Sugarcane striate virus
Basic Information
Genus |
Mastrevirus
|
NCBI Assembly |
GCF_002237255.1 |
Isolate |
USA |
Release date |
2017/7/29 |
Submitter |
Wardatou,B., Roumagnac,P., Filloux,D., Alcala-Briseno,R.I., Kraberger,S., Fernandez,E., Daugrois,J.-H., Martin,D.P., Lett,J.-M., Comstock,J.C., Varsani,A., Polston,J.E., Rott,P. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGTCTCCACAAGAAGCATTTCAGGTATCAGGGGGAACCCTACCTTTGGTCCTATCTCCGCCGCCGGCGGACCCGCCGGCTACCCCGTGGTTCAAGCTTATCTTTGGGTTAACAGTCTGTCTATGTGTTGTAGGGTCGATATATCTGACATATCGTTGGTTCCTACGGGATGTCATCATCTTGATTAGAGCGAAGAGACAGCGCACCACGGAGGAGATAGGGTTTGGGAATACCCCCCATAGGCCTGGATCTACTGCTAGCCAAGTGGTCGGCACAGGACCCGGAGGGTGAGGGTTCATCGTGGTCAGGTAATTACAAGGATTTCAGGAGGGCGTTGGCCATGTCGTCTCGCGGACCTAGTAGAAAACGGCCACGTTCTTCTACTCGAGTTGTTAAGTGGCCTTCAGAGGCGCTTAGGAAGGGGTATACGCCTTACAATTCATACCTTCGGGGTACTAAATCGGGTCGCTCAGATAAGAGACCTAATCTGCAGGTGCAGACTTTTTATGCCTGTGGACCAACACAGGTGCAGGTGAAGAAAGGTGGAATTGTTAATCTATTAAATGGTTACACCCGAGGCTCTGATGACAATCAGAGGCACACGTGCGAGACTATAACGTACAAATTGTCGCTGGATTTGCATATAAATATTGCTACTGATTTGTTCAAAAATTGTGCAAGAGGAACAGGTGTCATATGGTTGATTTATGACACTTCCCCTACAGGAACGCAGTTGACGACTCAGCAGATCTTCGCTTATCCGGATGCGCTGTCGTTGTATCCGTATACGTGGAAGGTGGCGAGGGATCAGTGTCATCGATTCATCATCAAGAGGAGATGGACTTTCAGGTTGGAAAGTAATGGGACTTTGGGTTCTTCTGATTATAGTTCGAAGCCTATTGCTCCCTGCAATAATAATGTGTATTTTTCGAAGTTCGTAAAGCGTCTCGGGGTCCGAACTGAATGGAAAAATACGACAGGAGGCGACGCTGGAGATATGAAATCCGGAGGATTATTTCTAGCGTTTGCTGCTGGCAACGGAATGTTGTTTAATGTAGACGGCACTACCAGATTGTATTTCAAGAGTACTGGAAATCAATAAAGAGATATATGATTACAATACAGATAAACGCAGTTTATTCAATATACGTTTGGAAGGTCCGGCTTCTGGGGGAAATACAATATAGGGGGGACAGGACAAAGCAGGCGGCATAGGGCGCGCAAGGGGCAACATATTAAAAAAAAACTGACAATAGTAACTATTATGACTGGCCGAATGGAGTGAAGAACTTCTCCGAAGCTTGCATCCTGTAGACAACGCAGTTGGCGTTGAAGTAGTCCTTCTGGTCTTCTGTCATCTTCTGTAGCCAGTCTTCGTCGTAGTTACAAAGGATTATACTAGGTATGCCGCCTTTAATGCGACGCTTACGACAATACTTTGGATTTACAGTGAAGTCGATTTGACAACCGACCAATTGTTTCCAACAAGGACAGAATTTAAATGGAATATCATCTATTACATTATAATCAGCAGCTATATCATAGCTGCTAAAATCAATATTGTTCTGCCAATAATTATGAGTACCTAGGCTTCTGGCCCAGGTTGTCTTTCCTGTCCTTGAAGGTCCAACGATGTAGAGGCTCTGTTTCCGATAGTGGAAGACCTCAGGGTCCTGGCATGATCGGCCATCCACTGAAGGTCAGATGTTGCCTCTTCTATGCTCGTACAATGATGATTGGCCAACATGTAGGTGTACGGAGTTACCTGGAAGAGATTGTCGTGTTGCCACTCGTCGAGAACTTCTCGACAGATTAGATCGGGTTCAGTCTCAGGGAAATCATTATTGAAGGGCTCTGGCACTGGAGGAAATAGGTAGTTTGCACTATACTCGAATTGGCTAAGATGCTTAGCCCATTCGAAGGGGAATGATTTCTGAATCATTCTTAGGTAGTCCTCTTTAGAGGTGGCAGTTCTGAAGATTTCTTTCATTATGGCGTCCTTGGAACCGGAACCCCGATCACCGGGGTTCCTTGTGTTCCCTCGCCTTGGTTGGAAAGTTCCTCTCTCAACATGTGATATTGGATCCTTAAGGATATAATCTCTAGTGTTATCAGGACTGCGTGCAGCTTGAATATTAGGATGATATTGGTTATCAAGATCAAAGAAAGCAGGATCACGGGTAGTGATCCTGCCCAGAGTCTGAATAAGACAATGAAGGTGTATACCACCGTCCTGGTGATTTTCGGCGCTAACAAGAGCGTAAATAGGACTCCAGCGAAATACATAGGAGCCCACAGGGAGATCGAGGACATACTCACAGTCGAGCGCGCAGCGCGGGTAAGTGAGAAAGGCGTTGCAGCTCCGGAATTCGAAGTTCCTCTTCCACGTGGTTTGGTGGGTGTGGATTGGCTCTGAAGGACTGTCTGAGCTCTCCTGTGTGCCACTCTGGAAGGCATCTTCGGTAGTTGCGGGGGTAGTCATGAACTCTACTCTTCTTACCGCATTTGCGTTCGTGCGCATATATGGGCCGGGCTTTTATAGTCGACGCCCCGGCCTTCCGGTCCATCACTGGGCAAATGCGTAATAATATTACAGCATTTGCCCAGCGAGGCGGGCGATAGCCCGCCGAGCGAAATTTCCACTACGTTAAAGTTGACAGCGACTAAAGTGCTTTGCGCACTGAGTGCTTTTTTCAGTGCGTTCACATTGCTGTCGCCCTTTATATACAGACGCGACGCGGTTAGATGT
Gene Information
NCBI Accession
|
YP_009389274.1
|
Location
|
1-291 |
Protein Name
|
movement protein |
Coding Region
|
ATGTCTCCACAAGAAGCATTTCAGGTATCAGGGGGAACCCTACCTTTGGTCCTATCTCCGCCGCCGGCGGACCCGCCGGCTACCCCGTGGTTCAAGCTTATCTTTGGGTTAACAGTCTGTCTATGTGTTGTAGGGTCGATATATCTGACATATCGTTGGTTCCTACGGGATGTCATCATCTTGATTAGAGCGAAGAGACAGCGCACCACGGAGGAGATAGGGTTTGGGAATACCCCCCATAGGCCTGGATCTACTGCTAGCCAAGTGGTCGGCACAGGACCCGGAGGGTGA |
Protein Sequence
|
MSPQEAFQVSGGTLPLVLSPPPADPPATPWFKLIFGLTVCLCVVGSIYLTYRWFLRDVIILIRAKRQRTTEEIGFGNTPHRPGSTASQVVGTGPGG |
NCBI Accession
|
YP_009389275.1
|
Location
|
341-1102 |
Protein Name
|
capsid protein |
Coding Region
|
ATGTCGTCTCGCGGACCTAGTAGAAAACGGCCACGTTCTTCTACTCGAGTTGTTAAGTGGCCTTCAGAGGCGCTTAGGAAGGGGTATACGCCTTACAATTCATACCTTCGGGGTACTAAATCGGGTCGCTCAGATAAGAGACCTAATCTGCAGGTGCAGACTTTTTATGCCTGTGGACCAACACAGGTGCAGGTGAAGAAAGGTGGAATTGTTAATCTATTAAATGGTTACACCCGAGGCTCTGATGACAATCAGAGGCACACGTGCGAGACTATAACGTACAAATTGTCGCTGGATTTGCATATAAATATTGCTACTGATTTGTTCAAAAATTGTGCAAGAGGAACAGGTGTCATATGGTTGATTTATGACACTTCCCCTACAGGAACGCAGTTGACGACTCAGCAGATCTTCGCTTATCCGGATGCGCTGTCGTTGTATCCGTATACGTGGAAGGTGGCGAGGGATCAGTGTCATCGATTCATCATCAAGAGGAGATGGACTTTCAGGTTGGAAAGTAATGGGACTTTGGGTTCTTCTGATTATAGTTCGAAGCCTATTGCTCCCTGCAATAATAATGTGTATTTTTCGAAGTTCGTAAAGCGTCTCGGGGTCCGAACTGAATGGAAAAATACGACAGGAGGCGACGCTGGAGATATGAAATCCGGAGGATTATTTCTAGCGTTTGCTGCTGGCAACGGAATGTTGTTTAATGTAGACGGCACTACCAGATTGTATTTCAAGAGTACTGGAAATCAATAA |
Protein Sequence
|
MSSRGPSRKRPRSSTRVVKWPSEALRKGYTPYNSYLRGTKSGRSDKRPNLQVQTFYACGPTQVQVKKGGIVNLLNGYTRGSDDNQRHTCETITYKLSLDLHINIATDLFKNCARGTGVIWLIYDTSPTGTQLTTQQIFAYPDALSLYPYTWKVARDQCHRFIIKRRWTFRLESNGTLGSSDYSSKPIAPCNNNVYFSKFVKRLGVRTEWKNTTGGDAGDMKSGGLFLAFAAGNGMLFNVDGTTRLYFKSTGNQ |
NCBI Accession
|
YP_009389276.1
|
Location
|
1263-1673,1766-2521 |
Protein Name
|
replication associated protein |
Coding Region
|
ATGCGCACGAACGCAAATGCGGTAAGAAGAGTAGAGTTCATGACTACCCCCGCAACTACCGAAGATGCCTTCCAGAGTGGCACACAGGAGAGCTCAGACAGTCCTTCAGAGCCAATCCACACCCACCAAACCACGTGGAAGAGGAACTTCGAATTCCGGAGCTGCAACGCCTTTCTCACTTACCCGCGCTGCGCGCTCGACTGTGAGTATGTCCTCGATCTCCCTGTGGGCTCCTATGTATTTCGCTGGAGTCCTATTTACGCTCTTGTTAGCGCCGAAAATCACCAGGACGGTGGTATACACCTTCATTGTCTTATTCAGACTCTGGGCAGGATCACTACCCGTGATCCTGCTTTCTTTGATCTTGATAACCAATATCATCCTAATATTCAAGCTGCACGCAGTCCTGATAACACTAGAGATTATATCCTTAAGGATCCAATATCACATGTTGAGAGAGGAACTTTCCAACCAAGGCGAGGGAACACAAGGAACCCCGGTGATCGGGGTTCCGGTTCCAAGGACGCCATAATGAAAGAAATCTTCAGAACTGCCACCTCTAAAGAGGACTACCTAAGAATGATTCAGAAATCATTCCCCTTCGAATGGGCTAAGCATCTTAGCCAATTCGAGTATAGTGCAAACTACCTATTTCCTCCAGTGCCAGAGCCCTTCAATAATGATTTCCCTGAGACTGAACCCGATCTAATCTGTCGAGAAGTTCTCGACGAGTGGCAACACGACAATCTCTTCCAGGACCCTGAGGTCTTCCACTATCGGAAACAGAGCCTCTACATCGTTGGACCTTCAAGGACAGGAAAGACAACCTGGGCCAGAAGCCTAGGTACTCATAATTATTGGCAGAACAATATTGATTTTAGCAGCTATGATATAGCTGCTGATTATAATGTAATAGATGATATTCCATTTAAATTCTGTCCTTGTTGGAAACAATTGGTCGGTTGTCAAATCGACTTCACTGTAAATCCAAAGTATTGTCGTAAGCGTCGCATTAAAGGCGGCATACCTAGTATAATCCTTTGTAACTACGACGAAGACTGGCTACAGAAGATGACAGAAGACCAGAAGGACTACTTCAACGCCAACTGCGTTGTCTACAGGATGCAAGCTTCGGAGAAGTTCTTCACTCCATTCGGCCAGTCATAA |
Protein Sequence
|
MRTNANAVRRVEFMTTPATTEDAFQSGTQESSDSPSEPIHTHQTTWKRNFEFRSCNAFLTYPRCALDCEYVLDLPVGSYVFRWSPIYALVSAENHQDGGIHLHCLIQTLGRITTRDPAFFDLDNQYHPNIQAARSPDNTRDYILKDPISHVERGTFQPRRGNTRNPGDRGSGSKDAIMKEIFRTATSKEDYLRMIQKSFPFEWAKHLSQFEYSANYLFPPVPEPFNNDFPETEPDLICREVLDEWQHDNLFQDPEVFHYRKQSLYIVGPSRTGKTTWARSLGTHNYWQNNIDFSSYDIAADYNVIDDIPFKFCPCWKQLVGCQIDFTVNPKYCRKRRIKGGIPSIILCNYDEDWLQKMTEDQKDYFNANCVVYRMQASEKFFTPFGQS |
NCBI Accession
|
YP_009389277.1
|
Location
|
1586-2521 |
Protein Name
|
RepA |
Coding Region
|
ATGCGCACGAACGCAAATGCGGTAAGAAGAGTAGAGTTCATGACTACCCCCGCAACTACCGAAGATGCCTTCCAGAGTGGCACACAGGAGAGCTCAGACAGTCCTTCAGAGCCAATCCACACCCACCAAACCACGTGGAAGAGGAACTTCGAATTCCGGAGCTGCAACGCCTTTCTCACTTACCCGCGCTGCGCGCTCGACTGTGAGTATGTCCTCGATCTCCCTGTGGGCTCCTATGTATTTCGCTGGAGTCCTATTTACGCTCTTGTTAGCGCCGAAAATCACCAGGACGGTGGTATACACCTTCATTGTCTTATTCAGACTCTGGGCAGGATCACTACCCGTGATCCTGCTTTCTTTGATCTTGATAACCAATATCATCCTAATATTCAAGCTGCACGCAGTCCTGATAACACTAGAGATTATATCCTTAAGGATCCAATATCACATGTTGAGAGAGGAACTTTCCAACCAAGGCGAGGGAACACAAGGAACCCCGGTGATCGGGGTTCCGGTTCCAAGGACGCCATAATGAAAGAAATCTTCAGAACTGCCACCTCTAAAGAGGACTACCTAAGAATGATTCAGAAATCATTCCCCTTCGAATGGGCTAAGCATCTTAGCCAATTCGAGTATAGTGCAAACTACCTATTTCCTCCAGTGCCAGAGCCCTTCAATAATGATTTCCCTGAGACTGAACCCGATCTAATCTGTCGAGAAGTTCTCGACGAGTGGCAACACGACAATCTCTTCCAGGTAACTCCGTACACCTACATGTTGGCCAATCATCATTGTACGAGCATAGAAGAGGCAACATCTGACCTTCAGTGGATGGCCGATCATGCCAGGACCCTGAGGTCTTCCACTATCGGAAACAGAGCCTCTACATCGTTGGACCTTCAAGGACAGGAAAGACAACCTGGGCCAGAAGCCTAG |
Protein Sequence
|
MRTNANAVRRVEFMTTPATTEDAFQSGTQESSDSPSEPIHTHQTTWKRNFEFRSCNAFLTYPRCALDCEYVLDLPVGSYVFRWSPIYALVSAENHQDGGIHLHCLIQTLGRITTRDPAFFDLDNQYHPNIQAARSPDNTRDYILKDPISHVERGTFQPRRGNTRNPGDRGSGSKDAIMKEIFRTATSKEDYLRMIQKSFPFEWAKHLSQFEYSANYLFPPVPEPFNNDFPETEPDLICREVLDEWQHDNLFQVTPYTYMLANHHCTSIEEATSDLQWMADHARTLRSSTIGNRASTSLDLQGQERQPGPEA |