Tomato apical leaf curl virus
Basic Information
Genus |
Topilevirus
|
NCBI Assembly |
GCF_002890115.1 |
Isolate |
Argentina |
Release date |
2018/1/18 |
Submitter |
Vaghi Medina,G., Teppa,E., Bornancini,V.A., Flores,C.R., Marino Buslje,C., Lopez Lambertini,P.M. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACGGCTTTGCCCCTCACTCTCTGTCCCATATTATCTGCCACGTGGTTGGTCAGCCTTAACTTACGGAAAAGTTGTCGGGTAAAGTAAAAAGTAGCCGCATCTTTTGACTTATTTCAAAAGTGTATGGCCCCTATGTTTTGGCGGGAAACCTTTCCGTAACCTCTATTACTTGCTTCGCAAGTAATCTTATTATAAAAGTATAAAGAAATGAATAAAAAATTCAATGGACTGGACCTTTAACGCCTGGGTCTATCTATTTGTTTTTATAAGTACAGTTATAATTACTGTATTTAATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAAAAAAATAGAAATCTATAATCTCTTTTGGATCAAAAGAGATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAGGCGTCTTTCTTATTACCCTAGGTATATACCTAGGGGTCCTAAAAAAAATACCCGTGATAAGGTGTATACCTTTACAAGTTATAAGGCCTTTAGCGATTTAGGTGGTGTATGGTTGTTAAATGGTTTTGCCCAAGGTTTGGGTAATAACCAAAGAAATGGAAGCGTTGAAATTATTCGCGCTTTAAATTTGCGTTTAGGTGTTGCTATAGCAGAAGGTGCCACAGCATTAAATTTTGCTAGGGACTGGAACTGTACATGGTATGTAATTGCAGACCAGAGTCCTGGCACAACTATTCCAGCATTTACAGACATTTTTACCACAGGTTCTGCTGCTGTTGATGGTCTGGAATATATTCCAGATGATATGCATCTTCGTTTTCAGATTAAGATGAAGGGTAAATTGAAGTTCATTACTTCTGGAGTTAGTTATTCTACAGCAGTTACTTCCAAAACTGGCTACAATAAGTGCCATGATATTGTTAGAAAATTTAAATCAAAGTTGAATGTAAGAACTGATTATGATAGTAACAGTTCTGGAGGTGCTATTACAGATATAAAAAAGGGTGCTTTGTATTTAGTTATTAATCCTGAATTCAGCTGTTATGCTGGTGTAAATTGCACTATTTATCATAGTGGTCCTTATTATAAATAAAATATTTTACTTTGTTCTTACGTATATCAATCGTCACCCTCACTTTCCCCCCCAAGAAAGTGTTCATACGGTTGAGTCCTGAGCCCTCACCTTCCCCCCCAAATAAGCACGCGTTCTTTGATTTGGTAGGGCTTTAGCCCTACCAAATCAAAAGAACAAGATGGATGAAAAAATTAGTGGTTTATCTTGGTAGCAATTCCCTAAAGGGTTCAGCAATAGCAGAGTTACATTCATACGGAACAGGGTATAGTATGATATTAAAATTCTAAAAAAGCGATCCATCAATGAACTCATAAAGGACATTAGACTGACACCAAACATACAAATCAGAACGACTAATAGCCTCCTTATAAGAGCTATCAGGATTACATAATACTATTGAAGGAATGCCTCCTTTTATTGTACATTTTTTCCTATACTTTTCATTAACCGTGAAATCTTTTTGTGCTCCAAGTATTTCCTTTTTGCACGGCAAGTATTGAAATGGTATGTCGTCGAAAACATTATATATAGCGTGGGGATTGTACTCAGTCCAGTTCACTCCTCCGCAGAAATAATTGTGTAGTCCGAAGCTTCTTGCCCATGCTGTTTTACCTGTTCTTGTTGGGCCTTCAACAATGAGTGTTAATGGCCTATCGGGCTTATTCTCCGGGTCCTGAATCATTATAAATGTGTGGTCTAATGTTAGTAAAGTTATCTGGGTTTTCAAGAATCTGTTCTATAGATTCTTGTGCCATACTATCGTAAAAATCTAAATCATTTTGTGTTAATTGTGGAACGTCTAACAAAATGAAATCTCTATGTACCACGCATATGTTCTGTTCTACCCAATTTTTAATGGGCTCGGGTACGCCATTGAATATTGAGAATTTGGGTGTAAAATTCGCACTTGGTTTTGGCCACTTTTTGTTGGCCATGTATTCGAGGTTTCGCAGTTGTGTTGCGTATGTATAAGGTTGTTCTCGTTGACATCTGCTGAGGAAGTCCTCGGCGTTAGTGGATTCCTCGATGATCTTTCCCCATATAGTATCCCGAGATTTCTTAGGACTGCGTCTTGAAGCTCTAAGTAATCCTCGTTCCTCATATACTCCTCCCTTAGCGATGTAGTCTGCAACGTCAGCGTCCCTTCTTGGAATCTGGGCGTTTGGATGGTATGTGCTCTCTCTATTAGGGTCTGAAATGTCGAAGAATCTTGGGTTTCTTGTACTGAACTTCTCCTCCAATTGGACGAGGCAGTGGAGATGCAGCTCCCCATCTTGATGAGTTTCTTGACAGACCCTTGCATATGTAATTTTAAAATCATTTAATAGCTGAAATAAATAGTCTATGACGAATAATGGAATAAGAGGGCATTTTGGGTATGTAAGGAAAATTGATTTTCCCTGTAGGCGGAAGGTGTTTGGTGTTCTTGGCATTTTTCTCTCTATTATATTCTATTACTATGGCTTTGCGGAGTCAGAGCCAATTTATAGTCGAAGGTGTTAAATGGGCTTTGTGGCTCTATTCATGTGAGCCGTTGATTGTTGTAGTACGTGGCAGAAATCCGTGAAGGGGCAAAGCCATATAATATT
Gene Information
NCBI Accession
|
YP_009448197.1
|
Location
|
224-523 |
Gene Name
|
V3 |
Protein Name
|
putative ssDNA-dsDNA regulatory protein |
Coding Region
|
ATGGACTGGACCTTTAACGCCTGGGTCTATCTATTTGTTTTTATAAGTACAGTTATAATTACTGTATTTAATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAA |
Protein Sequence
|
MDWTFNAWVYLFVFISTVIITVFNGVTSIQLLRISEKLQRISADLRGSISHLAITIGVAEGRVFQPSQGGRVLRVGRTVSVPNRVQEDRPTGGETQVSP |
NCBI Accession
|
YP_009448198.1
|
Location
|
294-650 |
Gene Name
|
V2 |
Protein Name
|
putative movement protein |
Coding Region
|
ATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAAAAAAATAGAAATCTATAATCTCTTTTGGATCAAAAGAGATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAG |
Protein Sequence
|
MELPVYSSSEYPKSYNAFLQTCADRLVTWQLQLVWQKVEYFNRHKADEFFEWEELYQFLIEFRKTVRRAGRRKSHHKKIEIYNLFWIKRDGSKSGVNKLGCEEKAKYSKPFELDSESS |
NCBI Accession
|
YP_009448199.1
|
Location
|
562-1302 |
Gene Name
|
V1 |
Protein Name
|
putative coat protein |
Coding Region
|
ATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAGGCGTCTTTCTTATTACCCTAGGTATATACCTAGGGGTCCTAAAAAAAATACCCGTGATAAGGTGTATACCTTTACAAGTTATAAGGCCTTTAGCGATTTAGGTGGTGTATGGTTGTTAAATGGTTTTGCCCAAGGTTTGGGTAATAACCAAAGAAATGGAAGCGTTGAAATTATTCGCGCTTTAAATTTGCGTTTAGGTGTTGCTATAGCAGAAGGTGCCACAGCATTAAATTTTGCTAGGGACTGGAACTGTACATGGTATGTAATTGCAGACCAGAGTCCTGGCACAACTATTCCAGCATTTACAGACATTTTTACCACAGGTTCTGCTGCTGTTGATGGTCTGGAATATATTCCAGATGATATGCATCTTCGTTTTCAGATTAAGATGAAGGGTAAATTGAAGTTCATTACTTCTGGAGTTAGTTATTCTACAGCAGTTACTTCCAAAACTGGCTACAATAAGTGCCATGATATTGTTAGAAAATTTAAATCAAAGTTGAATGTAAGAACTGATTATGATAGTAACAGTTCTGGAGGTGCTATTACAGATATAAAAAAGGGTGCTTTGTATTTAGTTATTAATCCTGAATTCAGCTGTTATGCTGGTGTAAATTGCACTATTTATCATAGTGGTCCTTATTATAAATAA |
Protein Sequence
|
MGANQALISWGAKKKRSTPNRSSWTRRVRRRLSYYPRYIPRGPKKNTRDKVYTFTSYKAFSDLGGVWLLNGFAQGLGNNQRNGSVEIIRALNLRLGVAIAEGATALNFARDWNCTWYVIADQSPGTTIPAFTDIFTTGSAAVDGLEYIPDDMHLRFQIKMKGKLKFITSGVSYSTAVTSKTGYNKCHDIVRKFKSKLNVRTDYDSNSSGGAITDIKKGALYLVINPEFSCYAGVNCTIYHSGPYYK |
NCBI Accession
|
YP_009448200.1
|
Location
|
1568-1957,2109-2717 |
Gene Name
|
C1:C2 |
Protein Name
|
putative replication associated protein |
Coding Region
|
ATGCCAAGAACACCAAACACCTTCCGCCTACAGGGAAAATCAATTTTCCTTACATACCCAAAATGCCCTCTTATTCCATTATTCGTCATAGACTATTTATTTCAGCTATTAAATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAGAACAGAACATATGCGTGGACCCGGAGAATAAGCCCGATAGGCCATTAACACTCATTGTTGAAGGCCCAACAAGAACAGGTAAAACAGCATGGGCAAGAAGCTTCGGACTACACAATTATTTCTGCGGAGGAGTGAACTGGACTGAGTACAATCCCCACGCTATATATAATGTTTTCGACGACATACCATTTCAATACTTGCCGTGCAAAAAGGAAATACTTGGAGCACAAAAAGATTTCACGGTTAATGAAAAGTATAGGAAAAAATGTACAATAAAAGGAGGCATTCCTTCAATAGTATTATGTAATCCTGATAGCTCTTATAAGGAGGCTATTAGTCGTTCTGATTTGTATGTTTGGTGTCAGTCTAATGTCCTTTATGAGTTCATTGATGGATCGCTTTTTTAG |
Protein Sequence
|
MPRTPNTFRLQGKSIFLTYPKCPLIPLFVIDYLFQLLNDFKITYARVCQETHQDGELHLHCLVQLEEKFSTRNPRFFDISDPNRESTYHPNAQIPRRDADVADYIAKGGVYEERGLLRASRRSPKKSRDTIWGKIIEESTNAEDFLSRCQREQPYTYATQLRNLEYMANKKWPKPSANFTPKFSIFNGVPEPIKNWVEQNICVDPENKPDRPLTLIVEGPTRTGKTAWARSFGLHNYFCGGVNWTEYNPHAIYNVFDDIPFQYLPCKKEILGAQKDFTVNEKYRKKCTIKGGIPSIVLCNPDSSYKEAISRSDLYVWCQSNVLYEFIDGSLF |
NCBI Accession
|
YP_009448201.1
|
Location
|
1944-2717 |
Gene Name
|
C1 |
Protein Name
|
RepA |
Coding Region
|
ATGCCAAGAACACCAAACACCTTCCGCCTACAGGGAAAATCAATTTTCCTTACATACCCAAAATGCCCTCTTATTCCATTATTCGTCATAGACTATTTATTTCAGCTATTAAATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAGAACAGAACATATGCGTGGTACATAGAGATTTCATTTTGTTAGACGTTCCACAATTAACACAAAATGATTTAGATTTTTACGATAGTATGGCACAAGAATCTATAGAACAGATTCTTGAAAACCCAGATAACTTTACTAACATTAGACCACACATTTATAATGATTCAGGACCCGGAGAATAA |
Protein Sequence
|
MPRTPNTFRLQGKSIFLTYPKCPLIPLFVIDYLFQLLNDFKITYARVCQETHQDGELHLHCLVQLEEKFSTRNPRFFDISDPNRESTYHPNAQIPRRDADVADYIAKGGVYEERGLLRASRRSPKKSRDTIWGKIIEESTNAEDFLSRCQREQPYTYATQLRNLEYMANKKWPKPSANFTPKFSIFNGVPEPIKNWVEQNICVVHRDFILLDVPQLTQNDLDFYDSMAQESIEQILENPDNFTNIRPHIYNDSGPGE |
NCBI Accession
|
YP_009448202.1
|
Location
|
2126-2605 |
Gene Name
|
C3 |
Protein Name
|
C3 |
Coding Region
|
ATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAG |
Protein Sequence
|
MILKLHMQGSVKKLIKMGSCISTASSNWRRSSVQETQDSSTFQTLIERAHTIQTPRFQEGTLTLQTTSLREEYMRNEDYLELQDAVLRNLGILYGERSSRNPLTPRTSSADVNENNLIHTQHNCETSNTWPTKSGQNQVRILHPNSQYSMAYPSPLKIG |