Wheat dwarf India virus
Basic Information
Genus |
Mastrevirus
|
NCBI Assembly |
GCF_000894555.1 |
Isolate |
India |
Release date |
2015/2/22 |
Submitter |
Kumar,J., Singh,S.P., Tuli,R. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCCGCGTCGCCCGTAGCATCGCGACGTGGAACGTGGGCCTCTACGTGACACGGAGCCGCATTAATTAAAGTAAAGATGCCCGGTCGCTGTCAGCTTTAATTGGTAGATGGTGCGTCATTTTCCCGGCCCGCGCTGCCTTTCCTTTATAAAGAGGTGACTCGGAGGTGACTTCGATGGGGTCTGCTCGTCTAGGTGAGTTCTCTCCGCTTGCTTACCCTGGAAGCATCGCATATATCCCCCAATCTCCTCCCGCAGTTCAGAACGAGGACCCGTGGATCCGCCTGGTCTTCGTTTTTGTAGCGGTAATTGCTGCAATCGGTTTGCTTTATCTGAGTTACCGCTGGTTCGTCAGGGATGTCATCATACTCCTTCGGGCGAAGAGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGCTCGGCCCGACGGTGGACAGCCTAGCACCAGACGAGGACCTGATCCCTCGGCTGCTGCACCTCCTTACTGAGGCCAGGCTTCTTGTTCAGGAGCTTGCCGACGGATCCCTAACCGATGTCTCAGGTGAAGAAGAGGACCCGTCGGGGGGACGAAGTGGAGTGGTCAAAGCGCAAGCGGTTGAGGTCGTCCGGGTCGAAAGGATCGGCGACCAAGCTTAGGAAGCTCCCGGTGAGGCCCAGTCTGCAGATTCAGTCGCTGTACTATACGCTCACCACCTATGTAGACTTCAAGACAGGTGGTGAAAGTTATCTGATGGCCTCTTACGCCCGTGGTTCCGACGAAGGTGAGAGGCATACTAACGAGACTATGACGTATAAGGCAGCCCTGAACCTACATCTGTCTGCCTCCTCGGATGCTTGTAAATATTCTAATACAGGCACAGGCTGCATCTGGTTGATTTACGATGCACAGCCCACGGGAAATAAACCGTCTCCGAAGGACATCTTCGGGTACTCGGACAGCCTCAACTCCTGGCCAACAACATGGATGGTTTCTCGGGAGCAGTGCCATCGTTTCGTCGTTAAGAGGCGATGGACGTTCACCCTGGAGACTAACGGGAGGCTCGCATCTGATGTTCCTCCTTCGAACGTCGTCTGGCCTCCGTGCAAGAAGAGCATTAACTTCCACAAGTTCGCCAAGGGTCTGGGTGTGCGTACTGAGTGGAAGAATAAAACAGACGGGGGGATTGGCTCGATCAAAAAAGGTGCCTTGTACTTTGTAATAGCTCCGGGTAACGGAGTAGAGGGACGGATGTTTGGTACGATCCGTATGTACTTCAAGAGTATCGGTAACCAGTAAAGGTTGCTCATATATGTAATAAACCATATTTTATTAATAAAATGGCCATGCTTACAAGAAAAAACACACATACAATACAGGGTGGACAGGACAAAGGCGGGCGGATAAGGGTGGCCGCAAGGGGCAAAACATTAAAAAAAAACACACTCTGTTAAACAATTTCGGCCCCGCCGAAGAACTTCTCCGTTGGTTCCATCATGTAAATGATGGAATTGGCTTCGAAGTACTCCTGTTGTTCCGGGGTCATTGTCTTCAGCCAATCCTCATCGCTGTTAACGAGGATGATTGAGGGGATGCCTCCTTTTATTAACTTCTTCTTACCGTACTTAGGGTTTACGGTGAAGTCCCTCTGGGCCGCTACCAACTGTTTCCAGCAAGGGCAGAATTTAAATGGAATGTCGTCGATTATGTTATATGCCGCTTCTGGATCGTAGACTGTAAAGTCTACATTATTCTGCCAGTAGTTGTGTCGGCCCAGGGACCTTGCCCATGTAGATTTTCCGGTCCTTGTTGGACCGACGATGTAGAGGCTCTTTGGCCTTGTTCCTGCAGATGGATCCTGGAATTTTCCTGCAACCATGTCAGTTCTTGTACAGCCTCTGCTACGCTGTTTATGGTTGGTGTGTTTAGCATATAACAATAAGGGTGTACCTGGAAAAGGTTAGAATCTATCCAGTCTTGGATAGTTTCGTAGCAGTAGAGGTCTGGTACAGATTGGCCGTGGGGATTGCTGTACTCTGGTTGTTGTTCAGGGAAGAGCTTCGAGGCACTATACTCGAAGTTGTATAGTTTAGTGGCCCAGTCATATGGGAAGTTTCTTCTGACTTTACTTAGGTAGTCAGACTTGTTGGTGGAGTTCTCTATGATATCTTTCATGATATCATCTCTGGATCGTTTATTGGAATGCCTAGGACTGGTTCCTGCATTTCTCCCTCTGGGGATAAATGCTCCCTTCTCGCTAAAAGTAATTGGACCCTTAAGGATGTAATCTCGGCATAATGTTGGGTTCTTTGCAGCTTGTATGTGAGGATGATGACCATCAAAATCAAAGAAATGAGGATCATTGGTAGAAATTTGCTTGCGAGTCTGTAGGAGAGCATGGAGATGAGGTGTACCATCCTGGTGTAGTTCGACAGAAGCAACAGCATAGATAGGACTCCAAGTAGAAATGAGGTCCCAGAAGTGTTGAACCATTCCATATGGGCAGGAATTACAGTGGGGAAATGTAAGAAAGCAGTTATTACTGCGGTACCTGAAGGTTGAAGACGAGGCTTTGGGGTTAGCCGAGTTGTTCTCAGCGGAAGTCTGAGACATAGCGTGTCTGATGCTAACACTCTCTGGGACTTAGCCGCGTTTCCGTCGGCTCGAGTTTTATCGATACTCTCTCGATGCGCGATCTTCCCAGCGCTGCGGCGGGGTTTTTATAATGGTTTCCGATCTGACACCTGGGACCAGGGGGGCCCAGGAGCGATGGCGAAGGGCGCGCGCGGCAATAATATT
Gene Information
NCBI Accession
|
YP_006273068.1
|
Location
|
175-495 |
Gene Name
|
V1 |
Protein Name
|
movement protein |
Coding Region
|
ATGGGGTCTGCTCGTCTAGGTGAGTTCTCTCCGCTTGCTTACCCTGGAAGCATCGCATATATCCCCCAATCTCCTCCCGCAGTTCAGAACGAGGACCCGTGGATCCGCCTGGTCTTCGTTTTTGTAGCGGTAATTGCTGCAATCGGTTTGCTTTATCTGAGTTACCGCTGGTTCGTCAGGGATGTCATCATACTCCTTCGGGCGAAGAGACAGCGGAGCACGGAAGAGATTGGTTTCGGCAATACTCCAGCTCGGCCCGACGGTGGACAGCCTAGCACCAGACGAGGACCTGATCCCTCGGCTGCTGCACCTCCTTACTGA |
Protein Sequence
|
MGSARLGEFSPLAYPGSIAYIPQSPPAVQNEDPWIRLVFVFVAVIAAIGLLYLSYRWFVRDVIILLRAKRQRSTEEIGFGNTPARPDGGQPSTRRGPDPSAAAPPY |
NCBI Accession
|
YP_006273069.1
|
Location
|
540-1283 |
Gene Name
|
V2 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCTCAGGTGAAGAAGAGGACCCGTCGGGGGGACGAAGTGGAGTGGTCAAAGCGCAAGCGGTTGAGGTCGTCCGGGTCGAAAGGATCGGCGACCAAGCTTAGGAAGCTCCCGGTGAGGCCCAGTCTGCAGATTCAGTCGCTGTACTATACGCTCACCACCTATGTAGACTTCAAGACAGGTGGTGAAAGTTATCTGATGGCCTCTTACGCCCGTGGTTCCGACGAAGGTGAGAGGCATACTAACGAGACTATGACGTATAAGGCAGCCCTGAACCTACATCTGTCTGCCTCCTCGGATGCTTGTAAATATTCTAATACAGGCACAGGCTGCATCTGGTTGATTTACGATGCACAGCCCACGGGAAATAAACCGTCTCCGAAGGACATCTTCGGGTACTCGGACAGCCTCAACTCCTGGCCAACAACATGGATGGTTTCTCGGGAGCAGTGCCATCGTTTCGTCGTTAAGAGGCGATGGACGTTCACCCTGGAGACTAACGGGAGGCTCGCATCTGATGTTCCTCCTTCGAACGTCGTCTGGCCTCCGTGCAAGAAGAGCATTAACTTCCACAAGTTCGCCAAGGGTCTGGGTGTGCGTACTGAGTGGAAGAATAAAACAGACGGGGGGATTGGCTCGATCAAAAAAGGTGCCTTGTACTTTGTAATAGCTCCGGGTAACGGAGTAGAGGGACGGATGTTTGGTACGATCCGTATGTACTTCAAGAGTATCGGTAACCAGTAA |
Protein Sequence
|
MSQVKKRTRRGDEVEWSKRKRLRSSGSKGSATKLRKLPVRPSLQIQSLYYTLTTYVDFKTGGESYLMASYARGSDEGERHTNETMTYKAALNLHLSASSDACKYSNTGTGCIWLIYDAQPTGNKPSPKDIFGYSDSLNSWPTTWMVSREQCHRFVVKRRWTFTLETNGRLASDVPPSNVVWPPCKKSINFHKFAKGLGVRTEWKNKTDGGIGSIKKGALYFVIAPGNGVEGRMFGTIRMYFKSIGNQ |
NCBI Accession
|
YP_006273070.1
|
Location
|
1435-1810,1900-2597 |
Gene Name
|
Rep |
Protein Name
|
replicase |
Coding Region
|
ATGTCTCAGACTTCCGCTGAGAACAACTCGGCTAACCCCAAAGCCTCGTCTTCAACCTTCAGGTACCGCAGTAATAACTGCTTTCTTACATTTCCCCACTGTAATTCCTGCCCATATGGAATGGTTCAACACTTCTGGGACCTCATTTCTACTTGGAGTCCTATCTATGCTGTTGCTTCTGTCGAACTACACCAGGATGGTACACCTCATCTCCATGCTCTCCTACAGACTCGCAAGCAAATTTCTACCAATGATCCTCATTTCTTTGATTTTGATGGTCATCATCCTCACATACAAGCTGCAAAGAACCCAACATTATGCCGAGATTACATCCTTAAGGGTCCAATTACTTTTAGCGAGAAGGGAGCATTTATCCCCAGAGGGAGAAATGCAGGAACCAGTCCTAGGCATTCCAATAAACGATCCAGAGATGATATCATGAAAGATATCATAGAGAACTCCACCAACAAGTCTGACTACCTAAGTAAAGTCAGAAGAAACTTCCCATATGACTGGGCCACTAAACTATACAACTTCGAGTATAGTGCCTCGAAGCTCTTCCCTGAACAACAACCAGAGTACAGCAATCCCCACGGCCAATCTGTACCAGACCTCTACTGCTACGAAACTATCCAAGACTGGATAGATTCTAACCTTTTCCAGGTACACCCTTATTGTTATATGCTAAACACACCAACCTACATCGTCGGTCCAACAAGGACCGGAAAATCTACATGGGCAAGGTCCCTGGGCCGACACAACTACTGGCAGAATAATGTAGACTTTACAGTCTACGATCCAGAAGCGGCATATAACATAATCGACGACATTCCATTTAAATTCTGCCCTTGCTGGAAACAGTTGGTAGCGGCCCAGAGGGACTTCACCGTAAACCCTAAGTACGGTAAGAAGAAGTTAATAAAAGGAGGCATCCCCTCAATCATCCTCGTTAACAGCGATGAGGATTGGCTGAAGACAATGACCCCGGAACAACAGGAGTACTTCGAAGCCAATTCCATCATTTACATGATGGAACCAACGGAGAAGTTCTTCGGCGGGGCCGAAATTGTTTAA |
Protein Sequence
|
MSQTSAENNSANPKASSSTFRYRSNNCFLTFPHCNSCPYGMVQHFWDLISTWSPIYAVASVELHQDGTPHLHALLQTRKQISTNDPHFFDFDGHHPHIQAAKNPTLCRDYILKGPITFSEKGAFIPRGRNAGTSPRHSNKRSRDDIMKDIIENSTNKSDYLSKVRRNFPYDWATKLYNFEYSASKLFPEQQPEYSNPHGQSVPDLYCYETIQDWIDSNLFQVHPYCYMLNTPTYIVGPTRTGKSTWARSLGRHNYWQNNVDFTVYDPEAAYNIIDDIPFKFCPCWKQLVAAQRDFTVNPKYGKKKLIKGGIPSIILVNSDEDWLKTMTPEQQEYFEANSIIYMMEPTEKFFGGAEIV |
NCBI Accession
|
YP_006273071.1
|
Location
|
1728-2597 |
Gene Name
|
RepA |
Protein Name
|
RepA |
Coding Region
|
ATGTCTCAGACTTCCGCTGAGAACAACTCGGCTAACCCCAAAGCCTCGTCTTCAACCTTCAGGTACCGCAGTAATAACTGCTTTCTTACATTTCCCCACTGTAATTCCTGCCCATATGGAATGGTTCAACACTTCTGGGACCTCATTTCTACTTGGAGTCCTATCTATGCTGTTGCTTCTGTCGAACTACACCAGGATGGTACACCTCATCTCCATGCTCTCCTACAGACTCGCAAGCAAATTTCTACCAATGATCCTCATTTCTTTGATTTTGATGGTCATCATCCTCACATACAAGCTGCAAAGAACCCAACATTATGCCGAGATTACATCCTTAAGGGTCCAATTACTTTTAGCGAGAAGGGAGCATTTATCCCCAGAGGGAGAAATGCAGGAACCAGTCCTAGGCATTCCAATAAACGATCCAGAGATGATATCATGAAAGATATCATAGAGAACTCCACCAACAAGTCTGACTACCTAAGTAAAGTCAGAAGAAACTTCCCATATGACTGGGCCACTAAACTATACAACTTCGAGTATAGTGCCTCGAAGCTCTTCCCTGAACAACAACCAGAGTACAGCAATCCCCACGGCCAATCTGTACCAGACCTCTACTGCTACGAAACTATCCAAGACTGGATAGATTCTAACCTTTTCCAGGTACACCCTTATTGTTATATGCTAAACACACCAACCATAAACAGCGTAGCAGAGGCTGTACAAGAACTGACATGGTTGCAGGAAAATTCCAGGATCCATCTGCAGGAACAAGGCCAAAGAGCCTCTACATCGTCGGTCCAACAAGGACCGGAAAATCTACATGGGCAAGGTCCCTGGGCCGACACAACTACTGGCAGAATAATGTAG |
Protein Sequence
|
MSQTSAENNSANPKASSSTFRYRSNNCFLTFPHCNSCPYGMVQHFWDLISTWSPIYAVASVELHQDGTPHLHALLQTRKQISTNDPHFFDFDGHHPHIQAAKNPTLCRDYILKGPITFSEKGAFIPRGRNAGTSPRHSNKRSRDDIMKDIIENSTNKSDYLSKVRRNFPYDWATKLYNFEYSASKLFPEQQPEYSNPHGQSVPDLYCYETIQDWIDSNLFQVHPYCYMLNTPTINSVAEAVQELTWLQENSRIHLQEQGQRASTSSVQQGPENLHGQGPWADTTTGRIM |