Chilli leaf curl Vellanad virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002821845.1
Isolate India: Vellanad
Release date 2018/8/25
Submitter Singh,A.K., Chattopadhyay,B., Chakraborty,S., Vinothkumar,R.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038442
ACCGGATGGCCGCGCCCATTTCTGTCATTGTCATGGGACCCACGTGTGTCGGCTTTGGCTTTTGTCTTTTGCATGGGCCCCACCACTAACTAATGTTAACCAATCACAGCCCCCCGTCAAAGCTTAATTATTGAAGTGGGCCCCTATATAAACTTGGGGACGAAGTTTCAATTTTATTCAAGATGTGGGACCCCCTAGTCAATGATTTTCCTGAAACTGTACATGGTTTCAGGTGTATGCTTGCAATAAAATACTTGCAATTAGTAGAAAATACATACTCACCAGATACCTTGGGGTACGATTTAATTAGGGATTTAATCTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGTCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCTGATGTTCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCCAGGCATGACGTGACCCACGTAGGGAAGGTTATGTGTATTAGTGATGTTACACGAGGTAGTGGGCTTACCCATAGAGTAGGTAAACGTTTTTGTGTCAAGTCAGTGTATGTGTTAGGTAAAATTTGGATGGATGAAAATATTAAAACGAAGAACCACACTAACAGTGTGATGTTCTTCCTTGTCCGTGATAGAAGACCTGTGGATAGACCCCAGGATTTTGGAGAGGTTTTCAACATGTTTGACAATGAACCCAGTACCGCAACCGTGAAGAATGTACATCGTGATCGATATCAAGTATTGAGGAAATGGCATGCAACTGTTACCGGAGGTCAGTACGCATCGAAGGAGCAGGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTAATTTATAACCAGCAGGAAGCTGGTAAGTATGAGAATCATCAGGAGAATGCGTTAATGTTGTATATGGCATGTACGCATGCCTCAAACCCCGTGTATGCTACTTTGAAGATACGGATCTACTTCTACGATTCAGTATCAAATTAATAAACGTTATATTTTATTTCACTGAATTGTTGTACACTTACAGTACCCGTTAGTACATTCCACAATACATGATCAACTCCCCTAATTACATTATTAACACTAACAACTCCTAAACTATCTAAATATCGTAGAAGTTGGGTTTTAAAGACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAAATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACACTCTCCGAAGGTTGTGGTTGAACTGCACCCGTAATGATATGAGGTCTGTGGTCGAGTTGAATGGCCGGCTGTCGTGGTTGAGGATCGTGAAATATAGGGGATTTGGGACCTGCCAGATATAGACGCCATTCGTTGCCAGAGCTGCAGTGATGCGTTCCCCTGTGCGTGAATCCATGATTCCTGCAGTCGATACCCAGGTAGTATGAACAACCACACTCAAGGTCCACCCGTTTCCTCCGGTTGGTCTTCTTGTATTGTCTGTGGAGAACCTTTATTGGTACCTGAGTAGAGTGGGCCTTGGAGGGTGACGAAGACTGCATTCTTTAGTGCCCAATTCCTTAGTGCGGAATTTTTGTCTTCGTCCAAGAACTCTTTATAGCTGGAATTGGGCCCTGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTTATTTGAACTGGCTTTCCGTATTTTGTGTTGGACTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGGTAGTGGGGGTCGACGTCATCAATGACGTTATACCAGGCATCATTTGAATATATTTTTGGGCTTAAATCCAAATGGCCACATAAGTAATTATGTGGACCCAAAGACCTAGCCCACATTGTTTTGCCGGTCCGACTATCACCCTCTAACACAATACTCATGGGTCTATTCGGCCGCGCAGCGGCACTGACAACATTCACGGCAGCCCATTCGTCAAGTTCATCACGAACTTGATCAAAGGAAGAACTTAAAAAAGGACAAACAAAAACCTCTCTTGGAGGTGCAAAAATCCTATCTAAATTGGTTTTCAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTCTCCCTAATGATTGCCAGAGCGGCATCAGCGGAGCCTGAATTTAGGGCCTCTGCTGCAGCATCATTAGCTGTCTGCTGACCTCCTCTAGCAGATCGTCCATCGACCTGAAAACTACCCCAGTCGATGTAATCTCCGTCCTTCTCGATGTAGGACTTGACATCGGAGGAGGACTTAGCTCCCTGGAAGTTTGGATGGAATTGGGATGAGGTGTTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCGGAACTGGGCTTTACCCTTGAACTGGATGAGGGCGTGGATATGCAGAGACCCATCTTGATGTTTTTCTTGAGAAATCCGGATAAATAATTTATCTGATGGGCATGAAATGCCCTTAAGTAGTTCTAACATTTGTTCCTTAGGTATGGGGCATTTTGGGTATGTTAAGAAAATATTTTTGGCTAAAACTTGAAATCTGTTTGCACGTGGCATTTTGTATTGGATGCTCTACAAACTCTGTGGGAATTGGATGCTTTGGATGCCTATATATATGAAGCTTCCAAATGGCATAAACGTAATTTACGGGAAATTTCCAATCTATTTCCCGCCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009506390.1
Location 183-530
Gene Name AV2
Protein Name precoat protein
Coding Region ATGTGGGACCCCCTAGTCAATGATTTTCCTGAAACTGTACATGGTTTCAGGTGTATGCTTGCAATAAAATACTTGCAATTAGTAGAAAATACATACTCACCAGATACCTTGGGGTACGATTTAATTAGGGATTTAATCTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGTCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLVNDFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIFQSCCCPHCPRHKSKGMGQQAHESEAQDVQDVQKP

NCBI Accession YP_009506391.1
Location 343-1113
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATTCCAGTCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAAGCAAGGGCATGGGCCAACAGGCCCATGAATCGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCTGATGTTCCCAAAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCCAGGCATGACGTGACCCACGTAGGGAAGGTTATGTGTATTAGTGATGTTACACGAGGTAGTGGGCTTACCCATAGAGTAGGTAAACGTTTTTGTGTCAAGTCAGTGTATGTGTTAGGTAAAATTTGGATGGATGAAAATATTAAAACGAAGAACCACACTAACAGTGTGATGTTCTTCCTTGTCCGTGATAGAAGACCTGTGGATAGACCCCAGGATTTTGGAGAGGTTTTCAACATGTTTGACAATGAACCCAGTACCGCAACCGTGAAGAATGTACATCGTGATCGATATCAAGTATTGAGGAAATGGCATGCAACTGTTACCGGAGGTCAGTACGCATCGAAGGAGCAGGCATTAGTTAGGAAGTTTGTTAGGGTTAATAATTATGTAATTTATAACCAGCAGGAAGCTGGTAAGTATGAGAATCATCAGGAGAATGCGTTAATGTTGTATATGGCATGTACGCATGCCTCAAACCCCGTGTATGCTACTTTGAAGATACGGATCTACTTCTACGATTCAGTATCAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYSSRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPKGCEGPCKVQSFESRHDVTHVGKVMCISDVTRGSGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDRPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVRKFVRVNNYVIYNQQEAGKYENHQENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009506392.1
Location 1110-1514
Gene Name AC3
Protein Name REn
Coding Region ATGGATTCACGCACAGGGGAACGCATCACTGCAGCTCTGGCAACGAATGGCGTCTATATCTGGCAGGTCCCAAATCCCCTATATTTCACGATCCTCAACCACGACAGCCGGCCATTCAACTCGACCACAGACCTCATATCATTACGGGTGCAGTTCAACCACAACCTTCGGAGAGTGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATTTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAAAACCCAACTTCTACGATATTTAGATAGTTTAGGAGTTGTTAGTGTTAATAATGTAATTAGGGGAGTTGATCATGTATTGTGGAATGTACTAACGGGTACTGTAAGTGTACAACAATTCAGTGAAATAAAATATAACGTTTATTAA
Protein Sequence MDSRTGERITAALATNGVYIWQVPNPLYFTILNHDSRPFNSTTDLISLRVQFNHNLRRVLGIHKCFLTFRIWTTLQPRTGHFLRVFKTQLLRYLDSLGVVSVNNVIRGVDHVLWNVLTGTVSVQQFSEIKYNVY

NCBI Accession YP_009506393.1
Location 1255-1659
Gene Name AC2
Protein Name TrAP
Coding Region ATGCAGTCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCAATAAAGGTTCTCCACAGACAATACAAGAAGACCAACCGGAGGAAACGGGTGGACCTTGAGTGTGGTTGTTCATACTACCTGGGTATCGACTGCAGGAATCATGGATTCACGCACAGGGGAACGCATCACTGCAGCTCTGGCAACGAATGGCGTCTATATCTGGCAGGTCCCAAATCCCCTATATTTCACGATCCTCAACCACGACAGCCGGCCATTCAACTCGACCACAGACCTCATATCATTACGGGTGCAGTTCAACCACAACCTTCGGAGAGTGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATTTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTCTTTAA
Protein Sequence MQSSSPSKAHSTQVPIKVLHRQYKKTNRRKRVDLECGCSYYLGIDCRNHGFTHRGTHHCSSGNEWRLYLAGPKSPIFHDPQPRQPAIQLDHRPHIITGAVQPQPSESVGDTQMFSNLPNLDDLTASDWSFLKGL

NCBI Accession YP_009506394.1
Location 1556-2647
Gene Name AC1
Protein Name Rep
Coding Region ATGCCACGTGCAAACAGATTTCAAGTTTTAGCCAAAAATATTTTCTTAACATACCCAAAATGCCCCATACCTAAGGAACAAATGTTAGAACTACTTAAGGGCATTTCATGCCCATCAGATAAATTATTTATCCGGATTTCTCAAGAAAAACATCAAGATGGGTCTCTGCATATCCACGCCCTCATCCAGTTCAAGGGTAAAGCCCAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAACACCTCATCCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCTCCTCCGATGTCAAGTCCTACATCGAGAAGGACGGAGATTACATCGACTGGGGTAGTTTTCAGGTCGATGGACGATCTGCTAGAGGAGGTCAGCAGACAGCTAATGATGCTGCAGCAGAGGCCCTAAATTCAGGCTCCGCTGATGCCGCTCTGGCAATCATTAGGGAGAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTGAAAACCAATTTAGATAGGATTTTTGCACCTCCAAGAGAGGTTTTTGTTTGTCCTTTTTTAAGTTCTTCCTTTGATCAAGTTCGTGATGAACTTGACGAATGGGCTGCCGTGAATGTTGTCAGTGCCGCTGCGCGGCCGAATAGACCCATGAGTATTGTGTTAGAGGGTGATAGTCGGACCGGCAAAACAATGTGGGCTAGGTCTTTGGGTCCACATAATTACTTATGTGGCCATTTGGATTTAAGCCCAAAAATATATTCAAATGATGCCTGGTATAACGTCATTGATGACGTCGACCCCCACTACCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAGTCCAACACAAAATACGGAAAGCCAGTTCAAATAAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCAGGGCCCAATTCCAGCTATAAAGAGTTCTTGGACGAAGACAAAAATTCCGCACTAAGGAATTGGGCACTAAAGAATGCAGTCTTCGTCACCCTCCAAGGCCCACTCTACTCAGGTACCAATAAAGGTTCTCCACAGACAATACAAGAAGACCAACCGGAGGAAACGGGTGGACCTTGA
Protein Sequence MPRANRFQVLAKNIFLTYPKCPIPKEQMLELLKGISCPSDKLFIRISQEKHQDGSLHIHALIQFKGKAQFRNPRHFDVTHPNTSSQFHPNFQGAKSSSDVKSYIEKDGDYIDWGSFQVDGRSARGGQQTANDAAAEALNSGSADAALAIIREKLPKDFIFQYHNLKTNLDRIFAPPREVFVCPFLSSSFDQVRDELDEWAAVNVVSAAARPNRPMSIVLEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEDKNSALRNWALKNAVFVTLQGPLYSGTNKGSPQTIQEDQPEETGGP

NCBI Accession YP_009506395.1
Location 2233-2490
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCTGCATATCCACGCCCTCATCCAGTTCAAGGGTAAAGCCCAGTTCCGAAACCCCAGACATTTCGATGTCACTCACCCTAACACCTCATCCCAATTCCATCCAAACTTCCAGGGAGCTAAGTCCTCCTCCGATGTCAAGTCCTACATCGAGAAGGACGGAGATTACATCGACTGGGGTAGTTTTCAGGTCGATGGACGATCTGCTAGAGGAGGTCAGCAGACAGCTAATGATGCTGCAGCAGAGGCCCTAA
Protein Sequence MGLCISTPSSSSRVKPSSETPDISMSLTLTPHPNSIQTSRELSPPPMSSPTSRRTEITSTGVVFRSMDDLLEEVSRQLMMLQQRP