Chino del tomate Amazonas virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002821945.1
Isolate Brazil
Release date 2018/8/25
Submitter Fonseca,M.E.N., Boiteux,L.S., Fernandes,N.A.N., Costa,A.F.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038443
ACCGGATGGCCGCGCTTTTTTTGTCCTGGCCTTTAATTTCGAATTAAAGGTGGTCCTTCGCACTTTCGTCCAATTATATCGCGCCTGATGTGTCTAGATATTTTAAACAACTTGGGAGCCAAGTTGTGATGTCGATATAAAGGAAAGGACCACTGGGCCACATGCTTCATGTCGAAATGCCGAAGCGCGATCTCCCATGGCGCTCGATGGCGGGAACCTCTAAGGTCAGCCGCAATGTCAACTCCTCGCCTCGTGCAGGTATCGGCCCAAAACTCAACAAGGCCTCTGAATGGGTCAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGCACGCTCAGATCTCCCGATGTGCCTAGAGGGTGTGAAGGGCCGTGTAAGGTCCAGTCCTTATGAACCAGGCGCCACGAACATATCACATGTCGGCAAGGTAATGTGTATTTCTGACGTGACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATTCTAGGTAAGATATGGATGGATGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTTAGAGACCGTAGACCGTATGGAACGCCCATGGATTTTGGACAAGTGTTCAACATGTTCGACAACGAACCTAGCACTGCCACGATCAAGAACGATCTCCGTGATCGTTACCAGGTCATGCACAGGTTCTATGGGAAGGTGACAGGTGGACAGTATGCGAGCAACGAGCAGGCTATTGTCAGGCGATTCTGGAAGGTCAACAATCATGTGGTCTACAATCATCAGGAGGCTGGAAAGTATGAGAATCACACAGAGAATGCTTTGTTACTGTACATGGCATGCACTCATGCCTCAAACCCTGTATATGCTACTCTGAAGATCCGGATCTATTTTTATGATTCGGGTTTCAAATTAATAAAATTTGAATTTTATTTAATGATTCTCTAGTACAGAAGTTACATAACGTTTGTCTGTTGCGAATTGAACAGCTCTAATTACATTATTAATGGAAATAACACCTAACTGGTCTAAGTACAACATAACTAAATGCCTAAATTTATTTAAATATGTCGTCCCAGAAGCTGTCACTGATGTCGTCCAGACTTGGAAATTCAGGATGGCTTTGTGTAGATTCAACTCCTTCCTGAGGTTGTGATTGAACCGTATTTGTATGTGATACACCCTGGAGTTCGTGTACATGGGTGTCTCTACGTTGTATATCTTGAAATATAGGGGATTTGTTATCTCCCAGATATACACGCCATTCTCTGCCTGATGTGCAGTGATGAGTTCCTCTGTGCGTGAATCCATGCCCAGTGCAGCCTATGTGGAGGTAGATGGAGCAACCGCACTCTAGATCAATGCGCCTCCTCCTGATGGCCCTCTTCTTGGCTTGCCTGTGTGCTCTCTTTATTGAGGGGGGAGCTGAGGGTGATGAAGAGCGCATTCTTGAGGGTCCAGTTCCTGAGTGATGCGTTTTCCTCTTTGTTGAGGAAATCTTGATAGCTGGAACCCTGACCCTGGATTGCAAAGCACGATTGATGGGATTCCTCCTTGAATTTGAACTGGCTTGCCGTACTTGCAATTTGACTGCCAGTCTTTTTGTGACCCAATCAATTCTTTCCAGTGCTTTAGCTTTAGATAGTGCGGTGCGACGGCAGCAATGACGGTATACTCCACTTGATTTGAATAGACCGTACCATTGAAATCCAGATGTCCACTCAGATAGGTATGTGGGCCTAACGCACGAGCCCACATTGTCTTTCCTGTTCTTGAATTCACCCTCGATGATGATACTAATCGGTCTCTCCGGCCGCGCAGCGGCACCTCTCCCGAAATAATTATCTGCCCACTCTTGCATCTCTTCTGGAACGTTAGTGAATGAGGAGAGGGGAAACGGAGGAATCCATGGTTCCGGAGCCTTAGCAAAAATCCTTTCTGCATTTGCTTTGAGATTATGATAATTTGCAAAAAAGTCTCTGGGTTGTTCCTCTCTGAATATATTGAGGGCCTGGGTTGCATCGCCTGCATTGAGAGCCTTGGCATAAGAGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCGTCCATCGATCTGGAAAACTCCATGATCAATGAAGTCTCCGTCTTTCTCCATATAGGCTTTGACGTCTGAGCTTGCTTCTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGATCTGGTTGGGGATACCAAGTCGAAGAATCTGTTGTTGGTGCATTGGTATTTCCCTTCGAATTGGATAAGCACATGGAGATGAGGCTCCCCATTCTCGTGAAGCTCTCTTGCAACACGAATGAATAATTTGTTAGTTGGGGTTTGAAGGTTGATGAATTGGGAAAGTGCATCGTCTTTGGTGAGAGAGCAATGAGGATAAGTAAGGAAATAGTTTTTGGAAGAGATTTTGAAACGCTTGGGTGGTGGCATTTTGGTAATATAGGCTTGTCCCCCCAGTTGGAGCTCTCTGAAAACTGTGACATGAATTGGGGTAATGGGGTACATTATATAGTAGAAGTCTCAATAGAACTTCGTATCTGAATCCGCACACGTGGCGGCCATCCGTTATAATATT

Gene Information

NCBI Accession YP_009506396.1
Location 169-969
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAATGCCGAAGCGCGATCTCCCATGGCGCTCGATGGCGGGAACCTCTAAGGTCAGCCGCAATGTCAACTCCTCGCCTCGTGCAGGTATCGGCCCAAAACTCAACAAGGCCTCTGAATGGGTCAACAGGCCCATGTATAGGAAGCCCAGGATCTATCGCACGCTCAGATCTCCCGATGTGCCTAGAGGGTGTGAAGGGCCGTGTAAGGTCCAGTCCTTATGAACCAGGCGCCACGAACATATCACATGTCGGCAAGGTAATGTGTATTTCTGACGTGACACGTGGTAATGGCATTACCCACCGTGTGGGTAAGCGTTTTTGTGTTAAGTCTGTGTACATTCTAGGTAAGATATGGATGGATGAGAACATCAAGCTGAAGAACCACACGAACAGTGTCATGTTCTGGTTGGTTAGAGACCGTAGACCGTATGGAACGCCCATGGATTTTGGACAAGTGTTCAACATGTTCGACAACGAACCTAGCACTGCCACGATCAAGAACGATCTCCGTGATCGTTACCAGGTCATGCACAGGTTCTATGGGAAGGTGACAGGTGGACAGTATGCGAGCAACGAGCAGGCTATTGTCAGGCGATTCTGGAAGGTCAACAATCATGTGGTCTACAATCATCAGGAGGCTGGAAAGTATGAGAATCACACAGAGAATGCTTTGTTACTGTACATGGCATGCACTCATGCCTCAAACCCTGTATATGCTACTCTGAAGATCCGGATCTATTTTTATGATTCGGGTTTCAAATTAATAAAATTTGAATTTTATTTAATGATTCTCTAG
Protein Sequence MSKCRSAISHGARWREPLRSAAMSTPRLVQVSAQNSTRPLNGSTGPCIGSPGSIARSDLPMCLEGVKGRVRSSPYEPGATNISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATIKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSGFKLIKFEFYLMIL

NCBI Accession YP_009506397.1
Location 955-1332
Gene Name AC2
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGAGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATATACAACGTAGAGACACCCATGTACACGAACTCCAGGGTGTATCACATACAAATACGGTTCAATCACAACCTCAGGAAGGAGTTGAATCTACACAAAGCCATCCTGAATTTCCAAGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAAATTTAGGCATTTAGTTATGTTGTACTTAGACCAGTTAGGTGTTATTTCCATTAATAATGTAATTAGAGCTGTTCAATTCGCAACAGACAAACGTTATGTAACTTCTGTACTAGAGAATCATTAA
Protein Sequence MDSRTEELITAHQAENGVYIWEITNPLYFKIYNVETPMYTNSRVYHIQIRFNHNLRKELNLHKAILNFQVWTTSVTASGTTYLNKFRHLVMLYLDQLGVISINNVIRAVQFATDKRYVTSVLENH

NCBI Accession YP_009506398.1
Location 1079-1468
Gene Name AC3
Protein Name transactivator protein
Coding Region ATGCGCTCTTCATCACCCTCAGCTCCCCCCTCAATAAAGAGAGCACACAGGCAAGCCAAGAAGAGGGCCATCAGGAGGAGGCGCATTGATCTAGAGTGCGGTTGCTCCATCTACCTCCACATAGGCTGCACTGGGCATGGATTCACGCACAGAGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTGTATATCTGGGAGATAACAAATCCCCTATATTTCAAGATATACAACGTAGAGACACCCATGTACACGAACTCCAGGGTGTATCACATACAAATACGGTTCAATCACAACCTCAGGAAGGAGTTGAATCTACACAAAGCCATCCTGAATTTCCAAGTCTGGACGACATCAGTGACAGCTTCTGGGACGACATATTTAAATAA
Protein Sequence MRSSSPSAPPSIKRAHRQAKKRAIRRRRIDLECGCSIYLHIGCTGHGFTHRGTHHCTSGREWRVYLGDNKSPIFQDIQRRDTHVHELQGVSHTNTVQSQPQEGVESTQSHPEFPSLDDISDSFWDDIFK

NCBI Accession YP_009506399.1
Location 1432-2523
Gene Name AC1
Protein Name replication-associated protein
Coding Region ATGTCACAGTTTTCAGAGAGCTCCAACTGGGGGGACAAGCCTATATTACCAAAATGCCACCACCCAAGCGTTTCAAAATCTCTTCCAAAAACTATTTCCTTACTTATCCTCATTGCTCTCTCACCAAAGACGATGCACTTTCCCAATTCATCAACCTTCAAACCCCAACTAACAAATTATTCATTCGTGTTGCAAGAGAGCTTCACGAGAATGGGGAGCCTCATCTCCATGTGCTTATCCAATTCGAAGGGAAATACCAATGCACCAACAACAGATTCTTCGACTTGGTATCCCCAACCAGATCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAGAAGCAAGCTCAGACGTCAAAGCCTATATGGAGAAAGACGGAGACTTCATTGATCATGGAGTTTTCCAGATCGATGGACGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACTCTTATGCCAAGGCTCTCAATGCAGGCGATGCAACCCAGGCCCTCAATATATTCAGAGAGGAACAACCCAGAGACTTTTTTGCAAATTATCATAATCTCAAAGCAAATGCAGAAAGGATTTTTGCTAAGGCTCCGGAACCATGGATTCCTCCGTTTCCCCTCTCCTCATTCACTAACGTTCCAGAAGAGATGCAAGAGTGGGCAGATAATTATTTCGGGAGAGGTGCCGCTGCGCGGCCGGAGAGACCGATTAGTATCATCATCGAGGGTGAATTCAAGAACAGGAAAGACAATGTGGGCTCGTGCGTTAGGCCCACATACCTATCTGAGTGGACATCTGGATTTCAATGGTACGGTCTATTCAAATCAAGTGGAGTATACCGTCATTGCTGCCGTCGCACCGCACTATCTAAAGCTAAAGCACTGGAAAGAATTGATTGGGTCACAAAAAGACTGGCAGTCAAATTGCAAGTACGGCAAGCCAGTTCAAATTCAAGGAGGAATCCCATCAATCGTGCTTTGCAATCCAGGGTCAGGGTTCCAGCTATCAAGATTTCCTCAACAAAGAGGAAAACGCATCACTCAGGAACTGGACCCTCAAGAATGCGCTCTTCATCACCCTCAGCTCCCCCCTCAATAA
Protein Sequence MSQFSESSNWGDKPILPKCHHPSVSKSLPKTISLLILIALSPKTMHFPNSSTFKPQLTNYSFVLQESFTRMGSLISMCLSNSKGNTNAPTTDSSTWYPQPDQHISIRTFRELKKQAQTSKPIWRKTETSLIMEFSRSMDDQLEEVANLPTTLMPRLSMQAMQPRPSIYSERNNPETFLQIIIISKQMQKGFLLRLRNHGFLRFPSPHSLTFQKRCKSGQIIISGEVPLRGRRDRLVSSSRVNSRTGKTMWARALGPHTYLSGHLDFNGTVYSNQVEYTVIAAVAPHYLKLKHWKELIGSQKDWQSNCKYGKPVQIQGGIPSIVLCNPGSGFQLSRFPQQRGKRITQELDPQECALHHPQLPPQ