Tomato pseudo-curly top virus
Basic Information
Genus |
Topocuvirus
|
NCBI Assembly |
GCF_000848785.1 |
Release date |
2015/2/12 |
Submitter |
Briddon,R.W., Bedford,I.D., Tsai,J.H., Markham,P.G. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGAGTGCCCTCCCTGGCCCTTTAAAATGTGGGTCCCACATGAGGGTATTGTTGTCTATTCACTCTATCAATTCCCGCTCAATTATTGGGCCTCTGTTCACTAAGGCCTTATAAGGCCCTTAATGAATTGGGCCCCAAGTTTGTCTTTATCTGCAGCTTTATATAAAGCTGCAGTTGCTTTCTTAAAGTAATGGCCACCACAAATTGTCGGATTTGTGGGTCCTCTTTTGCCTGCCCCATTAACGAACGCTTCAGCGTTTGTGAATCTCGAGGAGCTACTCTGAGTGATTTTTTGCTGTATTTTCGTAGAAAATACATAGAAACTTCCCCGGGTTTGATTTCCTATCTCAATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGACCGTATAAAAACATATACGTATGCATTCTCTAGTATTTGTACTGATAAAGGTACAATTGTATATATGAACAGCTGGTCTTTGGGTTTGGGTCCTCAACAGCGTAGCAGTGACATCGAGATTTTGAAGTCGATGTATATTCGCCTTACTGTTGCTCTGTCTGAAAATGCTGCTTCTCAAGTGAAGACCTATGTGGTTAAATGGGCTCTAATTGTGGATCAGGTTCCTGGTGAAACCCTAGTTGGTGTGGCGGATGTGTACAAGACTTGTCCCTCTCCTTATCCTTATGTGCAGTGTGCCTATATTGCTGATGATAATCACAGTCGTTTCCAAGTGCTGAGGAGTGGGTTTCTTAGTCTTAGTGGTAATGGTCTTGCAGTTGGATCTTCTACTAGAACTGGATGTCCGGCGATGAAGAATATGGCCTCTATTAACAAATTTTGTAAAAATTTAAATGTTAGATGCGTTTATGACGCAGATAGTGCTACTGGCGATATCGCCAGTATTAAGCGCGGTGCCGTTTATCTTGTAATCTGGCCTGACGTTGAAATCCGTTATGGATTTTCATGTACTATGTATCATAGAAATGGAAATGCGTAATAGAGTGTTTAATACAATCTCATCTTTATATTATAATAAAAACTTGGAGCATAAAATACACGCTGATCAAATAAATCAATGAAGTGATTTATCGATCTAATTACATTATTTATACTAATAACACCTAAATTATTCAAATGTTTCATTACATGAAATTTAAATCTATCTAATAATGCTTCTCCACTCAGACGAGGTGATACTGAAAGTACCACCAAGTTCAGCCAACAAATCTGGAGACCCAACACTTTCCGCAGGTTGTGGTTGGCTCTGATTTGTAATGTTATTATTTTGTTCCCCGTCGCCATTGTTGTTGTGTTCTGGAGGCGGAAGTAAATTGGGTTCTTGATGTCGTCGAAGTAACAGCCAGTCTGGCACTGTGTGTACGTGAGTAATTCCCCTGTGCGTGAATCCATCCTCACAGTCTATGCCTCCGTAGTATGAGCAGCCGCAGGAGAGGTGAATGGCCTTTCGTCTCTTTTTCTTCGGTGCCCAAGTCAGTTTGGGGGGTCGTTTTTTGATAGTTGGAGTTGTTGTTGCAGCTTCTTCGTCGTCAAAGTATTCTGGGTATAAGCACCTTTCGCAGAAACCCTTCCTTATCTCCCTATTTCCTAATTCGTGCGCGCCTTTGTCACACAGTACCATCGTATAAGGGTTCAGTCAGTTTTATGAATACAGCATTATAGAGTGTCCAATCTTTTAAAGCCTCATTCTCTTCCTTATCGAGGAAGTCTTGGAAAGAGGTGTCCCCACCAGGGTTGCAAAGGACTATTGATGGGATGCCACCTTTAATTTGAACTGGCTTTCCATATTTACAGTTTGACTGCCAGTCTCTCTGGGCCCCAATCAGCTCTTTCCAGTGCTTTAACTTTAAATAGTGCGGTGTGACGTCATCAATGACGTTATACAAGGCACTATTTGAATACACTCTGCTGTTAAAATCTAAGTGGCCGGATAAATAATTATGTGGGCCCAAGCTCCTAGCCCACATTGTCTTGCCGGTCCTAGACTCACCCTCAATTATAATACTTTTATATCTCATAGGCCGCGCAGCGGCACTAACTCCAAAATAATCATCCGCCCATTCTTGCATATCTTCAGGAACGTTAGTAAATGAAGATAATTGAAACGGAGGGACAAACGGAGTTGGTGCCGGAGTAAAAATCCTATCTAAGTTAGAAACTAAATTATGATAACAAAATAAAAAATCTTTAGGCAATTTTTCTTTTATAATTTGTAGAGCTTCCTCTTTTGAGGAACGGTTTAGGGCCTCTGCACATTCGTCGTTAGCTGTCTGCTGGCCTCCTCTAGCAGATCTAGCGTCAATCTGGAATTCTCCCCATTCGATAGTGTCTCCGTCCTTGTCGACGTAGGAGTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCGTTGATTTTTGCAGTTGAATTTCCCTTCGAATTGTATAAGCACATGGAGATGAGGTTCCCCATTTTCGTGTAGCTCTCTAGCTACTTTTATGTATTTTTTATTTGTTGGTGTTTGTAGCCTTTGAAGTTGGTCGAGAGCTTCTTCTTTGGATAAAGAACAATTGGGATATGTGAGGAAATAGTTCTTGGCTGCTATTTGAAAACGTTTGGGATTGGATGGCATATTTGTAAATATGTGTTGGTTACCAATTGGTTTGCTTTTTAATTCTCTAAATGAATCGGTAACTGGTACCCAATTTATAGGGGAGGGCACCGTATTAATATT
Gene Information
NCBI Accession
|
NP_620731.1
|
Location
|
193-483 |
Gene Name
|
ORF V2 |
Protein Name
|
hypothetical protein |
Coding Region
|
ATGGCCACCACAAATTGTCGGATTTGTGGGTCCTCTTTTGCCTGCCCCATTAACGAACGCTTCAGCGTTTGTGAATCTCGAGGAGCTACTCTGAGTGATTTTTTGCTGTATTTTCGTAGAAAATACATAGAAACTTCCCCGGGTTTGATTTCCTATCTCAATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGA |
Protein Sequence
|
MATTNCRICGSSFACPINERFSVCESRGATLSDFLLYFRRKYIETSPGLISYLNALQAEINELFSAIKEVSRSEIRHGSCEDKCQPSSIQKGKAEA |
NCBI Accession
|
NP_620732.1
|
Location
|
353-1081 |
Gene Name
|
orf1 |
Protein Name
|
coat protein |
Coding Region
|
ATGCCTTACAAGCGGAAATTAACGAGTTATTTTCCGCAATCAAAGAGGTTTCGCGGAGCGAAATCCGGCATGGCAGTTGTGAAGACAAGTGCCAGCCGTCGTCTATACAAAAAGGGAAAGCGGAAGCCTGACCGTATAAAAACATATACGTATGCATTCTCTAGTATTTGTACTGATAAAGGTACAATTGTATATATGAACAGCTGGTCTTTGGGTTTGGGTCCTCAACAGCGTAGCAGTGACATCGAGATTTTGAAGTCGATGTATATTCGCCTTACTGTTGCTCTGTCTGAAAATGCTGCTTCTCAAGTGAAGACCTATGTGGTTAAATGGGCTCTAATTGTGGATCAGGTTCCTGGTGAAACCCTAGTTGGTGTGGCGGATGTGTACAAGACTTGTCCCTCTCCTTATCCTTATGTGCAGTGTGCCTATATTGCTGATGATAATCACAGTCGTTTCCAAGTGCTGAGGAGTGGGTTTCTTAGTCTTAGTGGTAATGGTCTTGCAGTTGGATCTTCTACTAGAACTGGATGTCCGGCGATGAAGAATATGGCCTCTATTAACAAATTTTGTAAAAATTTAAATGTTAGATGCGTTTATGACGCAGATAGTGCTACTGGCGATATCGCCAGTATTAAGCGCGGTGCCGTTTATCTTGTAATCTGGCCTGACGTTGAAATCCGTTATGGATTTTCATGTACTATGTATCATAGAAATGGAAATGCGTAA |
Protein Sequence
|
MPYKRKLTSYFPQSKRFRGAKSGMAVVKTSASRRLYKKGKRKPDRIKTYTYAFSSICTDKGTIVYMNSWSLGLGPQQRSSDIEILKSMYIRLTVALSENAASQVKTYVVKWALIVDQVPGETLVGVADVYKTCPSPYPYVQCAYIADDNHSRFQVLRSGFLSLSGNGLAVGSSTRTGCPAMKNMASINKFCKNLNVRCVYDADSATGDIASIKRGAVYLVIWPDVEIRYGFSCTMYHRNGNA |
NCBI Accession
|
NP_620733.1
|
Location
|
1090-1494 |
Gene Name
|
ORF C3 |
Protein Name
|
replication-enhancer protein |
Coding Region
|
ATGGATTCACGCACAGGGGAATTACTCACGTACACACAGTGCCAGACTGGCTGTTACTTCGACGACATCAAGAACCCAATTTACTTCCGCCTCCAGAACACAACAACAATGGCGACGGGGAACAAAATAATAACATTACAAATCAGAGCCAACCACAACCTGCGGAAAGTGTTGGGTCTCCAGATTTGTTGGCTGAACTTGGTGGTACTTTCAGTATCACCTCGTCTGAGTGGAGAAGCATTATTAGATAGATTTAAATTTCATGTAATGAAACATTTGAATAATTTAGGTGTTATTAGTATAAATAATGTAATTAGATCGATAAATCACTTCATTGATTTATTTGATCAGCGTGTATTTTATGCTCCAAGTTTTTATTATAATATAAAGATGAGATTGTATTAA |
Protein Sequence
|
MDSRTGELLTYTQCQTGCYFDDIKNPIYFRLQNTTTMATGNKIITLQIRANHNLRKVLGLQICWLNLVVLSVSPRLSGEALLDRFKFHVMKHLNNLGVISINNVIRSINHFIDLFDQRVFYAPSFYYNIKMRLY |
NCBI Accession
|
NP_620734.1
|
Location
|
1244-1723 |
Gene Name
|
ORF C2 |
Protein Name
|
putative transcription activation protein |
Coding Region
|
ATGGTACTGTGTGACAAAGGCGCGCACGAATTAGGAAATAGGGAGATAAGGAAGGGTTTCTGCGAAAGGTGCTTATACCCAGAATACTTTGACGACGAAGAAGCTGCAACAACAACTCCAACTATCAAAAAACGACCCCCCAAACTGACTTGGGCACCGAAGAAAAAGAGACGAAAGGCCATTCACCTCTCCTGCGGCTGCTCATACTACGGAGGCATAGACTGTGAGGATGGATTCACGCACAGGGGAATTACTCACGTACACACAGTGCCAGACTGGCTGTTACTTCGACGACATCAAGAACCCAATTTACTTCCGCCTCCAGAACACAACAACAATGGCGACGGGGAACAAAATAATAACATTACAAATCAGAGCCAACCACAACCTGCGGAAAGTGTTGGGTCTCCAGATTTGTTGGCTGAACTTGGTGGTACTTTCAGTATCACCTCGTCTGAGTGGAGAAGCATTATTAGATAG |
Protein Sequence
|
MVLCDKGAHELGNREIRKGFCERCLYPEYFDDEEAATTTPTIKKRPPKLTWAPKKKRRKAIHLSCGCSYYGGIDCEDGFTHRGITHVHTVPDWLLLRRHQEPNLLPPPEHNNNGDGEQNNNITNQSQPQPAESVGSPDLLAELGGTFSITSSEWRSIIR |
NCBI Accession
|
NP_620735.1
|
Location
|
1710-2759 |
Gene Name
|
ORF C1 |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGCCATCCAATCCCAAACGTTTTCAAATAGCAGCCAAGAACTATTTCCTCACATATCCCAATTGTTCTTTATCCAAAGAAGAAGCTCTCGACCAACTTCAAAGGCTACAAACACCAACAAATAAAAAATACATAAAAGTAGCTAGAGAGCTACACGAAAATGGGGAACCTCATCTCCATGTGCTTATACAATTCGAAGGGAAATTCAACTGCAAAAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAACTCCTACGTCGACAAGGACGGAGACACTATCGAATGGGGAGAATTCCAGATTGACGCTAGATCTGCTAGAGGAGGCCAGCAGACAGCTAACGACGAATGTGCAGAGGCCCTAAACCGTTCCTCAAAAGAGGAAGCTCTACAAATTATAAAAGAAAAATTGCCTAAAGATTTTTTATTTTGTTATCATAATTTAGTTTCTAACTTAGATAGGATTTTTACTCCGGCACCAACTCCGTTTGTCCCTCCGTTTCAATTATCTTCATTTACTAACGTTCCTGAAGATATGCAAGAATGGGCGGATGATTATTTTGGAGTTAGTGCCGCTGCGCGGCCTATGAGATATAAAAGTATTATAATTGAGGGTGAGTCTAGGACCGGCAAGACAATGTGGGCTAGGAGCTTGGGCCCACATAATTATTTATCCGGCCACTTAGATTTTAACAGCAGAGTGTATTCAAATAGTGCCTTGTATAACGTCATTGATGACGTCACACCGCACTATTTAAAGTTAAAGCACTGGAAAGAGCTGATTGGGGCCCAGAGAGACTGGCAGTCAAACTGTAAATATGGAAAGCCAGTTCAAATTAAAGGTGGCATCCCATCAATAGTCCTTTGCAACCCTGGTGGGGACACCTCTTTCCAAGACTTCCTCGATAAGGAAGAGAATGAGGCTTTAAAAGATTGGACACTCTATAATGCTGTATTCATAAAACTGACTGAACCCTTATACGATGGTACTGTGTGA |
Protein Sequence
|
MPSNPKRFQIAAKNYFLTYPNCSLSKEEALDQLQRLQTPTNKKYIKVARELHENGEPHLHVLIQFEGKFNCKNQRFFDLVSPTRSTHFHPNIQGAKSSSDVNSYVDKDGDTIEWGEFQIDARSARGGQQTANDECAEALNRSSKEEALQIIKEKLPKDFLFCYHNLVSNLDRIFTPAPTPFVPPFQLSSFTNVPEDMQEWADDYFGVSAAARPMRYKSIIIEGESRTGKTMWARSLGPHNYLSGHLDFNSRVYSNSALYNVIDDVTPHYLKLKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGGDTSFQDFLDKEENEALKDWTLYNAVFIKLTEPLYDGTV |
NCBI Accession
|
NP_620736.1
|
Location
|
2342-2599 |
Gene Name
|
ORF C4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGGAACCTCATCTCCATGTGCTTATACAATTCGAAGGGAAATTCAACTGCAAAAATCAACGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAACTCCTACGTCGACAAGGACGGAGACACTATCGAATGGGGAGAATTCCAGATTGACGCTAGATCTGCTAGAGGAGGCCAGCAGACAGCTAACGACGAATGTGCAGAGGCCCTAA |
Protein Sequence
|
MGNLISMCLYNSKGNSTAKINDSSTWYPQPGQHISIRTYRELNPAPTSTPTSTRTETLSNGENSRLTLDLLEEASRQLTTNVQRP |