Tomato apical leaf curl virus


Basic Information

Genus Topilevirus
NCBI Assembly GCF_002890115.1
Isolate Argentina
Release date 2018/1/18
Submitter Vaghi Medina,G., Teppa,E., Bornancini,V.A., Flores,C.R., Marino Buslje,C., Lopez Lambertini,P.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_036591
ACGGCTTTGCCCCTCACTCTCTGTCCCATATTATCTGCCACGTGGTTGGTCAGCCTTAACTTACGGAAAAGTTGTCGGGTAAAGTAAAAAGTAGCCGCATCTTTTGACTTATTTCAAAAGTGTATGGCCCCTATGTTTTGGCGGGAAACCTTTCCGTAACCTCTATTACTTGCTTCGCAAGTAATCTTATTATAAAAGTATAAAGAAATGAATAAAAAATTCAATGGACTGGACCTTTAACGCCTGGGTCTATCTATTTGTTTTTATAAGTACAGTTATAATTACTGTATTTAATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAAAAAAATAGAAATCTATAATCTCTTTTGGATCAAAAGAGATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAGGCGTCTTTCTTATTACCCTAGGTATATACCTAGGGGTCCTAAAAAAAATACCCGTGATAAGGTGTATACCTTTACAAGTTATAAGGCCTTTAGCGATTTAGGTGGTGTATGGTTGTTAAATGGTTTTGCCCAAGGTTTGGGTAATAACCAAAGAAATGGAAGCGTTGAAATTATTCGCGCTTTAAATTTGCGTTTAGGTGTTGCTATAGCAGAAGGTGCCACAGCATTAAATTTTGCTAGGGACTGGAACTGTACATGGTATGTAATTGCAGACCAGAGTCCTGGCACAACTATTCCAGCATTTACAGACATTTTTACCACAGGTTCTGCTGCTGTTGATGGTCTGGAATATATTCCAGATGATATGCATCTTCGTTTTCAGATTAAGATGAAGGGTAAATTGAAGTTCATTACTTCTGGAGTTAGTTATTCTACAGCAGTTACTTCCAAAACTGGCTACAATAAGTGCCATGATATTGTTAGAAAATTTAAATCAAAGTTGAATGTAAGAACTGATTATGATAGTAACAGTTCTGGAGGTGCTATTACAGATATAAAAAAGGGTGCTTTGTATTTAGTTATTAATCCTGAATTCAGCTGTTATGCTGGTGTAAATTGCACTATTTATCATAGTGGTCCTTATTATAAATAAAATATTTTACTTTGTTCTTACGTATATCAATCGTCACCCTCACTTTCCCCCCCAAGAAAGTGTTCATACGGTTGAGTCCTGAGCCCTCACCTTCCCCCCCAAATAAGCACGCGTTCTTTGATTTGGTAGGGCTTTAGCCCTACCAAATCAAAAGAACAAGATGGATGAAAAAATTAGTGGTTTATCTTGGTAGCAATTCCCTAAAGGGTTCAGCAATAGCAGAGTTACATTCATACGGAACAGGGTATAGTATGATATTAAAATTCTAAAAAAGCGATCCATCAATGAACTCATAAAGGACATTAGACTGACACCAAACATACAAATCAGAACGACTAATAGCCTCCTTATAAGAGCTATCAGGATTACATAATACTATTGAAGGAATGCCTCCTTTTATTGTACATTTTTTCCTATACTTTTCATTAACCGTGAAATCTTTTTGTGCTCCAAGTATTTCCTTTTTGCACGGCAAGTATTGAAATGGTATGTCGTCGAAAACATTATATATAGCGTGGGGATTGTACTCAGTCCAGTTCACTCCTCCGCAGAAATAATTGTGTAGTCCGAAGCTTCTTGCCCATGCTGTTTTACCTGTTCTTGTTGGGCCTTCAACAATGAGTGTTAATGGCCTATCGGGCTTATTCTCCGGGTCCTGAATCATTATAAATGTGTGGTCTAATGTTAGTAAAGTTATCTGGGTTTTCAAGAATCTGTTCTATAGATTCTTGTGCCATACTATCGTAAAAATCTAAATCATTTTGTGTTAATTGTGGAACGTCTAACAAAATGAAATCTCTATGTACCACGCATATGTTCTGTTCTACCCAATTTTTAATGGGCTCGGGTACGCCATTGAATATTGAGAATTTGGGTGTAAAATTCGCACTTGGTTTTGGCCACTTTTTGTTGGCCATGTATTCGAGGTTTCGCAGTTGTGTTGCGTATGTATAAGGTTGTTCTCGTTGACATCTGCTGAGGAAGTCCTCGGCGTTAGTGGATTCCTCGATGATCTTTCCCCATATAGTATCCCGAGATTTCTTAGGACTGCGTCTTGAAGCTCTAAGTAATCCTCGTTCCTCATATACTCCTCCCTTAGCGATGTAGTCTGCAACGTCAGCGTCCCTTCTTGGAATCTGGGCGTTTGGATGGTATGTGCTCTCTCTATTAGGGTCTGAAATGTCGAAGAATCTTGGGTTTCTTGTACTGAACTTCTCCTCCAATTGGACGAGGCAGTGGAGATGCAGCTCCCCATCTTGATGAGTTTCTTGACAGACCCTTGCATATGTAATTTTAAAATCATTTAATAGCTGAAATAAATAGTCTATGACGAATAATGGAATAAGAGGGCATTTTGGGTATGTAAGGAAAATTGATTTTCCCTGTAGGCGGAAGGTGTTTGGTGTTCTTGGCATTTTTCTCTCTATTATATTCTATTACTATGGCTTTGCGGAGTCAGAGCCAATTTATAGTCGAAGGTGTTAAATGGGCTTTGTGGCTCTATTCATGTGAGCCGTTGATTGTTGTAGTACGTGGCAGAAATCCGTGAAGGGGCAAAGCCATATAATATT

Gene Information

NCBI Accession YP_009448197.1
Location 224-523
Gene Name V3
Protein Name putative ssDNA-dsDNA regulatory protein
Coding Region ATGGACTGGACCTTTAACGCCTGGGTCTATCTATTTGTTTTTATAAGTACAGTTATAATTACTGTATTTAATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAA
Protein Sequence MDWTFNAWVYLFVFISTVIITVFNGVTSIQLLRISEKLQRISADLRGSISHLAITIGVAEGRVFQPSQGGRVLRVGRTVSVPNRVQEDRPTGGETQVSP

NCBI Accession YP_009448198.1
Location 294-650
Gene Name V2
Protein Name putative movement protein
Coding Region ATGGAGTTACCAGTATACAGCTCCTCAGAATATCCGAAAAGTTACAACGCATTTCTGCAGACTTGCGCGGATCGATTAGTCACCTGGCAATTACAATTGGTGTGGCAGAAGGTCGAGTATTTCAACCGTCACAAGGCGGACGAGTTCTTCGAGTGGGAAGAACTGTATCAGTTCCTAATAGAGTTCAGGAAGACCGTCCGACGGGCGGGGAGACGCAAGTCTCACCATAAAAAAATAGAAATCTATAATCTCTTTTGGATCAAAAGAGATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAG
Protein Sequence MELPVYSSSEYPKSYNAFLQTCADRLVTWQLQLVWQKVEYFNRHKADEFFEWEELYQFLIEFRKTVRRAGRRKSHHKKIEIYNLFWIKRDGSKSGVNKLGCEEKAKYSKPFELDSESS

NCBI Accession YP_009448199.1
Location 562-1302
Gene Name V1
Protein Name putative coat protein
Coding Region ATGGGAGCAAATCAGGCGTTAATAAGTTGGGGTGCGAAGAAAAAGCGAAGTACTCCAAACCGTTCGAGTTGGACTCGGAGAGTTCGTAGGCGTCTTTCTTATTACCCTAGGTATATACCTAGGGGTCCTAAAAAAAATACCCGTGATAAGGTGTATACCTTTACAAGTTATAAGGCCTTTAGCGATTTAGGTGGTGTATGGTTGTTAAATGGTTTTGCCCAAGGTTTGGGTAATAACCAAAGAAATGGAAGCGTTGAAATTATTCGCGCTTTAAATTTGCGTTTAGGTGTTGCTATAGCAGAAGGTGCCACAGCATTAAATTTTGCTAGGGACTGGAACTGTACATGGTATGTAATTGCAGACCAGAGTCCTGGCACAACTATTCCAGCATTTACAGACATTTTTACCACAGGTTCTGCTGCTGTTGATGGTCTGGAATATATTCCAGATGATATGCATCTTCGTTTTCAGATTAAGATGAAGGGTAAATTGAAGTTCATTACTTCTGGAGTTAGTTATTCTACAGCAGTTACTTCCAAAACTGGCTACAATAAGTGCCATGATATTGTTAGAAAATTTAAATCAAAGTTGAATGTAAGAACTGATTATGATAGTAACAGTTCTGGAGGTGCTATTACAGATATAAAAAAGGGTGCTTTGTATTTAGTTATTAATCCTGAATTCAGCTGTTATGCTGGTGTAAATTGCACTATTTATCATAGTGGTCCTTATTATAAATAA
Protein Sequence MGANQALISWGAKKKRSTPNRSSWTRRVRRRLSYYPRYIPRGPKKNTRDKVYTFTSYKAFSDLGGVWLLNGFAQGLGNNQRNGSVEIIRALNLRLGVAIAEGATALNFARDWNCTWYVIADQSPGTTIPAFTDIFTTGSAAVDGLEYIPDDMHLRFQIKMKGKLKFITSGVSYSTAVTSKTGYNKCHDIVRKFKSKLNVRTDYDSNSSGGAITDIKKGALYLVINPEFSCYAGVNCTIYHSGPYYK

NCBI Accession YP_009448200.1
Location 1568-1957,2109-2717
Gene Name C1:C2
Protein Name putative replication associated protein
Coding Region ATGCCAAGAACACCAAACACCTTCCGCCTACAGGGAAAATCAATTTTCCTTACATACCCAAAATGCCCTCTTATTCCATTATTCGTCATAGACTATTTATTTCAGCTATTAAATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAGAACAGAACATATGCGTGGACCCGGAGAATAAGCCCGATAGGCCATTAACACTCATTGTTGAAGGCCCAACAAGAACAGGTAAAACAGCATGGGCAAGAAGCTTCGGACTACACAATTATTTCTGCGGAGGAGTGAACTGGACTGAGTACAATCCCCACGCTATATATAATGTTTTCGACGACATACCATTTCAATACTTGCCGTGCAAAAAGGAAATACTTGGAGCACAAAAAGATTTCACGGTTAATGAAAAGTATAGGAAAAAATGTACAATAAAAGGAGGCATTCCTTCAATAGTATTATGTAATCCTGATAGCTCTTATAAGGAGGCTATTAGTCGTTCTGATTTGTATGTTTGGTGTCAGTCTAATGTCCTTTATGAGTTCATTGATGGATCGCTTTTTTAG
Protein Sequence MPRTPNTFRLQGKSIFLTYPKCPLIPLFVIDYLFQLLNDFKITYARVCQETHQDGELHLHCLVQLEEKFSTRNPRFFDISDPNRESTYHPNAQIPRRDADVADYIAKGGVYEERGLLRASRRSPKKSRDTIWGKIIEESTNAEDFLSRCQREQPYTYATQLRNLEYMANKKWPKPSANFTPKFSIFNGVPEPIKNWVEQNICVDPENKPDRPLTLIVEGPTRTGKTAWARSFGLHNYFCGGVNWTEYNPHAIYNVFDDIPFQYLPCKKEILGAQKDFTVNEKYRKKCTIKGGIPSIVLCNPDSSYKEAISRSDLYVWCQSNVLYEFIDGSLF

NCBI Accession YP_009448201.1
Location 1944-2717
Gene Name C1
Protein Name RepA
Coding Region ATGCCAAGAACACCAAACACCTTCCGCCTACAGGGAAAATCAATTTTCCTTACATACCCAAAATGCCCTCTTATTCCATTATTCGTCATAGACTATTTATTTCAGCTATTAAATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAGAACAGAACATATGCGTGGTACATAGAGATTTCATTTTGTTAGACGTTCCACAATTAACACAAAATGATTTAGATTTTTACGATAGTATGGCACAAGAATCTATAGAACAGATTCTTGAAAACCCAGATAACTTTACTAACATTAGACCACACATTTATAATGATTCAGGACCCGGAGAATAA
Protein Sequence MPRTPNTFRLQGKSIFLTYPKCPLIPLFVIDYLFQLLNDFKITYARVCQETHQDGELHLHCLVQLEEKFSTRNPRFFDISDPNRESTYHPNAQIPRRDADVADYIAKGGVYEERGLLRASRRSPKKSRDTIWGKIIEESTNAEDFLSRCQREQPYTYATQLRNLEYMANKKWPKPSANFTPKFSIFNGVPEPIKNWVEQNICVVHRDFILLDVPQLTQNDLDFYDSMAQESIEQILENPDNFTNIRPHIYNDSGPGE

NCBI Accession YP_009448202.1
Location 2126-2605
Gene Name C3
Protein Name C3
Coding Region ATGATTTTAAAATTACATATGCAAGGGTCTGTCAAGAAACTCATCAAGATGGGGAGCTGCATCTCCACTGCCTCGTCCAATTGGAGGAGAAGTTCAGTACAAGAAACCCAAGATTCTTCGACATTTCAGACCCTAATAGAGAGAGCACATACCATCCAAACGCCCAGATTCCAAGAAGGGACGCTGACGTTGCAGACTACATCGCTAAGGGAGGAGTATATGAGGAACGAGGATTACTTAGAGCTTCAAGACGCAGTCCTAAGAAATCTCGGGATACTATATGGGGAAAGATCATCGAGGAATCCACTAACGCCGAGGACTTCCTCAGCAGATGTCAACGAGAACAACCTTATACATACGCAACACAACTGCGAAACCTCGAATACATGGCCAACAAAAAGTGGCCAAAACCAAGTGCGAATTTTACACCCAAATTCTCAATATTCAATGGCGTACCCGAGCCCATTAAAAATTGGGTAG
Protein Sequence MILKLHMQGSVKKLIKMGSCISTASSNWRRSSVQETQDSSTFQTLIERAHTIQTPRFQEGTLTLQTTSLREEYMRNEDYLELQDAVLRNLGILYGERSSRNPLTPRTSSADVNENNLIHTQHNCETSNTWPTKSGQNQVRILHPNSQYSMAYPSPLKIG