Chilli leaf curl India virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002986345.1
Isolate India:North India
Release date 2018/8/26
Submitter Kumar,Y., Walia,Y., Bhardwaj,P., Negi,A., Hallan,V., Zaidi,A.A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038875
ACCGGATGGCCGCGATTTTTTTTGTGGCCCCCACAACGCGCTAACTGACAATGACATGTGGACCAATGAGAATCGTCCCTCATGGTCTCATTGTTTTGTGGTCCCCCCTATAAATTAGTCCCCAAATATTGGTCTTTATCCACAATGTGGGACCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATACCTGCGGTTAGTAGAAAATACGTATTCCCCAGATACTCTGGGCTACGATTTAATTAGGGATTTGATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAAGATGTACAGGGTGTACAGAAGCCCAGATGTTCCGAGGGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTAATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACTCACCGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTTTATGTTTTGGGCAAGATCTGGATGGACGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGAGATCGTAGGCCTGTTGATAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTATCAGGTGCTGAGAAAGTGGCATGCAACTGTCACCGGTGGTCAATATGCATCCAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCGTTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAATAAAGATTAAATTTTATTGAATATGATTGTTCTACATATACAACATGATGTAATACATTCCATAATACATGATCAACTGCTCTAACTACATTGTTAATACTGATAACTCCTAAATTATCTAAATACTTAATAACTTGGGTCTTAAAGACCCTTAAGAAACGACCAGTCGGAGGCTGTGAGGTCATCCAGATTCGGAAGGCTATGAAACATTTGTGAATCCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGGACTTGGACGGTTATGATGTCTTTGTTCATCAGGAATGGCCTGTTGTGGTGCTCTGTTATCTTGAAATACAGGGGATTTGGAACCTCCCAGGTATACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCTCTGTGCGTGAATCCATATTTGTGGCAGTCGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAACCCTCTTACGCCGGATGGCTCTACGCTTAGCAGCTCTGTGTTGGACCTTGATTGGTACCTGAGTATAGTGGCTCTTCGAGGGTGATGAAGGTTGCATTATGTATTGCCCACGACCTCAGTGCTGAGTTCTTTTCCTCATCGAGGAATTCTTTATAGCTGGAATTGGGCCCAGGATTGCAGAGGAAGATAGTGGGAATGCCCCCTTTAATTTGAACTGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAATGACGTTGTACCAGGCATCATTTGAATATATCTTGGGACTCAGATCTAAATGGCCGCATAAATAATTGTGTGGTCCCAAAGACCTGGCCCACATTGTCTTGCCTGTACGACTATCACCCTCAATGACGATACTTTTAGGTCTCAATGGCCGCGCAGCGGGACCCATCACATTTTCAGAGGCCCATTCCTCTATGGCCTCTGGAACCTGATCGAACGAAGAAGAAAGAAATGGGGGAACATAAACCTCCACTGGAGGTGTAAAAATCCTATCTAAATTAGTTTTTAAATTATGATATTGAAAAATAAAATCTTTCGGGAGTTTCTCCCTAATAATTGCTAGAGCTGCTTCAGCTGAACCTGCATTTAGGGCCTCTGCTGCAGCATCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCGTCCATCGACCTGAAACTGACCCCAGTCGATGTAATCACCGTCCTTCTCGATATAGGACTTGACATCGGAGCTGGACTTTGCTCCCTGGAAGTTTGGGTGGAATTGGGTTGATGTATTAGGGTGAGTGACATCGAAATGTCTGGGGTTTCTGAATTGGGATTTACCTTTGAATTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCCTGTGACACTCTGATAAATAATTTATCAGAAGGACAAGAAACGTTTTTTAGGAGTTCGAGCATTTGCTCTTTGGGTATTGGGCATTTTGGATAAGTAAGGAAGATATTTTTGGCTTTAACTTGGAACTGATGAGCACGAGGCATAATGAATTGGGTGCTCTCTAAAACTCTGTGGAATGGGGATCTTTGGGTGCCTATTTATATCGAGCTCCCAAATGGCATTATCGTAATTTGGGGAAATAATTCAAAATCCCCACGCTCCAAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009508107.1
Location 145-510
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTGGGACCCTTTAGTAAACGAGTTTCCCGAAACCGTTCACGGTTTTAGGTGTATGCTAGCAGTTAAATACCTGCGGTTAGTAGAAAATACGTATTCCCCAGATACTCTGGGCTACGATTTAATTAGGGATTTGATTTCAGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAAGATGTACAGGGTGTACAGAAGCCCAGATGTTCCGAGGGGATGTGA
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLRLVENTYSPDTLGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSELRQPICEPCCCPHCPRHKGKSMGEQAHEPKAQDVQGVQKPRCSEGM

NCBI Accession YP_009508108.1
Location 305-1075
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGAGCATGGGCGAACAGGCCCATGAACCGAAAGCCCAAGATGTACAGGGTGTACAGAAGCCCAGATGTTCCGAGGGGATGTGAAGGCCCGTGTAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTAATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACTCACCGGGTTGGCAAGAGGTTCTGTGTGAAGTCCGTTTATGTTTTGGGCAAGATCTGGATGGACGAGAACATCAAGACTAAGAATCATACGAATAGTGTTATGTTTTTCCTTGTTAGAGATCGTAGGCCTGTTGATAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGGTATCAGGTGCTGAGAAAGTGGCATGCAACTGTCACCGGTGGTCAATATGCATCCAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCGTTGATGTTGTATATGGCGTGTACCCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTACTTCTATGATTCAGTATCGAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPKMYRVYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_009508109.1
Location 1072-1476
Gene Name AC3
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACAGAGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGGAGGTTCCAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGATGAACAAAGACATCATAACCGTCCAAGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAAGACCCAAGTTATTAAGTATTTAGATAATTTAGGAGTTATCAGTATTAACAATGTAGTTAGAGCAGTTGATCATGTATTATGGAATGTATTACATCATGTTGTATATGTAGAACAATCATATTCAATAAAATTTAATCTTTATTAA
Protein Sequence MDSRTEEPITAAQAENGVYTWEVPNPLYFKITEHHNRPFLMNKDIITVQVQFNHNLRKALGIHKCFIAFRIWMTSQPPTGRFLRVFKTQVIKYLDNLGVISINNVVRAVDHVLWNVLHHVVYVEQSYSIKFNLY

NCBI Accession YP_009508110.1
Location 1217-1624
Gene Name AC2
Protein Name transcriptional activator protein
Coding Region ATGCAACCTTCATCACCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTAAACTGTGGGTGCTCATACTACGTACACATCGACTGCCACAAATATGGATTCACGCACAGAGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATACCTGGGAGGTTCCAAATCCCCTGTATTTCAAGATAACAGAGCACCACAACAGGCCATTCCTGATGAACAAAGACATCATAACCGTCCAAGTCCAGTTCAACCACAACCTGAGGAAAGCGTTGGGGATTCACAAATGTTTCATAGCCTTCCGAATCTGGATGACCTCACAGCCTCCGACTGGTCGTTTCTTAAGGGTCTTTAA
Protein Sequence MQPSSPSKSHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHIDCHKYGFTHRGTHHCSSSREWRVYLGGSKSPVFQDNRAPQQAIPDEQRHHNRPSPVQPQPEESVGDSQMFHSLPNLDDLTASDWSFLKGL

NCBI Accession YP_009508111.1
Location 1554-2612
Gene Name AC1
Protein Name replication initiator protein
Coding Region ATGCCTCGTGCTCATCAGTTCCAAGTTAAAGCCAAAAATATCTTCCTTACTTATCCAAAATGCCCAATACCCAAAGAGCAAATGCTCGAACTCCTAAAAAACGTTTCTTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAGGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCCAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCAACCCAATTCCACCCAAACTTCCAGGGAGCAAAGTCCAGCTCCGATGTCAAGTCCTATATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGGTCGATGGACGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTAAATGCAGGTTCAGCTGAAGCAGCTCTAGCAATTATTAGGGAGAAACTCCCGAAAGATTTTATTTTTCAATATCATAATTTAAAAACTAATTTAGATAGGATTTTTACACCTCCAGTGGAGGTTTATGTTCCCCCATTTCTTTCTTCTTCGTTCGATCAGGTTCCAGAGGCCATAGAGGAATGGGCCTCTGAAAATGTGATGGGTCCCGCTGCGCGGCCATTGAGACCTAAAAGTATCGTCATTGAGGGTGATAGTCGTACAGGCAAGACAATGTGGGCCAGGTCTTTGGGACCACACAATTATTTATGCGGCCATTTAGATCTGAGTCCCAAGATATATTCAAATGATGCCTGGTACAACGTCATTGATGACGTAGATCCCCACTACCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAGCCAGTTCAAATTAAAGGGGGCATTCCCACTATCTTCCTCTGCAATCCTGGGCCCAATTCCAGCTATAAAGAATTCCTCGATGAGGAAAAGAACTCAGCACTGAGGTCGTGGGCAATACATAATGCAACCTTCATCACCCTCGAAGAGCCACTATACTCAGGTACCAATCAAGGTCCAACACAGAGCTGCTAA
Protein Sequence MPRAHQFQVKAKNIFLTYPKCPIPKEQMLELLKNVSCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPNTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGQFQVDGRSARGGQQTANDAAAEALNAGSAEAALAIIREKLPKDFIFQYHNLKTNLDRIFTPPVEVYVPPFLSSSFDQVPEAIEEWASENVMGPAARPLRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEFLDEEKNSALRSWAIHNATFITLEEPLYSGTNQGPTQSC

NCBI Accession YP_009508112.1
Location 2198-2455
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCTGCATATCCATGCCCTCATCCAATTCAAAGGTAAATCCCAATTCAGAAACCCCAGACATTTCGATGTCACTCACCCTAATACATCAACCCAATTCCACCCAAACTTCCAGGGAGCAAAGTCCAGCTCCGATGTCAAGTCCTATATCGAGAAGGACGGTGATTACATCGACTGGGGTCAGTTTCAGGTCGATGGACGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGCTGCAGCAGAGGCCCTAA
Protein Sequence MGLCISMPSSNSKVNPNSETPDISMSLTLIHQPNSTQTSREQSPAPMSSPISRRTVITSTGVSFRSMDDLLEEVNRQLMMLQQRP