Sugarcane chlorotic streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_001891015.1
Isolate Nigeria
Release date 2016/12/8
Submitter Yahaya,A., Dangora,D.B., Alegbejo,M.D., Kumar,P.L., Alabi,O.J.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_032004
ACCGCGCTTTCTCATGCGAGCCCGCTAGGGCGAGCGGTCCCCGTTGCTGGGTGGATTTGTCTTTCTAAAGGCTGCCAGTTTAAAATGCAGCCGGCGCCAAGGACTATAAGATGCTTGTATGTGGGATCGCACTATGGAGGGCTTTTATCAAGCACCTCCTCTTTTGCCTTTGGGTGTTCGGCCTCAGGTTGCTGCTGCAGCTCCTTACAGCGGAAGTCTGCCGTGGAGTCGCGTCGGTGAGGTTGCTATTTTCACCTTTGTTGCAGTGCTAGGGCTGTACCTGCTGTGGCTTTGGGTGTTGCGAGATCTTTTCTTTGTTGTTAAGGCTCAGCGAGGTCGATCTACGGAGGAGCTGCACTTTGGGCCCACTGAGGTCCCTTCAGTACCCTCTGCAAGAGTAGATCTGTCGGCGCCTCCTGTAGGGCCTTCCGGTACAGCCCCGCCGCGCCCGTTCCTAGGGTAGGCGTTGCCTGCAGCATGTCATCTTCCGGTGCGAAACGCAAGAGGTCCGATGAGGGATCTTGGTCGAAGCGTAAGTCTGGTAAGAAGCAGCCGAGAGTGTCCTCCTCTCGTCGCGCTGGCCCTGCCCGAGGGCCTCGTCCTGCTCTTCAGATCGCCAACTATCAGGCGGCGGGCACCACTATGGTAACTGTCCCTTCGGGGGGCGTTTGTGAGTTGCTTGCTACCTATGCCCGAGGTTCTGATGAGGGCAACCGTCACACCAACGAGACTGTGACGTACAAGGTCGCTATGGATTACCACTTCGTGCTTACAGCAGCTGCGTGCAGGTACTCGTCCATCGGTGTTGGGGTCGCGTGGTTGGTGTATGACGCACAGCCCACGGGCAACGCCCCCCAGGTTACAGATATATTTCCGCATCCGGATTCTCTGGTTGCGTTCCCGTATACTTGGAAGGTCGGCAGGGAAGTGTGTCATCGCTTTGTGGTTAAGAGGCGGTGGACTTTCACGATGGAATCAGACGGGAGGATTGGCTCTGACATACCTCGCTCGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTGACCGGACTCGGTGTAAAAACGGAGTGGAAGAATGTAGCGGACGGAGGAGTCGGTGCCATTAAGAAGGGTGCCCTGTATTTTGTAATTGCCCCTGGCAATGGTCAGGAATTTACCGTGCATGGAAATGCACGGTTGTACTTCAAGTCTGTTGGGAACCAGTGATCTCCCGATATAATAAAAACATTTTTATTATTGTTTTGATCTTGGAACGCGGAGCGTTACATTACATTCAGAAGTCTGCCGATGGGCAGACATAAAATACAAACATTACACAACCGGCGGCCAGATCGTGGCGGCTAAGGGATAGCGAATGAAAAAAACACACTAAAAAAACTGACATTATTAAAATTGGTCGGCGCTCAGACTTCGACAGAAGGATGGGCTGTAGCTGACACCGCTGGCCGGCCAAAGAACCGTTCACCCGGTTCCATGATGTATACAGTGCAGTTTGCGTAGAAATAGTCCTGCTGAGCAGGCGTCATGTCCTTCAGCCAGTCCTCGTCCTCATTGGCTAGCACAATAGTTGAAATGCTTCTTGATGCGACCTTCTTCCTTTTGCCGTACTTCGGGTTTACAATGTAATCCTTCTGGCAGCCAATTAACTGCTTCCAGCAAGGACAGTATTTGAAAGGTATATCATCAATTACGTTGACGACTGCCTCTTCGTCATAAGAGGTCCAGGCTACATTGTTTTGCCAGTAATTATGTCTTCCCAGGCTTCTAGCCCAAGATGACTTTCCTGTCCTTGTTGGGCCGAGGATGTAGAGGCTTTGCTTTCTTGTGGCTGTAGAGTTCTGGATGTTGATGACATCCATTCAAGGTCAGATATTGCATCTTGTAAGGTGAGGCAGTTAGGATTTGCAAGCATGTAGGCATTTGGACTCACCTGGTAGAGATTGGTGTTCAACCAGTCTTCTATCGATGTCATGTTTAGTAAATCTGGTTGTGACGGAGGATGTGGACTGGTGTATATTTCATGTGTCTCAGGGAACAGTTTGTTGGCTGAATACTCAAAGTATTGCAGCTTGGTTGCCCACTCGTAGGGGAGTGCCTTCTGAAGCATGGAAAGGTACTCTTGCTTTGAGGTGGAGTGCTCAATGATATCTCTAACGATATCATCCTTGGAAGGTTTAGGCTGTTTTGGCTCAGTCGAAGCTCCAAGAAAAGTTTTTTTTCTTGGGATAAATGTACCTTTCTCCCAAGTATTGACTGGGTTCTTCAGGATGTACTCACGTACCTTGTCAGAGCTCTTTGCACTCTGAATGTTAGGATGAAATCCAGAGATGTCGAAGAACCTCTGGTTGCTTGTGTAAACTGGCTTGACGCTCTGTGCTAGGGCGTGTAGATGCCAGTCTCCATCTTCATGTGTTTCTCGACTTACAAGGATGTAAGCAGGATTCCATGGCGCAATGAGGCTCCATAGTTCCAAACCTACAGCCTCTGGCTCTAAGTTGCAGTGTGGGTATGTGAGGAAGGTGTTGACGTTGCGATGCTTGAATCTACGGCTAGGATTAGTGCTCTCATCTGATCCTACCGCTTCCATTGAGCTGCCTGTGCGGATTTGGAGCCTCAGAGAACTCTCCTACAGATTTGCGTTTTAGAATACCGCACTGCCTTGCGGCTTTTATAGACTTGTTGCTGGGCCGGGCCTCCATTTTTTGGTGGGCCGGAATGAGAAAGCGCAAATCTAATATT

Gene Information

NCBI Accession YP_009325923.1
Location 119-463
Protein Name movement protein
Coding Region ATGTGGGATCGCACTATGGAGGGCTTTTATCAAGCACCTCCTCTTTTGCCTTTGGGTGTTCGGCCTCAGGTTGCTGCTGCAGCTCCTTACAGCGGAAGTCTGCCGTGGAGTCGCGTCGGTGAGGTTGCTATTTTCACCTTTGTTGCAGTGCTAGGGCTGTACCTGCTGTGGCTTTGGGTGTTGCGAGATCTTTTCTTTGTTGTTAAGGCTCAGCGAGGTCGATCTACGGAGGAGCTGCACTTTGGGCCCACTGAGGTCCCTTCAGTACCCTCTGCAAGAGTAGATCTGTCGGCGCCTCCTGTAGGGCCTTCCGGTACAGCCCCGCCGCGCCCGTTCCTAGGGTAG
Protein Sequence MWDRTMEGFYQAPPLLPLGVRPQVAAAAPYSGSLPWSRVGEVAIFTFVAVLGLYLLWLWVLRDLFFVVKAQRGRSTEELHFGPTEVPSVPSARVDLSAPPVGPSGTAPPRPFLG

NCBI Accession YP_009325924.1
Location 478-1224
Protein Name coat protein
Coding Region ATGTCATCTTCCGGTGCGAAACGCAAGAGGTCCGATGAGGGATCTTGGTCGAAGCGTAAGTCTGGTAAGAAGCAGCCGAGAGTGTCCTCCTCTCGTCGCGCTGGCCCTGCCCGAGGGCCTCGTCCTGCTCTTCAGATCGCCAACTATCAGGCGGCGGGCACCACTATGGTAACTGTCCCTTCGGGGGGCGTTTGTGAGTTGCTTGCTACCTATGCCCGAGGTTCTGATGAGGGCAACCGTCACACCAACGAGACTGTGACGTACAAGGTCGCTATGGATTACCACTTCGTGCTTACAGCAGCTGCGTGCAGGTACTCGTCCATCGGTGTTGGGGTCGCGTGGTTGGTGTATGACGCACAGCCCACGGGCAACGCCCCCCAGGTTACAGATATATTTCCGCATCCGGATTCTCTGGTTGCGTTCCCGTATACTTGGAAGGTCGGCAGGGAAGTGTGTCATCGCTTTGTGGTTAAGAGGCGGTGGACTTTCACGATGGAATCAGACGGGAGGATTGGCTCTGACATACCTCGCTCGACGGATGCTTGGCCGCCCTGCAAGCGGAGTATTTACTTCCACAAGTTTGTGACCGGACTCGGTGTAAAAACGGAGTGGAAGAATGTAGCGGACGGAGGAGTCGGTGCCATTAAGAAGGGTGCCCTGTATTTTGTAATTGCCCCTGGCAATGGTCAGGAATTTACCGTGCATGGAAATGCACGGTTGTACTTCAAGTCTGTTGGGAACCAGTGA
Protein Sequence MSSSGAKRKRSDEGSWSKRKSGKKQPRVSSSRRAGPARGPRPALQIANYQAAGTTMVTVPSGGVCELLATYARGSDEGNRHTNETVTYKVAMDYHFVLTAAACRYSSIGVGVAWLVYDAQPTGNAPQVTDIFPHPDSLVAFPYTWKVGREVCHRFVVKRRWTFTMESDGRIGSDIPRSTDAWPPCKRSIYFHKFVTGLGVKTEWKNVADGGVGAIKKGALYFVIAPGNGQEFTVHGNARLYFKSVGNQ

NCBI Accession YP_009325925.1
Location 1422-1856,1949-2605
Protein Name Rep-associated protein
Coding Region ATGGAAGCGGTAGGATCAGATGAGAGCACTAATCCTAGCCGTAGATTCAAGCATCGCAACGTCAACACCTTCCTCACATACCCACACTGCAACTTAGAGCCAGAGGCTGTAGGTTTGGAACTATGGAGCCTCATTGCGCCATGGAATCCTGCTTACATCCTTGTAAGTCGAGAAACACATGAAGATGGAGACTGGCATCTACACGCCCTAGCACAGAGCGTCAAGCCAGTTTACACAAGCAACCAGAGGTTCTTCGACATCTCTGGATTTCATCCTAACATTCAGAGTGCAAAGAGCTCTGACAAGGTACGTGAGTACATCCTGAAGAACCCAGTCAATACTTGGGAGAAAGGTACATTTATCCCAAGAAAAAAAACTTTTCTTGGAGCTTCGACTGAGCCAAAACAGCCTAAACCTTCCAAGGATGATATCGTTAGAGATATCATTGAGCACTCCACCTCAAAGCAAGAGTACCTTTCCATGCTTCAGAAGGCACTCCCCTACGAGTGGGCAACCAAGCTGCAATACTTTGAGTATTCAGCCAACAAACTGTTCCCTGAGACACATGAAATATACACCAGTCCACATCCTCCGTCACAACCAGATTTACTAAACATGACATCGATAGAAGACTGGTTGAACACCAATCTCTACCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAGCCTGGACCTCTTATGACGAAGAGGCAGTCGTCAACGTAATTGATGATATACCTTTCAAATACTGTCCTTGCTGGAAGCAGTTAATTGGCTGCCAGAAGGATTACATTGTAAACCCGAAGTACGGCAAAAGGAAGAAGGTCGCATCAAGAAGCATTTCAACTATTGTGCTAGCCAATGAGGACGAGGACTGGCTGAAGGACATGACGCCTGCTCAGCAGGACTATTTCTACGCAAACTGCACTGTATACATCATGGAACCGGGTGAACGGTTCTTTGGCCGGCCAGCGGTGTCAGCTACAGCCCATCCTTCTGTCGAAGTCTGA
Protein Sequence MEAVGSDESTNPSRRFKHRNVNTFLTYPHCNLEPEAVGLELWSLIAPWNPAYILVSRETHEDGDWHLHALAQSVKPVYTSNQRFFDISGFHPNIQSAKSSDKVREYILKNPVNTWEKGTFIPRKKTFLGASTEPKQPKPSKDDIVRDIIEHSTSKQEYLSMLQKALPYEWATKLQYFEYSANKLFPETHEIYTSPHPPSQPDLLNMTSIEDWLNTNLYQNSTATRKQSLYILGPTRTGKSSWARSLGRHNYWQNNVAWTSYDEEAVVNVIDDIPFKYCPCWKQLIGCQKDYIVNPKYGKRKKVASRSISTIVLANEDEDWLKDMTPAQQDYFYANCTVYIMEPGERFFGRPAVSATAHPSVEV

NCBI Accession YP_009325926.1
Location 1422-1877
Protein Name RepB
Coding Region ATGGATGTCATCAACATCCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAGCCTGGACCTCTTATGACGAAGAGGCAGTCGTCAACGTAATTGATGATATACCTTTCAAATACTGTCCTTGCTGGAAGCAGTTAATTGGCTGCCAGAAGGATTACATTGTAAACCCGAAGTACGGCAAAAGGAAGAAGGTCGCATCAAGAAGCATTTCAACTATTGTGCTAGCCAATGAGGACGAGGACTGGCTGAAGGACATGACGCCTGCTCAGCAGGACTATTTCTACGCAAACTGCACTGTATACATCATGGAACCGGGTGAACGGTTCTTTGGCCGGCCAGCGGTGTCAGCTACAGCCCATCCTTCTGTCGAAGTCTGA
Protein Sequence MDVINIQNSTATRKQSLYILGPTRTGKSSWARSLGRHNYWQNNVAWTSYDEEAVVNVIDDIPFKYCPCWKQLIGCQKDYIVNPKYGKRKKVASRSISTIVLANEDEDWLKDMTPAQQDYFYANCTVYIMEPGERFFGRPAVSATAHPSVEV

NCBI Accession YP_009325927.1
Location 1745-2605
Protein Name RepA
Coding Region ATGGAAGCGGTAGGATCAGATGAGAGCACTAATCCTAGCCGTAGATTCAAGCATCGCAACGTCAACACCTTCCTCACATACCCACACTGCAACTTAGAGCCAGAGGCTGTAGGTTTGGAACTATGGAGCCTCATTGCGCCATGGAATCCTGCTTACATCCTTGTAAGTCGAGAAACACATGAAGATGGAGACTGGCATCTACACGCCCTAGCACAGAGCGTCAAGCCAGTTTACACAAGCAACCAGAGGTTCTTCGACATCTCTGGATTTCATCCTAACATTCAGAGTGCAAAGAGCTCTGACAAGGTACGTGAGTACATCCTGAAGAACCCAGTCAATACTTGGGAGAAAGGTACATTTATCCCAAGAAAAAAAACTTTTCTTGGAGCTTCGACTGAGCCAAAACAGCCTAAACCTTCCAAGGATGATATCGTTAGAGATATCATTGAGCACTCCACCTCAAAGCAAGAGTACCTTTCCATGCTTCAGAAGGCACTCCCCTACGAGTGGGCAACCAAGCTGCAATACTTTGAGTATTCAGCCAACAAACTGTTCCCTGAGACACATGAAATATACACCAGTCCACATCCTCCGTCACAACCAGATTTACTAAACATGACATCGATAGAAGACTGGTTGAACACCAATCTCTACCAGGTGAGTCCAAATGCCTACATGCTTGCAAATCCTAACTGCCTCACCTTACAAGATGCAATATCTGACCTTGAATGGATGTCATCAACATCCAGAACTCTACAGCCACAAGAAAGCAAAGCCTCTACATCCTCGGCCCAACAAGGACAGGAAAGTCATCTTGGGCTAGAAGCCTGGGAAGACATAATTACTGGCAAAACAATGTAG
Protein Sequence MEAVGSDESTNPSRRFKHRNVNTFLTYPHCNLEPEAVGLELWSLIAPWNPAYILVSRETHEDGDWHLHALAQSVKPVYTSNQRFFDISGFHPNIQSAKSSDKVREYILKNPVNTWEKGTFIPRKKTFLGASTEPKQPKPSKDDIVRDIIEHSTSKQEYLSMLQKALPYEWATKLQYFEYSANKLFPETHEIYTSPHPPSQPDLLNMTSIEDWLNTNLYQVSPNAYMLANPNCLTLQDAISDLEWMSSTSRTLQPQESKASTSSAQQGQESHLGLEAWEDIITGKTM