACACCCAAATTATCAATAAATTTCAACACTTGGGTCCTAAATACTCTTAAGAAACGACCAATCTGAAGGTGTGAGTTCGTCCAGATGCGGAAGGTTAGGAAACATTGGTGAATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGTATTCTTGCCGTTATGATGTCTTGGTTCGACAGGAAAGGCCTGCTGTGATGGTCTGTCATCCTGAAATACAGGGGATTTGGAACCGTCCAGGTAAAGGCGCCATTCTCTGCTTGAGCTGCAGTGATGTACTCCCCGGTGCGTAAATCCATGGTTGTGGCAGTTTATGTTGAGGAAGTATGAACAGCCGCAGTTAAGGTCCACTCTCCTCCGTCTGAATTTCTTCTTGGCTATCCTGTGCTGAACCTTGATGGGTACCTGAGAACAGTGGCCTTCTGAGGGTGACGAAGGTTGCATTTCTTATAGCCCAGTTCTTCAGTGCCGCGTTCTTTTCTTGGTCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCGTGCTTTAGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGCTTCATTACTGTACACTTTTGGACTTAAGTCCAAATGGCCACAAAGATAATTATGTGGACCCAAAGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCGATCACTATACTCACCGGTCTCAAGGGCCGCGCAGCGGCATGAACGACGTTATCGCACGCCCACTCTTCGAGTTCATCTGGAACTCGGTCGAAAGAAGAAGGAGAAAAAGGCGAAATATAGACCTCCATCGGAGGCGTAAAAATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAATACATAGTCTTTGGGTGCTAGTTCTCTAATGACGCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCCGCTGCATAAGCGTCGTTTGCAGTCTGCTGGCCTCCTCTTGCAGATCTGCCGTCGATTTGGAACTCTCCCCACTCAAGTGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCACTGATTCTTGCACTGGTATTTGCCCTCGAACTGGATGAGCACGTGTAAATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAGATCTTGATGAATTTTTTATTAGTTGGTGTCTGTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGTGAGAGAGCACTTGGGATAAGTTAGAAAATAATTCTTTGCGTTTATTTTAAATAGGCTCTTTGGAGGCATGGTCAATGGACACCGATTGACTCTTCCAAACCATTTACTCCTGCAATCGGTGTCTGGTGTCTTATTTATACCTGGACACCAAATGGCATAAGCGTAATTTAAAAAGATAGTTTCGAATTTCAAAACCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_007517187.1
Location 120-479
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAA
Protein Sequence MWDPLLNQFPETVFGLRCMLAVKYLQLVERTYSPDTVGYELIRDLISVVRARKYAEATTRYEHFNARMESTPSVELRQPVQCPCRCPYCPRHLKVSGVGQQAHEQEAEDIQNVQKSGCS

NCBI Accession YP_007517188.1
Location 280-1053
Gene Name AVI
Protein Name coat protein
Coding Region ATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGATGTGAGGGTCCGTGTAAGGTCCAGTCTTTTGAGTCTAGGCATGATGTAGTTCACATTGGTAAGGTTATGTGTATTAGTGATGTAACTAGGGGTACGGGTCTAACTCATAGGGTAGGGAAGCGTTTCTGTGTTAAGTCTGTTTATGTTCTGGGAAAGATATGGATGGACGAAAACATCAAGACCAAGAATCACACTAACAGTGTTATGTTCTTCCTCGTTCGTGATCGTCGTCCCGTTGATAAGCCGCAAGATTTTGGGGAGGTGTTCAACATGTTCGACAACGAGCCGAGCACCGCGACTGTCAAGAATATGCATAGGGATCGTTATCAGGTCCTTCGGAAGTGGCATGCTACGGTTACTGGTGGTCAGTATGCGTCCAAGGAACAGGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTCTATAACCAGCAAGAGGCTGGCAAGTACGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCCAATCCCGTGTATGCTACTCTGAAGATACGGATCTATTTCTACGATTCGGTCACAAATTAA
Protein Sequence MPKRPLDMSISTPGWKVRRRLNFDSPYSARAAVPIVPVISKSRAWANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_007517189.1
Location 583-987
Gene Name AC5
Protein Name AC5
Coding Region ATGAGTACATGCCATATACAACATCAAAGCATTCTCACTATGATTCTCGTACTTGCCAGCCTCTTGCTGGTTATAGACAACATAATTATTAACCCTAACAAACTTCTTCACGAGAGCCTGTTCCTTGGACGCATACTGACCACCAGTAACCGTAGCATGCCACTTCCGAAGGACCTGATAACGATCCCTATGCATATTCTTGACAGTCGCGGTGCTCGGCTCGTTGTCGAACATGTTGAACACCTCCCCAAAATCTTGCGGCTTATCAACGGGACGACGATCACGAACGAGGAAGAACATAACACTGTTAGTGTGATTCTTGGTCTTGATGTTTTCGTCCATCCATATCTTTCCCAGAACATAAACAGACTTAACACAGAAACGCTTCCCTACCCTATGAGTTAG
Protein Sequence MSTCHIQHQSILTMILVLASLLLVIDNIIINPNKLLHESLFLGRILTTSNRSMPLPKDLITIPMHILDSRGARLVVEHVEHLPKILRLINGTTITNEEEHNTVSVILGLDVFVHPYLSQNINRLNTETLPYPMS

NCBI Accession YP_007517190.1
Location 1050-1454
Gene Name AC3
Protein Name replication enhancement protein ReP
Coding Region ATGGATTTACGCACCGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGCCTTTACCTGGACGGTTCCAAATCCCCTGTATTTCAGGATGACAGACCATCACAGCAGGCCTTTCCTGTCGAACCAAGACATCATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGAACTCACACCTTCAGATTGGTCGTTTCTTAAGAGTATTTAGGACCCAAGTGTTGAAATTTATTGATAATTTGGGTGTAATTAGTATCAACAATGTAATTAGGGCTGTAGATCATGTATTATGGAATGTATTAACGCAAACAGTTTATGTACAAAGTTCAAACGTAATAAAATTCAATCTTTATTAA
Protein Sequence MDLRTGEYITAAQAENGAFTWTVPNPLYFRMTDHHSRPFLSNQDIITARIQFNYNLRKALGIHQCFLTFRIWTNSHLQIGRFLRVFRTQVLKFIDNLGVISINNVIRAVDHVLWNVLTQTVYVQSSNVIKFNLY

NCBI Accession YP_007517191.1
Location 1195-1599
Gene Name AC2
Protein Name transcription activation protein TrAp
Coding Region ATGCAACCTTCGTCACCCTCAGAAGGCCACTGTTCTCAGGTACCCATCAAGGTTCAGCACAGGATAGCCAAGAAGAAATTCAGACGGAGGAGAGTGGACCTTAACTGCGGCTGTTCATACTTCCTCAACATAAACTGCCACAACCATGGATTTACGCACCGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGCCTTTACCTGGACGGTTCCAAATCCCCTGTATTTCAGGATGACAGACCATCACAGCAGGCCTTTCCTGTCGAACCAAGACATCATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGAACTCACACCTTCAGATTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MQPSSPSEGHCSQVPIKVQHRIAKKKFRRRRVDLNCGCSYFLNINCHNHGFTHRGVHHCSSSREWRLYLDGSKSPVFQDDRPSQQAFPVEPRHHNGKNTVQLQPEESTGDSPMFPNLPHLDELTPSDWSFLKSI

NCBI Accession YP_007517192.1
Location 1496-2053
Gene Name AC1
Protein Name REP
Coding Region ATGGAGGTCTATATTTCGCCTTTTTCTCCTTCTTCTTTCGACCGAGTTCCAGATGAACTCGAAGAGTGGGCGTGCGATAACGTCGTTCATGCCGCTGCGCGGCCCTTGAGACCGGTGAGTATAGTGATCGAGGGTGATAGTCGTACGGGGAAGACAATGTGGGCCAGGTCTTTGGGTCCACATAATTATCTTTGTGGCCATTTGGACTTAAGTCCAAAAGTGTACAGTAATGAAGCGTGGTACAACGTCATCGATGACGTCGATCCGCAATATCTAAAGCACGAATTCATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGTATCCCAACAATCTTCCTCTGCAATCCAGGTCCAAATTCAAGCTATAAAGAATACTTGGACCAAGAAAAGAACGCGGCACTGAAGAACTGGGCTATAAGAAATGCAACCTTCGTCACCCTCAGAAGGCCACTGTTCTCAGGTACCCATCAAGGTTCAGCACAGGATAGCCAAGAAGAAATTCAGACGGAGGAGAGTGGACCTTAA
Protein Sequence MEVYISPFSPSSFDRVPDELEEWACDNVVHAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPQYLKHEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDQEKNAALKNWAIRNATFVTLRRPLFSGTHQGSAQDSQEEIQTEESGP

NCBI Accession YP_007517193.1
Location 2122-2424
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGGAACCTCATTTACACGTGCTCATCCAGTTCGAGGGCAAATACCAGTGCAAGAATCAGTGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACACTTGAGTGGGGAGAGTTCCAAATCGACGGCAGATCTGCAAGAGGAGGCCAGCAGACTGCAAACGACGCTTATGCAGCGGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGCGTCATTAGAGAACTAG
Protein Sequence MGNLIYTCSSSSRANTSARISDSSTWYPQPGQHISIRTFRELNPAPTSSPISTRTETHLSGESSKSTADLQEEASRLQTTLMQRHLTQAVSQRLLASLEN