Corchorus yellow vein mosaic virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000906695.1 |
Isolate |
India: Maharashtra |
Release date |
2015/2/22 |
Submitter |
Archana,K., Malathi,V.G. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTTAAAGTGGGCCCTCGACCAATCATATCGCTCGCTCAAAGTTAAATAACGCTCCCGCGCACTATAAGTACTTGCTCAGCAAGTTTTTCTTTGCACCATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGATGTGAGGGTCCGTGTAAGGTCCAGTCTTTTGAGTCTAGGCATGATGTAGTTCACATTGGTAAGGTTATGTGTATTAGTGATGTAACTAGGGGTACGGGTCTAACTCATAGGGTAGGGAAGCGTTTCTGTGTTAAGTCTGTTTATGTTCTGGGAAAGATATGGATGGACGAAAACATCAAGACCAAGAATCACACTAACAGTGTTATGTTCTTCCTCGTTCGTGATCGTCGTCCCGTTGATAAGCCGCAAGATTTTGGGGAGGTGTTCAACATGTTCGACAACGAGCCGAGCACCGCGACTGTCAAGAATATGCATAGGGATCGTTATCAGGTCCTTCGGAAGTGGCATGCTACGGTTACTGGTGGTCAGTATGCGTCCAAGGAACAGGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTCTATAACCAGCAAGAGGCTGGCAAGTACGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCCAATCCCGTGTATGCTACTCTGAAGATACGGATCTATTTCTACGATTCGGTCACAAATTAATAAAGATTGAATTTTATTACGTTTGAACTTTGTACATAAACTGTTTGCGTTAATACATTCCATAATACATGATCTACAGCCCTAATTACATTGTTGATACTAATTACACCCAAATTATCAATAAATTTCAACACTTGGGTCCTAAATACTCTTAAGAAACGACCAATCTGAAGGTGTGAGTTCGTCCAGATGCGGAAGGTTAGGAAACATTGGTGAATCCCCAGTGCTTTCCTCAGGTTGTAGTTGAACTGTATTCTTGCCGTTATGATGTCTTGGTTCGACAGGAAAGGCCTGCTGTGATGGTCTGTCATCCTGAAATACAGGGGATTTGGAACCGTCCAGGTAAAGGCGCCATTCTCTGCTTGAGCTGCAGTGATGTACTCCCCGGTGCGTAAATCCATGGTTGTGGCAGTTTATGTTGAGGAAGTATGAACAGCCGCAGTTAAGGTCCACTCTCCTCCGTCTGAATTTCTTCTTGGCTATCCTGTGCTGAACCTTGATGGGTACCTGAGAACAGTGGCCTTCTGAGGGTGACGAAGGTTGCATTTCTTATAGCCCAGTTCTTCAGTGCCGCGTTCTTTTCTTGGTCCAAGTATTCTTTATAGCTTGAATTTGGACCTGGATTGCAGAGGAAGATTGTTGGGATACCGCCTTTAATTTGAACTGGCTTTCCGTACTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCGTGCTTTAGATATTGCGGATCGACGTCATCGATGACGTTGTACCACGCTTCATTACTGTACACTTTTGGACTTAAGTCCAAATGGCCACAAAGATAATTATGTGGACCCAAAGACCTGGCCCACATTGTCTTCCCCGTACGACTATCACCCTCGATCACTATACTCACCGGTCTCAAGGGCCGCGCAGCGGCATGAACGACGTTATCGCACGCCCACTCTTCGAGTTCATCTGGAACTCGGTCGAAAGAAGAAGGAGAAAAAGGCGAAATATAGACCTCCATCGGAGGCGTAAAAATCCTATCTAAATTGGCATTTAAATTATGAAATTGTAATACATAGTCTTTGGGTGCTAGTTCTCTAATGACGCTAAGAGCCTCTGACTTACTGCCTGCGTTAAGTGCCGCTGCATAAGCGTCGTTTGCAGTCTGCTGGCCTCCTCTTGCAGATCTGCCGTCGATTTGGAACTCTCCCCACTCAAGTGTGTCTCCGTCCTTGTCGATATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCACTGATTCTTGCACTGGTATTTGCCCTCGAACTGGATGAGCACGTGTAAATGAGGTTCCCCATTTTCGTGTAGCTCTCTGCAGATCTTGATGAATTTTTTATTAGTTGGTGTCTGTAGGTTTTGTAATTGGGAAAGTGCCTCTTCTTTTGTGAGAGAGCACTTGGGATAAGTTAGAAAATAATTCTTTGCGTTTATTTTAAATAGGCTCTTTGGAGGCATGGTCAATGGACACCGATTGACTCTTCCAAACCATTTACTCCTGCAATCGGTGTCTGGTGTCTTATTTATACCTGGACACCAAATGGCATAAGCGTAATTTAAAAAGATAGTTTCGAATTTCAAAACCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_007517187.1
|
Location
|
120-479 |
Gene Name
|
AV2 |
Protein Name
|
pre-coat protein |
Coding Region
|
ATGTGGGATCCACTTTTGAACCAGTTCCCGGAGACTGTCTTTGGGTTGAGATGTATGCTTGCGGTTAAGTATTTGCAGTTAGTCGAGCGTACGTATTCACCCGATACAGTAGGTTACGAGCTTATTCGTGATCTGATCTCTGTAGTCCGTGCTCGGAAGTATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAA |
Protein Sequence
|
MWDPLLNQFPETVFGLRCMLAVKYLQLVERTYSPDTVGYELIRDLISVVRARKYAEATTRYEHFNARMESTPSVELRQPVQCPCRCPYCPRHLKVSGVGQQAHEQEAEDIQNVQKSGCS |
NCBI Accession
|
YP_007517188.1
|
Location
|
280-1053 |
Gene Name
|
AVI |
Protein Name
|
coat protein |
Coding Region
|
ATGCCGAAGCGACCACTCGATATGAGCATTTCAACGCCCGGATGGAAAGTACGCCGTCGGTTGAACTTCGACAGCCCGTACAGTGCCCGTGCCGCTGTCCCTATTGTCCCCGTCATCTCAAAGTCTCGGGCGTGGGCCAACAGGCCCATGAACAGGAAGCCGAGGATATACAGAATGTACAGAAGTCCGGATGTTCCTAAGGGATGTGAGGGTCCGTGTAAGGTCCAGTCTTTTGAGTCTAGGCATGATGTAGTTCACATTGGTAAGGTTATGTGTATTAGTGATGTAACTAGGGGTACGGGTCTAACTCATAGGGTAGGGAAGCGTTTCTGTGTTAAGTCTGTTTATGTTCTGGGAAAGATATGGATGGACGAAAACATCAAGACCAAGAATCACACTAACAGTGTTATGTTCTTCCTCGTTCGTGATCGTCGTCCCGTTGATAAGCCGCAAGATTTTGGGGAGGTGTTCAACATGTTCGACAACGAGCCGAGCACCGCGACTGTCAAGAATATGCATAGGGATCGTTATCAGGTCCTTCGGAAGTGGCATGCTACGGTTACTGGTGGTCAGTATGCGTCCAAGGAACAGGCTCTCGTGAAGAAGTTTGTTAGGGTTAATAATTATGTTGTCTATAACCAGCAAGAGGCTGGCAAGTACGAGAATCATAGTGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCCAATCCCGTGTATGCTACTCTGAAGATACGGATCTATTTCTACGATTCGGTCACAAATTAA |
Protein Sequence
|
MPKRPLDMSISTPGWKVRRRLNFDSPYSARAAVPIVPVISKSRAWANRPMNRKPRIYRMYRSPDVPKGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN |
NCBI Accession
|
YP_007517189.1
|
Location
|
583-987 |
Gene Name
|
AC5 |
Protein Name
|
AC5 |
Coding Region
|
ATGAGTACATGCCATATACAACATCAAAGCATTCTCACTATGATTCTCGTACTTGCCAGCCTCTTGCTGGTTATAGACAACATAATTATTAACCCTAACAAACTTCTTCACGAGAGCCTGTTCCTTGGACGCATACTGACCACCAGTAACCGTAGCATGCCACTTCCGAAGGACCTGATAACGATCCCTATGCATATTCTTGACAGTCGCGGTGCTCGGCTCGTTGTCGAACATGTTGAACACCTCCCCAAAATCTTGCGGCTTATCAACGGGACGACGATCACGAACGAGGAAGAACATAACACTGTTAGTGTGATTCTTGGTCTTGATGTTTTCGTCCATCCATATCTTTCCCAGAACATAAACAGACTTAACACAGAAACGCTTCCCTACCCTATGAGTTAG |
Protein Sequence
|
MSTCHIQHQSILTMILVLASLLLVIDNIIINPNKLLHESLFLGRILTTSNRSMPLPKDLITIPMHILDSRGARLVVEHVEHLPKILRLINGTTITNEEEHNTVSVILGLDVFVHPYLSQNINRLNTETLPYPMS |
NCBI Accession
|
YP_007517190.1
|
Location
|
1050-1454 |
Gene Name
|
AC3 |
Protein Name
|
replication enhancement protein ReP |
Coding Region
|
ATGGATTTACGCACCGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGCCTTTACCTGGACGGTTCCAAATCCCCTGTATTTCAGGATGACAGACCATCACAGCAGGCCTTTCCTGTCGAACCAAGACATCATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGAACTCACACCTTCAGATTGGTCGTTTCTTAAGAGTATTTAGGACCCAAGTGTTGAAATTTATTGATAATTTGGGTGTAATTAGTATCAACAATGTAATTAGGGCTGTAGATCATGTATTATGGAATGTATTAACGCAAACAGTTTATGTACAAAGTTCAAACGTAATAAAATTCAATCTTTATTAA |
Protein Sequence
|
MDLRTGEYITAAQAENGAFTWTVPNPLYFRMTDHHSRPFLSNQDIITARIQFNYNLRKALGIHQCFLTFRIWTNSHLQIGRFLRVFRTQVLKFIDNLGVISINNVIRAVDHVLWNVLTQTVYVQSSNVIKFNLY |
NCBI Accession
|
YP_007517191.1
|
Location
|
1195-1599 |
Gene Name
|
AC2 |
Protein Name
|
transcription activation protein TrAp |
Coding Region
|
ATGCAACCTTCGTCACCCTCAGAAGGCCACTGTTCTCAGGTACCCATCAAGGTTCAGCACAGGATAGCCAAGAAGAAATTCAGACGGAGGAGAGTGGACCTTAACTGCGGCTGTTCATACTTCCTCAACATAAACTGCCACAACCATGGATTTACGCACCGGGGAGTACATCACTGCAGCTCAAGCAGAGAATGGCGCCTTTACCTGGACGGTTCCAAATCCCCTGTATTTCAGGATGACAGACCATCACAGCAGGCCTTTCCTGTCGAACCAAGACATCATAACGGCAAGAATACAGTTCAACTACAACCTGAGGAAAGCACTGGGGATTCACCAATGTTTCCTAACCTTCCGCATCTGGACGAACTCACACCTTCAGATTGGTCGTTTCTTAAGAGTATTTAG |
Protein Sequence
|
MQPSSPSEGHCSQVPIKVQHRIAKKKFRRRRVDLNCGCSYFLNINCHNHGFTHRGVHHCSSSREWRLYLDGSKSPVFQDDRPSQQAFPVEPRHHNGKNTVQLQPEESTGDSPMFPNLPHLDELTPSDWSFLKSI |
NCBI Accession
|
YP_007517192.1
|
Location
|
1496-2053 |
Gene Name
|
AC1 |
Protein Name
|
REP |
Coding Region
|
ATGGAGGTCTATATTTCGCCTTTTTCTCCTTCTTCTTTCGACCGAGTTCCAGATGAACTCGAAGAGTGGGCGTGCGATAACGTCGTTCATGCCGCTGCGCGGCCCTTGAGACCGGTGAGTATAGTGATCGAGGGTGATAGTCGTACGGGGAAGACAATGTGGGCCAGGTCTTTGGGTCCACATAATTATCTTTGTGGCCATTTGGACTTAAGTCCAAAAGTGTACAGTAATGAAGCGTGGTACAACGTCATCGATGACGTCGATCCGCAATATCTAAAGCACGAATTCATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAGTACGGAAAGCCAGTTCAAATTAAAGGCGGTATCCCAACAATCTTCCTCTGCAATCCAGGTCCAAATTCAAGCTATAAAGAATACTTGGACCAAGAAAAGAACGCGGCACTGAAGAACTGGGCTATAAGAAATGCAACCTTCGTCACCCTCAGAAGGCCACTGTTCTCAGGTACCCATCAAGGTTCAGCACAGGATAGCCAAGAAGAAATTCAGACGGAGGAGAGTGGACCTTAA |
Protein Sequence
|
MEVYISPFSPSSFDRVPDELEEWACDNVVHAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNEAWYNVIDDVDPQYLKHEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDQEKNAALKNWAIRNATFVTLRRPLFSGTHQGSAQDSQEEIQTEESGP |
NCBI Accession
|
YP_007517193.1
|
Location
|
2122-2424 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGGAACCTCATTTACACGTGCTCATCCAGTTCGAGGGCAAATACCAGTGCAAGAATCAGTGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATATCGACAAGGACGGAGACACACTTGAGTGGGGAGAGTTCCAAATCGACGGCAGATCTGCAAGAGGAGGCCAGCAGACTGCAAACGACGCTTATGCAGCGGCACTTAACGCAGGCAGTAAGTCAGAGGCTCTTAGCGTCATTAGAGAACTAG |
Protein Sequence
|
MGNLIYTCSSSSRANTSARISDSSTWYPQPGQHISIRTFRELNPAPTSSPISTRTETHLSGESSKSTADLQEEASRLQTTLMQRHLTQAVSQRLLASLEN |