Chilli leaf curl Kanpur virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002821825.1
Isolate India: Kanpur
Release date 2018/8/25
Submitter Singh,A.K., Chattopadhyay,B., Chakraborty,S., Khan,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038441
ACCGGATGGCCGCGATTTTTTTCGTGTGGGCCCCACAACACACGTGCTGACAATGACATGTGGACCAATTAAAAATGTCCCTCATAGCTTAATTATTCAATTTTCCCCTATTTAAACTTGGTCCCCAAGTATTGCACACATACCAATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGACACTCTCGGTTACGATTTAATCAGGGATTTGATCTCGGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGGGGATGTGAAGGCCCGTGTAAGGTCCAGTCCTTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTAATGTGTGTTAGTGATGTTACGCGTGGTACTGGTCTGACCCACAGAGTTGGTAAAAGGTTCTGTGTTAAGTCTGTTTATGTTCTGGGCAAGATTTGGATGGATGAGAATATAAAGACTAAGAATCATACGAATAGTGTTATGTTTTTTCTGGTTAGGGATCGTAGGCCCGTTGATAAGCCTCAAGATTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCTAGTACGGCTACCGTGAAGAATGTGCACCGTGATAGGTACCAGGTGTTGAGGAAGTGGCATGCAACCGTTACAGGTGGTCAATACGCATCAAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATAGTGAGAATGCGTTAATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACTTTAAAGATACGGATTTATTTTTATGACTCTGTAACCAACTGAAATTAATAAAGATTGAATTTTATTATGTTTGAACTCTGTACATGAATTGTTTGCGCTATTACATTCCATAATACATGATCGATAGCTCTAATTACATTGTTTATACTAATTACAGCAAAATTATTTAAAAACTGCAATACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCTGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACCGTACTTGGACTGTTATGATGTCGTGGTTCCTCATGAATGGCCGGTGGTGGTGGTCGATTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGGAATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAGTATGAACAGCCGCAGTCTAGGTCAACGCGACGACGCCTGGTCCCCTTCTTGGCTAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCCTCGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATTTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCGCCTTTAATTTGAACTGGCTTGCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAATTCCTTAAAGTGCTTTAGGTAGTGCGGGTCGACGTCATCAATGACGTTGTACCAGGCGTCATTATTATAGACCTTTGGGCTAAGGTCGAGATGTCCACACAAATAGTTGTGTGGACCTAGTGACCTGGCCCACATTGTCTTGCCCGTTCTACTGTCGCCCTCTATTACTATACTCATGGGTCGTAATGGCCGCGCAGCGGCACTGACGACGTTCTCAGCAGCCCACTCTTCAAGTTCTTGTGGAACTTGATCAAAAGAAGAAGAACAAAAAGGAGAAACATAGACCTCCACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTTGGGAGTTTTTCCCTTATTATTGCTAACGCCGCTTCAGCAGAACCCGCATTTAAGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCTAGCAGATCGTCCATCGATCTGAAACCGACCCCAGTCGATGTAATCACTGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGGGTGGCGTTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAATTTGGATTTACCTTTGAATTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGCCACTCTGATAAATAATTTATCAGATGGGCAATTTATTGACTGAAGAAGTTCGAGCATTTGCTCTTTCGGAATTGGGCATTTGGGATAAGTAAGGAAGATATTTTTAGCATTAACACAAAACGACTGCGTTCGAGGCATATTGAATTGGGGACACTCAAAACTCTATGGAATGGGGGACACCGGGGACGCATTTATATGGTGTCCCCAAATGGCAAATTTGTAATTTGCCCAACTTTAATTCAAATTCCCGTGAATAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009506384.1
Location 146-502
Gene Name AV2
Protein Name precoat protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGTTAGCAGTTAAATATCTGCAGCTAGTAGAAAAGACGTATTCTCCAGACACTCTCGGTTACGATTTAATCAGGGATTTGATCTCGGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSQLRQPIYQPCCCPHCPRHQSKSMGQQAHEQEAQDVQDVQKPRCS

NCBI Accession YP_009506385.1
Location 306-1076
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATACCAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAAAGCATGGGCCAACAGGCCCATGAACAGGAAGCCCAGGATGTACAGGATGTACAGAAGCCCAGATGTTCCTAGGGGATGTGAAGGCCCGTGTAAGGTCCAGTCCTTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTAATGTGTGTTAGTGATGTTACGCGTGGTACTGGTCTGACCCACAGAGTTGGTAAAAGGTTCTGTGTTAAGTCTGTTTATGTTCTGGGCAAGATTTGGATGGATGAGAATATAAAGACTAAGAATCATACGAATAGTGTTATGTTTTTTCTGGTTAGGGATCGTAGGCCCGTTGATAAGCCTCAAGATTTTGGTGAGGTGTTTAACATGTTTGATAATGAGCCTAGTACGGCTACCGTGAAGAATGTGCACCGTGATAGGTACCAGGTGTTGAGGAAGTGGCATGCAACCGTTACAGGTGGTCAATACGCATCAAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAACAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATAGTGAGAATGCGTTAATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACTTTAAAGATACGGATTTATTTTTATGACTCTGTAACCAACTGA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYTSRAAAPIVRVTKAKAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_009506386.1
Location 1079-1483
Gene Name AC3
Protein Name REn
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATTCCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAATCGACCACCACCACCGGCCATTCATGAGGAACCACGACATCATAACAGTCCAAGTACGGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTATTGCAGTTTTTAAATAATTTTGCTGTAATTAGTATAAACAATGTAATTAGAGCTATCGATCATGTATTATGGAATGTAATAGCGCAAACAATTCATGTACAGAGTTCAAACATAATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGEPITAAQAENSVFIWEITNPLYFKIIDHHHRPFMRNHDIITVQVRFNHNLRKALGIHKCFLTFRIWTTLQPQTGHFLRVFRTQVLQFLNNFAVISINNVIRAIDHVLWNVIAQTIHVQSSNIIKFNLY

NCBI Accession YP_009506387.1
Location 1224-1628
Gene Name AC2
Protein Name TrAP
Coding Region ATGCGACCTTCATCACCCTCGAGGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGACCTAGACTGCGGCTGTTCATACTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATTCCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAATCGACCACCACCACCGGCCATTCATGAGGAACCACGACATCATAACAGTCCAAGTACGGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCAGACTGGTCATTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSRAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSSREFRVYLGDNKSPVFQDNRPPPPAIHEEPRHHNSPSTVQSQPEESVGDTQMFSNLPNLDDLTASDWSFLKGI

NCBI Accession YP_009506388.1
Location 1531-2616
Gene Name AC1
Protein Name Rep
Coding Region ATGCCTCGAACGCAGTCGTTTTGTGTTAATGCTAAAAATATCTTCCTTACTTATCCCAAATGCCCAATTCCGAAAGAGCAAATGCTCGAACTTCTTCAGTCAATAAATTGCCCATCTGATAAATTATTTATCAGAGTGGCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCAAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCGGTTTCAGATCGATGGACGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAAATGCGGGTTCTGCTGAAGCGGCGTTAGCAATAATAAGGGAAAAACTCCCAAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCTGTGGAGGTCTATGTTTCTCCTTTTTGTTCTTCTTCTTTTGATCAAGTTCCACAAGAACTTGAAGAGTGGGCTGCTGAGAACGTCGTCAGTGCCGCTGCGCGGCCATTACGACCCATGAGTATAGTAATAGAGGGCGACAGTAGAACGGGCAAGACAATGTGGGCCAGGTCACTAGGTCCACACAACTATTTGTGTGGACATCTCGACCTTAGCCCAAAGGTCTATAATAATGACGCCTGGTACAACGTCATTGATGACGTCGACCCGCACTACCTAAAGCACTTTAAGGAATTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGCAAGCCAGTTCAAATTAAAGGCGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAAAATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCGAGGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTAGCCAAGAAGGGGACCAGGCGTCGTCGCGTTGA
Protein Sequence MPRTQSFCVNAKNIFLTYPKCPIPKEQMLELLQSINCPSDKLFIRVAQEKHQDGSLHIHALIQFKGKSKFRNPRHFDVTHPNNATQFHPNFQGAKSSSDVKSYIEKDSDYIDWGRFQIDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFCSSSFDQVPQELEEWAAENVVSAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKNWALKNATFITLEGPLYSGSNQSAAQASQEGDQASSR

NCBI Accession YP_009506389.1
Location 2202-2459
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCAAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATAACGCCACCCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACAGTGATTACATCGACTGGGGTCGGTTTCAGATCGATGGACGATCTGCTAGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCTTAA
Protein Sequence MGLCISMPSSNSKVNPNSETPDISMSLTLITPPNSTQTSRELSPALMSSPTSRRTVITSTGVGFRSMDDLLEEVNRQLMMLQQRP