Sugarcane striate virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_002237255.1
Isolate USA
Release date 2017/7/29
Submitter Wardatou,B., Roumagnac,P., Filloux,D., Alcala-Briseno,R.I., Kraberger,S., Fernandez,E., Daugrois,J.-H., Martin,D.P., Lett,J.-M., Comstock,J.C., Varsani,A., Polston,J.E., Rott,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_035179
ATGTCTCCACAAGAAGCATTTCAGGTATCAGGGGGAACCCTACCTTTGGTCCTATCTCCGCCGCCGGCGGACCCGCCGGCTACCCCGTGGTTCAAGCTTATCTTTGGGTTAACAGTCTGTCTATGTGTTGTAGGGTCGATATATCTGACATATCGTTGGTTCCTACGGGATGTCATCATCTTGATTAGAGCGAAGAGACAGCGCACCACGGAGGAGATAGGGTTTGGGAATACCCCCCATAGGCCTGGATCTACTGCTAGCCAAGTGGTCGGCACAGGACCCGGAGGGTGAGGGTTCATCGTGGTCAGGTAATTACAAGGATTTCAGGAGGGCGTTGGCCATGTCGTCTCGCGGACCTAGTAGAAAACGGCCACGTTCTTCTACTCGAGTTGTTAAGTGGCCTTCAGAGGCGCTTAGGAAGGGGTATACGCCTTACAATTCATACCTTCGGGGTACTAAATCGGGTCGCTCAGATAAGAGACCTAATCTGCAGGTGCAGACTTTTTATGCCTGTGGACCAACACAGGTGCAGGTGAAGAAAGGTGGAATTGTTAATCTATTAAATGGTTACACCCGAGGCTCTGATGACAATCAGAGGCACACGTGCGAGACTATAACGTACAAATTGTCGCTGGATTTGCATATAAATATTGCTACTGATTTGTTCAAAAATTGTGCAAGAGGAACAGGTGTCATATGGTTGATTTATGACACTTCCCCTACAGGAACGCAGTTGACGACTCAGCAGATCTTCGCTTATCCGGATGCGCTGTCGTTGTATCCGTATACGTGGAAGGTGGCGAGGGATCAGTGTCATCGATTCATCATCAAGAGGAGATGGACTTTCAGGTTGGAAAGTAATGGGACTTTGGGTTCTTCTGATTATAGTTCGAAGCCTATTGCTCCCTGCAATAATAATGTGTATTTTTCGAAGTTCGTAAAGCGTCTCGGGGTCCGAACTGAATGGAAAAATACGACAGGAGGCGACGCTGGAGATATGAAATCCGGAGGATTATTTCTAGCGTTTGCTGCTGGCAACGGAATGTTGTTTAATGTAGACGGCACTACCAGATTGTATTTCAAGAGTACTGGAAATCAATAAAGAGATATATGATTACAATACAGATAAACGCAGTTTATTCAATATACGTTTGGAAGGTCCGGCTTCTGGGGGAAATACAATATAGGGGGGACAGGACAAAGCAGGCGGCATAGGGCGCGCAAGGGGCAACATATTAAAAAAAAACTGACAATAGTAACTATTATGACTGGCCGAATGGAGTGAAGAACTTCTCCGAAGCTTGCATCCTGTAGACAACGCAGTTGGCGTTGAAGTAGTCCTTCTGGTCTTCTGTCATCTTCTGTAGCCAGTCTTCGTCGTAGTTACAAAGGATTATACTAGGTATGCCGCCTTTAATGCGACGCTTACGACAATACTTTGGATTTACAGTGAAGTCGATTTGACAACCGACCAATTGTTTCCAACAAGGACAGAATTTAAATGGAATATCATCTATTACATTATAATCAGCAGCTATATCATAGCTGCTAAAATCAATATTGTTCTGCCAATAATTATGAGTACCTAGGCTTCTGGCCCAGGTTGTCTTTCCTGTCCTTGAAGGTCCAACGATGTAGAGGCTCTGTTTCCGATAGTGGAAGACCTCAGGGTCCTGGCATGATCGGCCATCCACTGAAGGTCAGATGTTGCCTCTTCTATGCTCGTACAATGATGATTGGCCAACATGTAGGTGTACGGAGTTACCTGGAAGAGATTGTCGTGTTGCCACTCGTCGAGAACTTCTCGACAGATTAGATCGGGTTCAGTCTCAGGGAAATCATTATTGAAGGGCTCTGGCACTGGAGGAAATAGGTAGTTTGCACTATACTCGAATTGGCTAAGATGCTTAGCCCATTCGAAGGGGAATGATTTCTGAATCATTCTTAGGTAGTCCTCTTTAGAGGTGGCAGTTCTGAAGATTTCTTTCATTATGGCGTCCTTGGAACCGGAACCCCGATCACCGGGGTTCCTTGTGTTCCCTCGCCTTGGTTGGAAAGTTCCTCTCTCAACATGTGATATTGGATCCTTAAGGATATAATCTCTAGTGTTATCAGGACTGCGTGCAGCTTGAATATTAGGATGATATTGGTTATCAAGATCAAAGAAAGCAGGATCACGGGTAGTGATCCTGCCCAGAGTCTGAATAAGACAATGAAGGTGTATACCACCGTCCTGGTGATTTTCGGCGCTAACAAGAGCGTAAATAGGACTCCAGCGAAATACATAGGAGCCCACAGGGAGATCGAGGACATACTCACAGTCGAGCGCGCAGCGCGGGTAAGTGAGAAAGGCGTTGCAGCTCCGGAATTCGAAGTTCCTCTTCCACGTGGTTTGGTGGGTGTGGATTGGCTCTGAAGGACTGTCTGAGCTCTCCTGTGTGCCACTCTGGAAGGCATCTTCGGTAGTTGCGGGGGTAGTCATGAACTCTACTCTTCTTACCGCATTTGCGTTCGTGCGCATATATGGGCCGGGCTTTTATAGTCGACGCCCCGGCCTTCCGGTCCATCACTGGGCAAATGCGTAATAATATTACAGCATTTGCCCAGCGAGGCGGGCGATAGCCCGCCGAGCGAAATTTCCACTACGTTAAAGTTGACAGCGACTAAAGTGCTTTGCGCACTGAGTGCTTTTTTCAGTGCGTTCACATTGCTGTCGCCCTTTATATACAGACGCGACGCGGTTAGATGT

Gene Information

NCBI Accession YP_009389274.1
Location 1-291
Protein Name movement protein
Coding Region ATGTCTCCACAAGAAGCATTTCAGGTATCAGGGGGAACCCTACCTTTGGTCCTATCTCCGCCGCCGGCGGACCCGCCGGCTACCCCGTGGTTCAAGCTTATCTTTGGGTTAACAGTCTGTCTATGTGTTGTAGGGTCGATATATCTGACATATCGTTGGTTCCTACGGGATGTCATCATCTTGATTAGAGCGAAGAGACAGCGCACCACGGAGGAGATAGGGTTTGGGAATACCCCCCATAGGCCTGGATCTACTGCTAGCCAAGTGGTCGGCACAGGACCCGGAGGGTGA
Protein Sequence MSPQEAFQVSGGTLPLVLSPPPADPPATPWFKLIFGLTVCLCVVGSIYLTYRWFLRDVIILIRAKRQRTTEEIGFGNTPHRPGSTASQVVGTGPGG

NCBI Accession YP_009389275.1
Location 341-1102
Protein Name capsid protein
Coding Region ATGTCGTCTCGCGGACCTAGTAGAAAACGGCCACGTTCTTCTACTCGAGTTGTTAAGTGGCCTTCAGAGGCGCTTAGGAAGGGGTATACGCCTTACAATTCATACCTTCGGGGTACTAAATCGGGTCGCTCAGATAAGAGACCTAATCTGCAGGTGCAGACTTTTTATGCCTGTGGACCAACACAGGTGCAGGTGAAGAAAGGTGGAATTGTTAATCTATTAAATGGTTACACCCGAGGCTCTGATGACAATCAGAGGCACACGTGCGAGACTATAACGTACAAATTGTCGCTGGATTTGCATATAAATATTGCTACTGATTTGTTCAAAAATTGTGCAAGAGGAACAGGTGTCATATGGTTGATTTATGACACTTCCCCTACAGGAACGCAGTTGACGACTCAGCAGATCTTCGCTTATCCGGATGCGCTGTCGTTGTATCCGTATACGTGGAAGGTGGCGAGGGATCAGTGTCATCGATTCATCATCAAGAGGAGATGGACTTTCAGGTTGGAAAGTAATGGGACTTTGGGTTCTTCTGATTATAGTTCGAAGCCTATTGCTCCCTGCAATAATAATGTGTATTTTTCGAAGTTCGTAAAGCGTCTCGGGGTCCGAACTGAATGGAAAAATACGACAGGAGGCGACGCTGGAGATATGAAATCCGGAGGATTATTTCTAGCGTTTGCTGCTGGCAACGGAATGTTGTTTAATGTAGACGGCACTACCAGATTGTATTTCAAGAGTACTGGAAATCAATAA
Protein Sequence MSSRGPSRKRPRSSTRVVKWPSEALRKGYTPYNSYLRGTKSGRSDKRPNLQVQTFYACGPTQVQVKKGGIVNLLNGYTRGSDDNQRHTCETITYKLSLDLHINIATDLFKNCARGTGVIWLIYDTSPTGTQLTTQQIFAYPDALSLYPYTWKVARDQCHRFIIKRRWTFRLESNGTLGSSDYSSKPIAPCNNNVYFSKFVKRLGVRTEWKNTTGGDAGDMKSGGLFLAFAAGNGMLFNVDGTTRLYFKSTGNQ

NCBI Accession YP_009389276.1
Location 1263-1673,1766-2521
Protein Name replication associated protein
Coding Region ATGCGCACGAACGCAAATGCGGTAAGAAGAGTAGAGTTCATGACTACCCCCGCAACTACCGAAGATGCCTTCCAGAGTGGCACACAGGAGAGCTCAGACAGTCCTTCAGAGCCAATCCACACCCACCAAACCACGTGGAAGAGGAACTTCGAATTCCGGAGCTGCAACGCCTTTCTCACTTACCCGCGCTGCGCGCTCGACTGTGAGTATGTCCTCGATCTCCCTGTGGGCTCCTATGTATTTCGCTGGAGTCCTATTTACGCTCTTGTTAGCGCCGAAAATCACCAGGACGGTGGTATACACCTTCATTGTCTTATTCAGACTCTGGGCAGGATCACTACCCGTGATCCTGCTTTCTTTGATCTTGATAACCAATATCATCCTAATATTCAAGCTGCACGCAGTCCTGATAACACTAGAGATTATATCCTTAAGGATCCAATATCACATGTTGAGAGAGGAACTTTCCAACCAAGGCGAGGGAACACAAGGAACCCCGGTGATCGGGGTTCCGGTTCCAAGGACGCCATAATGAAAGAAATCTTCAGAACTGCCACCTCTAAAGAGGACTACCTAAGAATGATTCAGAAATCATTCCCCTTCGAATGGGCTAAGCATCTTAGCCAATTCGAGTATAGTGCAAACTACCTATTTCCTCCAGTGCCAGAGCCCTTCAATAATGATTTCCCTGAGACTGAACCCGATCTAATCTGTCGAGAAGTTCTCGACGAGTGGCAACACGACAATCTCTTCCAGGACCCTGAGGTCTTCCACTATCGGAAACAGAGCCTCTACATCGTTGGACCTTCAAGGACAGGAAAGACAACCTGGGCCAGAAGCCTAGGTACTCATAATTATTGGCAGAACAATATTGATTTTAGCAGCTATGATATAGCTGCTGATTATAATGTAATAGATGATATTCCATTTAAATTCTGTCCTTGTTGGAAACAATTGGTCGGTTGTCAAATCGACTTCACTGTAAATCCAAAGTATTGTCGTAAGCGTCGCATTAAAGGCGGCATACCTAGTATAATCCTTTGTAACTACGACGAAGACTGGCTACAGAAGATGACAGAAGACCAGAAGGACTACTTCAACGCCAACTGCGTTGTCTACAGGATGCAAGCTTCGGAGAAGTTCTTCACTCCATTCGGCCAGTCATAA
Protein Sequence MRTNANAVRRVEFMTTPATTEDAFQSGTQESSDSPSEPIHTHQTTWKRNFEFRSCNAFLTYPRCALDCEYVLDLPVGSYVFRWSPIYALVSAENHQDGGIHLHCLIQTLGRITTRDPAFFDLDNQYHPNIQAARSPDNTRDYILKDPISHVERGTFQPRRGNTRNPGDRGSGSKDAIMKEIFRTATSKEDYLRMIQKSFPFEWAKHLSQFEYSANYLFPPVPEPFNNDFPETEPDLICREVLDEWQHDNLFQDPEVFHYRKQSLYIVGPSRTGKTTWARSLGTHNYWQNNIDFSSYDIAADYNVIDDIPFKFCPCWKQLVGCQIDFTVNPKYCRKRRIKGGIPSIILCNYDEDWLQKMTEDQKDYFNANCVVYRMQASEKFFTPFGQS

NCBI Accession YP_009389277.1
Location 1586-2521
Protein Name RepA
Coding Region ATGCGCACGAACGCAAATGCGGTAAGAAGAGTAGAGTTCATGACTACCCCCGCAACTACCGAAGATGCCTTCCAGAGTGGCACACAGGAGAGCTCAGACAGTCCTTCAGAGCCAATCCACACCCACCAAACCACGTGGAAGAGGAACTTCGAATTCCGGAGCTGCAACGCCTTTCTCACTTACCCGCGCTGCGCGCTCGACTGTGAGTATGTCCTCGATCTCCCTGTGGGCTCCTATGTATTTCGCTGGAGTCCTATTTACGCTCTTGTTAGCGCCGAAAATCACCAGGACGGTGGTATACACCTTCATTGTCTTATTCAGACTCTGGGCAGGATCACTACCCGTGATCCTGCTTTCTTTGATCTTGATAACCAATATCATCCTAATATTCAAGCTGCACGCAGTCCTGATAACACTAGAGATTATATCCTTAAGGATCCAATATCACATGTTGAGAGAGGAACTTTCCAACCAAGGCGAGGGAACACAAGGAACCCCGGTGATCGGGGTTCCGGTTCCAAGGACGCCATAATGAAAGAAATCTTCAGAACTGCCACCTCTAAAGAGGACTACCTAAGAATGATTCAGAAATCATTCCCCTTCGAATGGGCTAAGCATCTTAGCCAATTCGAGTATAGTGCAAACTACCTATTTCCTCCAGTGCCAGAGCCCTTCAATAATGATTTCCCTGAGACTGAACCCGATCTAATCTGTCGAGAAGTTCTCGACGAGTGGCAACACGACAATCTCTTCCAGGTAACTCCGTACACCTACATGTTGGCCAATCATCATTGTACGAGCATAGAAGAGGCAACATCTGACCTTCAGTGGATGGCCGATCATGCCAGGACCCTGAGGTCTTCCACTATCGGAAACAGAGCCTCTACATCGTTGGACCTTCAAGGACAGGAAAGACAACCTGGGCCAGAAGCCTAG
Protein Sequence MRTNANAVRRVEFMTTPATTEDAFQSGTQESSDSPSEPIHTHQTTWKRNFEFRSCNAFLTYPRCALDCEYVLDLPVGSYVFRWSPIYALVSAENHQDGGIHLHCLIQTLGRITTRDPAFFDLDNQYHPNIQAARSPDNTRDYILKDPISHVERGTFQPRRGNTRNPGDRGSGSKDAIMKEIFRTATSKEDYLRMIQKSFPFEWAKHLSQFEYSANYLFPPVPEPFNNDFPETEPDLICREVLDEWQHDNLFQVTPYTYMLANHHCTSIEEATSDLQWMADHARTLRSSTIGNRASTSLDLQGQERQPGPEA