Corchorus yellow spot virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000867685.1
Isolate Mexico: Yucatan
Release date 2015/2/13
Submitter Hernandez-Zepeda,C., Idris,A.M., Carnevali,G., Brown,J.K., Moreno-Valenzuela,O.A.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_008492
ACCGGATGGCCGCGCGATTTTTCCCCCCCCTCGCGCGCACGCTCCTCTTTAATTTGAATTAAAGCGCCCACTTGCGCTATCGTCCAATCATTTTGCGCCTGACGAGTCTAGATATTTGCAACAACTTGGGCCCTAAGTTGTTGATTGGTTATAAATTAAAGAGGCTTTGGCCCACTGTCTTTAACTCAAAATGCCTAAGCGCGATCTCCCATGGCGCTCGATCGCGGGAACTTCAAAGGTTAGCCGCAATGCTAATTATTCTCCTCGTGCAGGAAGTGGGCCAAGAGTAAACAAGGCCGCTGAATGGGTTAACAGGCCCATGTACAGAAAGCCCAGGATCTACCGGATGAGGAGGACTCCTGATGTGCCCAGAGGCTGTGAAGGGCCTTGTAAGGTCCAGTCCTATGAACAGCGTCACGATATCTCACATGTCGGTAAGGTTATGTGCATCTCCGATGTGACACGTGGTAATGGGATCACCCATCGTGTTGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTCGGTAAGATCTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGCACGCCAATGGATTTCGGTCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCTACGGTGAAGAACGATCTACGAGATCGTTACCAGGTCATGCACAAGTTCTATGGCAAAGTGACAGGTGGACAGTATGCCAGCAATGAACAGTCTATAGTGCAGAGATTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAAGAGGCTGGCAAGTACGAGAATCACACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTTAAGATTCGAATCTACTTCTACGATTCGATAACGAATTAATAAAATTTAAATTTTATTGAATGATTTTCCAGTACATAGTTGACATACGATCTGTCCGTTGCGAATCGAACAGCTCTAATTACATTGTTAAGACTAATGACGCCTAATTGATCTAAGTACATATGCACTAAGTGCTTAAGTCTAGCTAAATAGATCGGCCCAGAAGCTGTCATCGATGTCGTCCAGACTTGGAAATTCAGGTAAGCTTTGTGGAGATGCAACGCTCTCCTCAGGTTGTGGTTGAACCTTATCTGTACGTGGTAGACCCTGGTCCTCGTGTATAACGGTTCCTCTACTCGGTACATCTTGAAATAGAGGGGATTTTCGATCTCCCAGATATAGACGCCATTCTCTGCCTGACGTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGCCCGGTACAGCCTATGTGAAAGTATATGGAGCACCCGCACTCCAGATCAATCCGCCTCCTCCTGATGGCCCTCTTCTTGGCTTGCCTGTGTGCTGYCTTGATAGAGGGCGGATGTGAGGGTGATGAAGACCGCATTCTTGAGAGTCCAGTTCCTGAGAGCTGAGTTTTCCTCTTTGTCCAGGAAATCTTTATAGCTGGCACCCTCACCTGGATTGCAAAGCACGATTGATGGGATCCCTCCTTTAATTTGAACTGGCTTGCCGTATTTGCAATTTGACTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGTCATCAATGACGTTATACTCCACTTCGTTCGAATAGCACCGGGCATTGAAATCCAGGTGTCCACTAAGATAATTATGTGGGCCTAACGCACGAGCCCACATCGTCTTCCCTGTCCTCGAGTCACCCTCTACTATGAGACTAACAGGTCTTTCCGGCCGCGCAGCGGAACCTCTCCCAAAATAATCGTCCGCCCACTCTTGCATCTCGTCCGGCACGTTAGTGAAAGAGGAGAGGGGAAACGGAGGTTCCCAAAGCTTTGGAGGCTTACTGAAAATCCTATCGAGGTTACTGGATAGGTTGTGAAACTGAAAGAGATACTTCTCCGGCAGCTTCTCTTTGATGATTTTCATAGCCTCCTCCTTTGTTCCAGAGTTCAACGCCTCGGCGGCTGCATCGTTAGATGTCTGCTGACCTCCTCGAGCACTTCTACCGTCGATCTGGAACACCCCCCATTCGATGGTGTCGCCGTCTTTCTCGACGTAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTATTGACCTGGTTGGGGACACCAGATCGAAGAATCTGTTATTCGTGCAGTTGTATTTCCCTTCGAACTGTATGAGCACGTGGAGATGAGGCTCCCCATTCTCATGAAGTTCTCTGCAGATCTTGATGAACTTCTTGTTCACTGGAGTATTTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTAGTAAGAGAGCACTGGGGGTATGTGAGGAAATAGTTTTTGGCTTTGATTGAGAAAGAACCCTTTCGTGGCATATTTGTAAATAAGGGTGTTCCCCCGATAGCTCTCTCGCTCAAACTTCCTATGAATTGGGGGAACTGGGGGAACTTATATAGTAGAAGTTCCTAAAGGCAATGCAACACGTGGCGGCCATCCGTTATAATATT

NC_008493
ACCGGATGGCCGCGCGCCCCCCCCCTGGTGCCCGTTCTCGCACACGCGCTCCCCTGGTGTGTTGCTGGCACGCGCCCCCTCATTGGTGCGGGTCCTTCACGCTCCATCTTTTGAGTGGCCTTTAATTCAAATTAAAGGATAATGCTTTCTCGCGCGAATTGCTTTTATGATTTGAATTACTGTCGCGCGATGACTGACTATGGCCCATTGTACCATGTGAAGGACGTGGCTATTTTTCGACCATGCCGCTGCGTTTATTTGTGTCTGATGTTGGACGAATTATTTATATATTGTAGTGGACATGTATGTCATGTACAACCCACGCAGCGTCTAAACACGTTTATTTTCTATCTTTAATTGTGTTTCATTTGCATTTGATTTTATGATCATGTATCCTGTGAGGAATAAACGTGTTGGTTACTTCCCTAATCGACGATATACCTATCGTAATAATGTGTTTAACCGTTCAGCCTATGTGAAACGACATGATGGGAAACGACGTGGAAGTCGATATGTCAAGCCCAATGACGAGCCCAAGATGTCAGTCCAATCCATACACGAAAATCAGTATGGCACTGATTTTGTCATGGCCCATAATTCAGCTATCTCGACGTTCATCAGTTACCCGGACTTGGGTAAGATGGAACCGGGCCGAAGCAGGTCATATATCAAGTTGAAACGACTCCGTTTCAAAGGGACGGTGAAGATTGAACGTGTGCAATCGGATATGAACATGGACGGGACTCTCCCCAAAATAGAAGGAGTCTTCTCTCTTGTTGTTGTTGTTGATCGGAAACCCCACTTGGGTCCAAGTGGTTGTCTGCATACATTCGACGAGCTGTTCGGAGCAATCATTCACAGCCATGGCAATCTCAGCATTGTCCCTTCTCTGAAAGACCGTTATTATATTCGCCATGTGTTCAAACGCGTATTGTCATTGGAGAATGACACGCTGATGGTCGACGTTGAAGGATCTACAGCTCTATCTAACAGGCGTTTTAATTGTTGGTCCACGTTCAAAGACGTTGATCGTGATGCATGCAAGGGTGTTTATGATAATATAAGCAAGAACGCCCTGTTAATTTATTATTGCTGGGTGTCCGATACGCCTTCGAAGGCATCTAATTATGTATCTTTTGATCTTGATTATGTTGGTTAATGTAATAAATGTTGTTTATCCAAAACTGATTATCTTGATATGATAAATCAAAAGATAACATTTATTTCAATGACTTGGCTTGAGAAGCTTGACAGTTATTATTAATACATTCTTGGACCGTAGTCCTAACTATTTCGTTCAATTGGCCCATGGACAATGTGATGTTGGACTCCGCTCTCTGGGCTCCCACGATTGAAGCAGACTCTCCTGGATCTAGAACGCTCGTCCCGAGCCTGTTCAGGTGTCTGTATGGGTGGAGCTCGTTCTCCACCTCTGAGTCCGCCTCAGATTGGCCCGTACCTATTGTACTCCTGGAAGCCCATGACTCGCCAGGCCTTATATCGATTGGGCCTCGTAACCCAACTCTGGACATTGATGCGCATCTGATGGGCTTCCTYTCCGTTCTTCCGTAGTCGACGTGCCAAAAGTCCACATCCTTGTCCGTGAACTGTTTGGAAAGGATCTTCACTGTTGGTGCCCGGAACGGGATATCCACCGAATGTTTGGCCGTCGACAGTTTCAGCTTCCCTTTGAACTTGGCGAAGTGGGTCCTCTGATGAACATTCGTATCGGAAACTCTGTAATAGAGTTTCCACGGGATTGGGTCTTTGAGGGAGAAAAAGGAAGCTGAGAAGTAGTGGAGATCTATGTTGCATCTGATCGGAARAGTCCACGATGCCTGTAATGATTCGTTATCTGTCATCCTTTTGTCGTGGATCTCCACTATTACCGTCCCGGCGGCGTTGATTGGTACCTGTTGCCTGTACTCTATGACGCAGTGGTCGATTTTCATACAGCTCCGATGAAGCCTTGCCGTCAACTGCGCCGCCGTGGAAGGAAATTGCAGTATTATTTCAGTCAGGTCATGAGAAAGCTGATACTCGTCGCGGTGAGACTCTATGTAATTGAAGGCATGTGGAGGATTGACTAGCTGAGATTCCATATGAAGAAGAAAGGCCGCGCAGCGGAACCGATTGATGAAGTTGAATCGGGAAAGAGATGAACAACTGATGAACAAGATGATCAAGTCTGGAAAGCTCTCCTTTTTGATCTCGAAGAAGGTAAATGTGTATGTGTCTGACAGTTTCTGTGTTTGAGAGTGTTATATGTCTATGAATAATAATTTTGAGGAAATGGAAAACGGGAAACTTGTTCAAGAATTATGTTTTTTGAGAAAGAAAAGAGTGTTGATGAACAAATTGTAGAATTCTGGAAATGAAAGAGAGAATTTGTATGAACCCAGAACTTCTGGGTTGATGGGTATTTAAATTGGGAAAGTGTTCATCAACTGATGGCAGTTTTGTAAATATGGATGTTCCCCCGATAGCTCTCTCGCTCAAAATTCCTATGAATTGGGGGAACTGGGGGAACTTATATAGTAGAAGTTCCTAAAGGCAGATCAACACGTGGCGGCCATCCGTTATAATATT

Gene Information

NCBI Accession YP_794162.1
Location 191-946
Gene Name AV1
Protein Name coat protein
Coding Region ATGCCTAAGCGCGATCTCCCATGGCGCTCGATCGCGGGAACTTCAAAGGTTAGCCGCAATGCTAATTATTCTCCTCGTGCAGGAAGTGGGCCAAGAGTAAACAAGGCCGCTGAATGGGTTAACAGGCCCATGTACAGAAAGCCCAGGATCTACCGGATGAGGAGGACTCCTGATGTGCCCAGAGGCTGTGAAGGGCCTTGTAAGGTCCAGTCCTATGAACAGCGTCACGATATCTCACATGTCGGTAAGGTTATGTGCATCTCCGATGTGACACGTGGTAATGGGATCACCCATCGTGTTGGTAAGCGTTTCTGTGTTAAGTCTGTGTATATCCTCGGTAAGATCTGGATGGATGAGAACATCAAGCTCAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTCAGGGACCGTAGACCGTATGGCACGCCAATGGATTTCGGTCAGGTGTTCAACATGTTCGACAACGAGCCCAGCACTGCTACGGTGAAGAACGATCTACGAGATCGTTACCAGGTCATGCACAAGTTCTATGGCAAAGTGACAGGTGGACAGTATGCCAGCAATGAACAGTCTATAGTGCAGAGATTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAAGAGGCTGGCAAGTACGAGAATCACACGGAGAACGCTCTGTTATTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTTAAGATTCGAATCTACTTCTACGATTCGATAACGAATTAA
Protein Sequence MPKRDLPWRSIAGTSKVSRNANYSPRAGSGPRVNKAAEWVNRPMYRKPRIYRMRRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYGKVTGGQYASNEQSIVQRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_794163.1
Location 943-1341
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATCGAAAATCCCCTCTATTTCAAGATGTACCGAGTAGAGGAACCGTTATACACGAGGACCAGGGTCTACCACGTACAGATAAGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAATTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGCCGATCTATTTAGCTAGACTTAAGCACTTAGTGCATATGTACTTAGATCAATTAGGCGTCATTAGTCTTAACAATGTAATTAGAGCTGTTCGATTCGCAACGGACAGATCGTATGTCAACTATGTACTGGAAAATCATTCAATAAAATTTAAATTTTATTAA
Protein Sequence MDSRTGELITARQAENGVYIWEIENPLYFKMYRVEEPLYTRTRVYHVQIRFNHNLRRALHLHKAYLNFQVWTTSMTASGPIYLARLKHLVHMYLDQLGVISLNNVIRAVRFATDRSYVNYVLENHSIKFKFY

NCBI Accession YP_794164.1
Location 1088-1477
Gene Name AC2
Protein Name transactivator protein
Coding Region ATGCGGTCTTCATCACCCTCACATCCGCCCTCTATCAAGRCAGCACACAGGCAAGCCAAGAAGAGGGCCATCAGGAGGAGGCGGATTGATCTGGAGTGCGGGTGCTCCATATACTTTCACATAGGCTGTACCGGGCATGGATTCACGCACAGGGGAACTCATCACTGCACGTCAGGCAGAGAATGGCGTCTATATCTGGGAGATCGAAAATCCCCTCTATTTCAAGATGTACCGAGTAGAGGAACCGTTATACACGAGGACCAGGGTCTACCACGTACAGATAAGGTTCAACCACAACCTGAGGAGAGCGTTGCATCTCCACAAAGCTTACCTGAATTTCCAAGTCTGGACGACATCGATGACAGCTTCTGGGCCGATCTATTTAGCTAG
Protein Sequence MRSSSPSHPPSIKXAHRQAKKRAIRRRRIDLECGCSIYFHIGCTGHGFTHRGTHHCTSGREWRLYLGDRKSPLFQDVPSRGTVIHEDQGLPRTDKVQPQPEESVASPQSLPEFPSLDDIDDSFWADLFS

NCBI Accession YP_794165.1
Location 1389-2474
Gene Name AC1
Protein Name REP protein
Coding Region ATGCCACGAAAGGGTTCTTTCTCAATCAAAGCCAAAAACTATTTCCTCACATACCCCCAGTGCTCTCTTACTAAAGAAGAAGCACTTTCCCAATTACAAAACCTAAATACTCCAGTGAACAAGAAGTTCATCAAGATCTGCAGAGAACTTCATGAGAATGGGGAGCCTCATCTCCACGTGCTCATACAGTTCGAAGGGAAATACAACTGCACGAATAACAGATTCTTCGATCTGGTGTCCCCAACCAGGTCAATACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTACGTCGAGAAAGACGGCGACACCATCGAATGGGGGGTGTTCCAGATCGACGGTAGAAGTGCTCGAGGAGGTCAGCAGACATCTAACGATGCAGCCGCCGAGGCGTTGAACTCTGGAACAAAGGAGGAGGCTATGAAAATCATCAAAGAGAAGCTGCCGGAGAAGTATCTCTTTCAGTTTCACAACCTATCCAGTAACCTCGATAGGATTTTCAGTAAGCCTCCAAAGCTTTGGGAACCTCCGTTTCCCCTCTCCTCTTTCACTAACGTGCCGGACGAGATGCAAGAGTGGGCGGACGATTATTTTGGGAGAGGTTCCGCTGCGCGGCCGGAAAGACCTGTTAGTCTCATAGTAGAGGGTGACTCGAGGACAGGGAAGACGATGTGGGCTCGTGCGTTAGGCCCACATAATTATCTTAGTGGACACCTGGATTTCAATGCCCGGTGCTATTCGAACGAAGTGGAGTATAACGTCATTGATGACGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAGTCAAATTGCAAATACGGCAAGCCAGTTCAAATTAAAGGAGGGATCCCATCAATCGTGCTTTGCAATCCAGGTGAGGGTGCCAGCTATAAAGATTTCCTGGACAAAGAGGAAAACTCAGCTCTCAGGAACTGGACTCTCAAGAATGCGGTCTTCATCACCCTCACATCCGCCCTCTATCAAGRCAGCACACAGGCAAGCCAAGAAGAGGGCCATCAGGAGGAGGCGGATTGA
Protein Sequence MPRKGSFSIKAKNYFLTYPQCSLTKEEALSQLQNLNTPVNKKFIKICRELHENGEPHLHVLIQFEGKYNCTNNRFFDLVSPTRSIHFHPNIQGAKSSSDVKSYVEKDGDTIEWGVFQIDGRSARGGQQTSNDAAAEALNSGTKEEAMKIIKEKLPEKYLFQFHNLSSNLDRIFSKPPKLWEPPFPLSSFTNVPDEMQEWADDYFGRGSAARPERPVSLIVEGDSRTGKTMWARALGPHNYLSGHLDFNARCYSNEVEYNVIDDVAPHYLKLKHWKELLGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENSALRNWTLKNAVFITLTSALYQXSTQASQEEGHQEEAD

NCBI Accession YP_794166.1
Location 383-1159
Gene Name BV1
Protein Name BV1
Coding Region ATGATCATGTATCCTGTGAGGAATAAACGTGTTGGTTACTTCCCTAATCGACGATATACCTATCGTAATAATGTGTTTAACCGTTCAGCCTATGTGAAACGACATGATGGGAAACGACGTGGAAGTCGATATGTCAAGCCCAATGACGAGCCCAAGATGTCAGTCCAATCCATACACGAAAATCAGTATGGCACTGATTTTGTCATGGCCCATAATTCAGCTATCTCGACGTTCATCAGTTACCCGGACTTGGGTAAGATGGAACCGGGCCGAAGCAGGTCATATATCAAGTTGAAACGACTCCGTTTCAAAGGGACGGTGAAGATTGAACGTGTGCAATCGGATATGAACATGGACGGGACTCTCCCCAAAATAGAAGGAGTCTTCTCTCTTGTTGTTGTTGTTGATCGGAAACCCCACTTGGGTCCAAGTGGTTGTCTGCATACATTCGACGAGCTGTTCGGAGCAATCATTCACAGCCATGGCAATCTCAGCATTGTCCCTTCTCTGAAAGACCGTTATTATATTCGCCATGTGTTCAAACGCGTATTGTCATTGGAGAATGACACGCTGATGGTCGACGTTGAAGGATCTACAGCTCTATCTAACAGGCGTTTTAATTGTTGGTCCACGTTCAAAGACGTTGATCGTGATGCATGCAAGGGTGTTTATGATAATATAAGCAAGAACGCCCTGTTAATTTATTATTGCTGGGTGTCCGATACGCCTTCGAAGGCATCTAATTATGTATCTTTTGATCTTGATTATGTTGGTTAA
Protein Sequence MIMYPVRNKRVGYFPNRRYTYRNNVFNRSAYVKRHDGKRRGSRYVKPNDEPKMSVQSIHENQYGTDFVMAHNSAISTFISYPDLGKMEPGRSRSYIKLKRLRFKGTVKIERVQSDMNMDGTLPKIEGVFSLVVVVDRKPHLGPSGCLHTFDELFGAIIHSHGNLSIVPSLKDRYYIRHVFKRVLSLENDTLMVDVEGSTALSNRRFNCWSTFKDVDRDACKGVYDNISKNALLIYYCWVSDTPSKASNYVSFDLDYVG

NCBI Accession YP_794167.1
Location 1221-2102
Gene Name BC1
Protein Name movement protein
Coding Region ATGGAATCTCAGCTAGTCAATCCTCCACATGCCTTCAATTACATAGAGTCTCACCGCGACGAGTATCAGCTTTCTCATGACCTGACTGAAATAATACTGCAATTTCCTTCCACGGCGGCGCAGTTGACGGCAAGGCTTCATCGGAGCTGTATGAAAATCGACCACTGCGTCATAGAGTACAGGCAACAGGTACCAATCAACGCCGCCGGGACGGTAATAGTGGAGATCCACGACAAAAGGATGACAGATAACGAATCATTACAGGCATCGTGGACTYTTCCGATCAGATGCAACATAGATCTCCACTACTTCTCAGCTTCCTTTTTCTCCCTCAAAGACCCAATCCCGTGGAAACTCTATTACAGAGTTTCCGATACGAATGTTCATCAGAGGACCCACTTCGCCAAGTTCAAAGGGAAGCTGAAACTGTCGACGGCCAAACATTCGGTGGATATCCCGTTCCGGGCACCAACAGTGAAGATCCTTTCCAAACAGTTCACGGACAAGGATGTGGACTTTTGGCACGTCGACTACGGAAGAACGGARAGGAAGCCCATCAGATGCGCATCAATGTCCAGAGTTGGGTTACGAGGCCCAATCGATATAAGGCCTGGCGAGTCATGGGCTTCCAGGAGTACAATAGGTACGGGCCAATCTGAGGCGGACTCAGAGGTGGAGAACGAGCTCCACCCATACAGACACCTGAACAGGCTCGGGACGAGCGTTCTAGATCCAGGAGAGTCTGCTTCAATCGTGGGAGCCCAGAGAGCGGAGTCCAACATCACATTGTCCATGGGCCAATTGAACGAAATAGTTAGGACTACGGTCCAAGAATGTATTAATAATAACTGTCAAGCTTCTCAAGCCAAGTCATTGAAATAA
Protein Sequence MESQLVNPPHAFNYIESHRDEYQLSHDLTEIILQFPSTAAQLTARLHRSCMKIDHCVIEYRQQVPINAAGTVIVEIHDKRMTDNESLQASWTXPIRCNIDLHYFSASFFSLKDPIPWKLYYRVSDTNVHQRTHFAKFKGKLKLSTAKHSVDIPFRAPTVKILSKQFTDKDVDFWHVDYGRTERKPIRCASMSRVGLRGPIDIRPGESWASRSTIGTGQSEADSEVENELHPYRHLNRLGTSVLDPGESASIVGAQRAESNITLSMGQLNEIVRTTVQECINNNCQASQAKSLK