Sugarcane white streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000919135.1
Isolate Sudan
Release date 2015/2/22
Submitter Candresse,T., Filloux,D., Muhire,B., Julian,C., Galzi,S., Fort,G., Bernardo,P., Daugrois,J.H., Fernandez,E., Martin,D.P., Varsani,A., Roumagnac,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_023989
TAATATTACCGCTTTCCCCCGCAAGGCCCGCGAGCCGGCCCGTGTGCGCTCTATGGGCCGGCGAGCTTTAGACCAAAGATCGTGACTGTCAACGTCGTGACGTGATTCGTTTGACTTTAGCCTTCCTTGGCCTGGAAGAAATATTCTTTATATAAAGCATCGTCGTGTCTTTCTGGTTAATGGCGCATCATATGAAGCTTTTACAGGTATCACCAACTGTTGTGTATACCCCATCTCCTCGTCCACCGTCGACAGACGGTGATTCGTGGTCCCATCTGATCTTCGCTCTCGTAGTGACTATTTGTGTAGTCCTCACAATTTACGTGGTTTATCGTTGGTTTGGCAGGGATTTAATAATCCTATTCCGTGCCAGAAGACAGAGATCCACGGAGGAGATCGGATTTGGTAATACGCCGGTAAATCCACGTGCTGGACCGGGTGTTCAGGTCGTGGGCGGAGCAATCCCAGGATAAGGGATTAACGTGGTCTGGAACCTACTCAGATTTTCGACGCGCTTTGGATATGGCTGGACCGATGCGTAGAAAACCTGCTAGGTCTTCACGCAGGATTGTACCGTGGCCTGCTGAGGCGCTGCGTCGGGGTTATACCCCGAGGAATTCAGTACTTCGGGGTACTCGTTCCGGCCGGTCTGATCGCAGACCATCTCTACAGGTGATAAACTACAGGTGGTCGGGTCAGTCAGCACCAATATTTAAAACCGGAGGGGCGACATATTTATCGTCGACCTTTGCCAGAGGCAATGGAGAAGACCAAAGACGGGGAGCGGAAACGATCATATACAAGATAGCGTTCAAGCTCGTGTTTGCTGTGACCTCGTCGCAGTTAAAATACGTATCACGTGGGATGTGCGTCCTTTGGTTGGTCTACGACGCACAGCCTACTGGGATTAAACCGGAACCGAAGGATATCTTCGACTACGATACGGGGTTATCGCAATCTCCTATGACTTGGTCTGTACAGAGAGCGCTGTGCAACAGATTCGTCGTCAAAAGACGATGGAAGTTCGAGCTATCGGTGAATGGTGTATCTGCGGCTGATGACTCTAGTGATGCACAGCTTAGCGGGAAGACAATTCCCTATTCCCGGAGGGGTTTTGACAAGTTCTGTAAGCGTCTTGCAACGCGTACAGAATGGAAAAACACCGAAGGGGGTGACATAGGCGACATACAGAAGGGGGCATTATATGTAATAGCGGCACCTGGTAACGCGATGGAATTTCAAGCCATCGGAAATATTAGGGTATATTTTAAATCCGTAGGATTGCAGTAGTTGTTAGGAAATAATTGTAATTTTCACGGCAGTGAAATATTAAAATAGTTGTACTATTTTATTCATTATGCCAGCAACGCTCACTTACAAATTACACACATATACAATATAGGGGGGTAGGACAAAGCAGGCGGCTATGGGCGCGATAGAGGGCAACACACTAAAAAAAAACTGGAACTAGGACGACCCTGTCCCGTCAGGGACATCCTCCTGTGCCTCAGGCACAGGAGTATCACCTCCGAAGAATTTTTCACCAGGCTTCATCACGTAGACATCACAGTTGTTCACAAAGTAGTCCATCTGGGATGGACTAAGAACCGGGAGCCAGTCATCGTCAGGGTTCTGAAGTATTATGCATGGGATTCCTCCCGGGATCTCTTTGCGTTTCGCGTACTTAGGGTTGACGATGAAGTCCCTCTGACAGCCGACGAGTTGTTTCCAATTTGGACAGAATTTGAAGGGTACATCATCGAGAATGTTGTATTTGGCGAGGGTATCATACGCTGTGAAGTCCACCATGTGTTGCCAGTAATTGTGTCGTCCGAGGCTCCTAGCCCACGTAGATTTACCAGTTCTTGTAGGTCCAACGATGTACAGGCTCCGTCGGCGTTGTGCGGCGTCAAATGCGTCGGTGATATCCTACAATGAATATAGTGATAAGTATATTGCGTAACGAAAATGAATAGAACCGGAATCAGAACTTACCATATCAAGTTCGTCATAGACCCACCTGTCAATGATTTCCCTGCAAAATAAGTCGGGTTCCGAAGGAGGAAATGGATTAACGTATTCACGGACCGGTTCTGGGAATAACTTGGATGCACTGTATTCAAACTGCTGCAAACGTGTGGCCCAATCAAATGGGAATGTATTCCTCACACGAGTAAGGTAGTCGTCCTTACTCGTTGAGGTATTGATGATGTCCCTCATCAGGGAGTCCTTGGTACCGGAATTCCCAGAGCGTGGTATTGCGGAAGTATTGGATCTTGACCCACGTGGTTGAAATGACCCCTCCTCGAAAGACGTGATAGGGTCCTTGAGAATGTATGCACGGACGTTGTCAGGGCTTTTAGCTGGTTGTATATTGGGATGGTGACCACAAATATCGAAGTAATGAGGATTTCGAGTGTACATGGTCTTATCAGTCTGAAGAAGGATATGCAGATGGTTTGAACCATCTGCATGATGCTCTTGAGAGCATAAGATGTAGAGAGGCTGAAACCTATGGCAAAGAGTAAGGAGAGTGCGTGCCGCGACATCTACAGATATGTCGCACCTTGGATATGTAAGAAAAATATTCTGGGCTTTGAATTGAAAGACTCTTGGCTGGGAAGTTGATCCTGCTCTAGGATCAGGCCAACTAGTGGTGAACTCCTCTAAGCCAGGACTTAGTCGCTGAGCGGCTATTCCCTGGTTGCTACTATCCGTACTCATTGCAAACTCTCTCGCTACTTGAAATCAGAATCCTCCACCCTACGTGGCGTTTTTATAGCCCCTATAGGGGCTATTGGGCTACTGGGCCTTGCGGGGGAAAGCGTAT

Gene Information

NCBI Accession YP_009026386.1
Location 180-473
Protein Name movement protein
Coding Region ATGGCGCATCATATGAAGCTTTTACAGGTATCACCAACTGTTGTGTATACCCCATCTCCTCGTCCACCGTCGACAGACGGTGATTCGTGGTCCCATCTGATCTTCGCTCTCGTAGTGACTATTTGTGTAGTCCTCACAATTTACGTGGTTTATCGTTGGTTTGGCAGGGATTTAATAATCCTATTCCGTGCCAGAAGACAGAGATCCACGGAGGAGATCGGATTTGGTAATACGCCGGTAAATCCACGTGCTGGACCGGGTGTTCAGGTCGTGGGCGGAGCAATCCCAGGATAA
Protein Sequence MAHHMKLLQVSPTVVYTPSPRPPSTDGDSWSHLIFALVVTICVVLTIYVVYRWFGRDLIILFRARRQRSTEEIGFGNTPVNPRAGPGVQVVGGAIPG

NCBI Accession YP_009026387.1
Location 523-1290
Protein Name capsid protein
Coding Region ATGGCTGGACCGATGCGTAGAAAACCTGCTAGGTCTTCACGCAGGATTGTACCGTGGCCTGCTGAGGCGCTGCGTCGGGGTTATACCCCGAGGAATTCAGTACTTCGGGGTACTCGTTCCGGCCGGTCTGATCGCAGACCATCTCTACAGGTGATAAACTACAGGTGGTCGGGTCAGTCAGCACCAATATTTAAAACCGGAGGGGCGACATATTTATCGTCGACCTTTGCCAGAGGCAATGGAGAAGACCAAAGACGGGGAGCGGAAACGATCATATACAAGATAGCGTTCAAGCTCGTGTTTGCTGTGACCTCGTCGCAGTTAAAATACGTATCACGTGGGATGTGCGTCCTTTGGTTGGTCTACGACGCACAGCCTACTGGGATTAAACCGGAACCGAAGGATATCTTCGACTACGATACGGGGTTATCGCAATCTCCTATGACTTGGTCTGTACAGAGAGCGCTGTGCAACAGATTCGTCGTCAAAAGACGATGGAAGTTCGAGCTATCGGTGAATGGTGTATCTGCGGCTGATGACTCTAGTGATGCACAGCTTAGCGGGAAGACAATTCCCTATTCCCGGAGGGGTTTTGACAAGTTCTGTAAGCGTCTTGCAACGCGTACAGAATGGAAAAACACCGAAGGGGGTGACATAGGCGACATACAGAAGGGGGCATTATATGTAATAGCGGCACCTGGTAACGCGATGGAATTTCAAGCCATCGGAAATATTAGGGTATATTTTAAATCCGTAGGATTGCAGTAG
Protein Sequence MAGPMRRKPARSSRRIVPWPAEALRRGYTPRNSVLRGTRSGRSDRRPSLQVINYRWSGQSAPIFKTGGATYLSSTFARGNGEDQRRGAETIIYKIAFKLVFAVTSSQLKYVSRGMCVLWLVYDAQPTGIKPEPKDIFDYDTGLSQSPMTWSVQRALCNRFVVKRRWKFELSVNGVSAADDSSDAQLSGKTIPYSRRGFDKFCKRLATRTEWKNTEGGDIGDIQKGALYVIAAPGNAMEFQAIGNIRVYFKSVGLQ

NCBI Accession YP_009026388.1
Location 1468-1929,1996-2724
Protein Name replication associated protein
Coding Region ATGAGTACGGATAGTAGCAACCAGGGAATAGCCGCTCAGCGACTAAGTCCTGGCTTAGAGGAGTTCACCACTAGTTGGCCTGATCCTAGAGCAGGATCAACTTCCCAGCCAAGAGTCTTTCAATTCAAAGCCCAGAATATTTTTCTTACATATCCAAGGTGCGACATATCTGTAGATGTCGCGGCACGCACTCTCCTTACTCTTTGCCATAGGTTTCAGCCTCTCTACATCTTATGCTCTCAAGAGCATCATGCAGATGGTTCAAACCATCTGCATATCCTTCTTCAGACTGATAAGACCATGTACACTCGAAATCCTCATTACTTCGATATTTGTGGTCACCATCCCAATATACAACCAGCTAAAAGCCCTGACAACGTCCGTGCATACATTCTCAAGGACCCTATCACGTCTTTCGAGGAGGGGTCATTTCAACCACGTGGGTCAAGATCCAATACTTCCGCAATACCACGCTCTGGGAATTCCGGTACCAAGGACTCCCTGATGAGGGACATCATCAATACCTCAACGAGTAAGGACGACTACCTTACTCGTGTGAGGAATACATTCCCATTTGATTGGGCCACACGTTTGCAGCAGTTTGAATACAGTGCATCCAAGTTATTCCCAGAACCGGTCCGTGAATACGTTAATCCATTTCCTCCTTCGGAACCCGACTTATTTTGCAGGGAAATCATTGACAGGTGGGTCTATGACGAACTTGATATGGATATCACCGACGCATTTGACGCCGCACAACGCCGACGGAGCCTGTACATCGTTGGACCTACAAGAACTGGTAAATCTACGTGGGCTAGGAGCCTCGGACGACACAATTACTGGCAACACATGGTGGACTTCACAGCGTATGATACCCTCGCCAAATACAACATTCTCGATGATGTACCCTTCAAATTCTGTCCAAATTGGAAACAACTCGTCGGCTGTCAGAGGGACTTCATCGTCAACCCTAAGTACGCGAAACGCAAAGAGATCCCGGGAGGAATCCCATGCATAATACTTCAGAACCCTGACGATGACTGGCTCCCGGTTCTTAGTCCATCCCAGATGGACTACTTTGTGAACAACTGTGATGTCTACGTGATGAAGCCTGGTGAAAAATTCTTCGGAGGTGATACTCCTGTGCCTGAGGCACAGGAGGATGTCCCTGACGGGACAGGGTCGTCCTAG
Protein Sequence MSTDSSNQGIAAQRLSPGLEEFTTSWPDPRAGSTSQPRVFQFKAQNIFLTYPRCDISVDVAARTLLTLCHRFQPLYILCSQEHHADGSNHLHILLQTDKTMYTRNPHYFDICGHHPNIQPAKSPDNVRAYILKDPITSFEEGSFQPRGSRSNTSAIPRSGNSGTKDSLMRDIINTSTSKDDYLTRVRNTFPFDWATRLQQFEYSASKLFPEPVREYVNPFPPSEPDLFCREIIDRWVYDELDMDITDAFDAAQRRRSLYIVGPTRTGKSTWARSLGRHNYWQHMVDFTAYDTLAKYNILDDVPFKFCPNWKQLVGCQRDFIVNPKYAKRKEIPGGIPCIILQNPDDDWLPVLSPSQMDYFVNNCDVYVMKPGEKFFGGDTPVPEAQEDVPDGTGSS

NCBI Accession YP_009026389.1
Location 1930-2724
Protein Name RepA
Coding Region ATGAGTACGGATAGTAGCAACCAGGGAATAGCCGCTCAGCGACTAAGTCCTGGCTTAGAGGAGTTCACCACTAGTTGGCCTGATCCTAGAGCAGGATCAACTTCCCAGCCAAGAGTCTTTCAATTCAAAGCCCAGAATATTTTTCTTACATATCCAAGGTGCGACATATCTGTAGATGTCGCGGCACGCACTCTCCTTACTCTTTGCCATAGGTTTCAGCCTCTCTACATCTTATGCTCTCAAGAGCATCATGCAGATGGTTCAAACCATCTGCATATCCTTCTTCAGACTGATAAGACCATGTACACTCGAAATCCTCATTACTTCGATATTTGTGGTCACCATCCCAATATACAACCAGCTAAAAGCCCTGACAACGTCCGTGCATACATTCTCAAGGACCCTATCACGTCTTTCGAGGAGGGGTCATTTCAACCACGTGGGTCAAGATCCAATACTTCCGCAATACCACGCTCTGGGAATTCCGGTACCAAGGACTCCCTGATGAGGGACATCATCAATACCTCAACGAGTAAGGACGACTACCTTACTCGTGTGAGGAATACATTCCCATTTGATTGGGCCACACGTTTGCAGCAGTTTGAATACAGTGCATCCAAGTTATTCCCAGAACCGGTCCGTGAATACGTTAATCCATTTCCTCCTTCGGAACCCGACTTATTTTGCAGGGAAATCATTGACAGGTGGGTCTATGACGAACTTGATATGGTAAGTTCTGATTCCGGTTCTATTCATTTTCGTTACGCAATATACTTATCACTATATTCATTGTAG
Protein Sequence MSTDSSNQGIAAQRLSPGLEEFTTSWPDPRAGSTSQPRVFQFKAQNIFLTYPRCDISVDVAARTLLTLCHRFQPLYILCSQEHHADGSNHLHILLQTDKTMYTRNPHYFDICGHHPNIQPAKSPDNVRAYILKDPITSFEEGSFQPRGSRSNTSAIPRSGNSGTKDSLMRDIINTSTSKDDYLTRVRNTFPFDWATRLQQFEYSASKLFPEPVREYVNPFPPSEPDLFCREIIDRWVYDELDMVSSDSGSIHFRYAIYLSLYSL