Sporobolus striate mosaic virus 1
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000897615.1 |
| Isolate |
Australia |
| Release date |
2015/2/22 |
| Submitter |
Kraberger,S., Thomas,J.E., Geering,A.D., Dayaram,A., Stainton,D., Hadfield,J., Walters,M., Parmenter,K.S., van Brunschot,S., Collings,D.A., Martin,D.P., Varsani,A., Geering,A., Parmenter,K. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGGAGGCGGGCCATCTTCCATCGCAGCAGGGATTCCCATCGCCTTTGGCTTATTCCCAGCCGAGCCCCAGCGGAGTCGGGAACGACTCCGCGTGGAGGACGCTCGTCCTGGTATTCACCATCACCGCAGTTGGTCTGGCGTGTTCATTTGCGCTTTACCGTCTGTGTGTGAAGGACCTTGTTCTGTTGCTGAGGGCGAAGCGCTCAAGGACGGTGACGGAACTGGGGTTCGGCGGCACCCCGGCGCGCCAAGACGGCGTTCGTACCGGGAGTGGGGTTCCCGGGCTTGGATAGTTTCCACCAGGACCGGTTGCTTACATACGGGGACTTCCGGCGAGCGCTCGAGCTGAGCCGAGCCATGCCGTCGTCCACGCGTGCTGCTGTGAGGCCTAAGCGTAAGAGGGTTGGGAAACAACCGTGGCCCAGAGAACTATGGCAGAGGGGGATTACCCCACGAAACAGCAGGATCCGGTCGACGGGTCTCATCGATGAGACCCGTTCGCCCTTTCGTTGCAGTAATGAAGTATACATGGACACCCAACGGGGCAGGAGTTCAGGTTGCTGCACCGGGTGCTGTCTATCTCATGACGAACTTGCCCCGGGGGAGCAGCGAAGACCAGCGACACACGGGGGAGACCTTGGCTTACAAGCTGGGAATCGACCTAGAGGTACAGGTTGTGTCAGCTCAGTTTGCCTATGCCAACAAGAGTACCCATGTCATGTGGCTGGTCTATGACGCACAGCCGAGCGGTCGTCTTCCGGCGACCTCTGATATCTTCGACTACGTTGAGGGGTTCCAGTATATCCCACACGTGTGGAAGGTGAGGCGAGATCTGTGCCACCGGTACATTGTCAAACGGAAGTGGATGATAAACCTCGAGACCAATGGAGCGTCCTTCGGGGTGGACTTCAGTAGCAGACCGGTCACTGCTCCAAAGTACCGGGCTAGCTTCCACAAGTTCGTTAAGCGGTTAGGCGTACGAACTGAGTGGAAGAACTCCGACACGGGTGAGATCGGAGACATCCAGAGGGGAGCGTTGTACTTGGTGGTTGCTCCAGGCAACAACGTTCCGATAAACATTAGGGGGTACTTCCGTTTGTATTTCAAGAGTGTCGGTAATCAGTAGGATTACCGTCTTTGTAATCGAAGATTAATAAGAAGCGAAGCTTTTATTCATATAGCGTGCAGTGCACAGAGAAATTACAACACACACAATCGCAGCCGAGGCTTAAGACGAGTCTCAGCGATTCCCTGCGATCATCTACATCAAAAAAAAACACACTTTATAATAATTCAGGCTGAGTCGCTGGCGTAAAGCCGGGTCCGGTATGAAGCTCTCTTCAGATGTCATGTAGTGGATCTGCACGTTCGCTTCGAAGTACGACACCTGCCCGGGTGTCATATCGGCTAGCCAGTCCTCGTCCTCATTCACCAGTATGATAGTAGGGATACCTCCCTTTATCAGTTTCTTCTTACCATATTTAGGATTTACAGTAAAGTCCTTCTGGCAGCCGATCAGAGCCTTCCAGTGAGGACAGAACTTGAAGGGGATGTCGTCGATCACATTGTATTGGGCCTCCTGGTCGTATGTGGCCCAATCCACCTGCATATTGTAGTAGTTATGACGTCCTAACACCCTGGCCCAAGATTTCTTACCGGTACGAGTTGGTCCGCAGATGTAGAGGGATTTCCGGCGCCCTGCTCCGTCCTAGTAACGTCAGCCATCCACTTTAAATCAGATTCGGCGTCCTCGGCCGGATGTAGACAAGAGTACGCGAAGGGACTTACGATGTAGCACTGCAGGTTCTCCTGATACCAGTCCAAGAGGTTCTCATGACATGTGAGATCCGTAGTCTGGTACTGGCTCTGGTACTGGGGAGTGATGTCAGGGAAGAGCTTGGATGCAGAGTATTCGAACTGGGCTAGTCTAGTAGCCCACTCAAACGGGAAGGACTTTCGGACCATCCCGAGATAATCGTCCCGGGTGGTAGCGGTTCGGAGGATGTACCGCATGCGCTCGTCCTTGACGGCCGAGTCGCTGCGCCTCCTATCTGTGTGTTTGGGAGGTCTTCCGCCAGGGGCGACAAACTTCCCCCTGGCTGACTGGCTAACAGGCTCTTTGAGGATATACTCTTTGACCTTAGTAGCGCTTCTAACTGTTTGGATATTTGGGTGATTTCCACCCAAATCAGCAAAAGAAGAGTCGCGAGACCGATATTGATCAGTAAGCTGCACAAGGCAATGAACATGGAAGCCGGAGTCCTGATGCAGCTCACGAACAGAAAGAATATACAGAGGCTTATGAGACGAAAATTTGTCCCAGAGAGCATCTGTGATTAGGGCTGGATCGATCTCACACCGGGAGTAGGTGAGGAAGATGTTCTTCCCTCGGAAGTGGAATCCGTCGACGCTCTCCTCGTCGGAGGAAGAGATGGCGAACGGGGACGGAGGGCGAGAGGGTCCAGACATGTTCTAGTCCTTAGCCGTTTTCTGGGTGTGGAGCTCTCTAAAACTCCTAAGACATGCGTCGAAACGTTTGCCCAGGCCGTGGGCTTAAATAGATAGCGGGCCGAAAGGCACGCTGCGAGTGGGGGGCGGGATGCGACGTTGATAGACGCGCGATAATATTACCCCGCCCCCCACTCGCGAGGGCGACGTGTGCGCTCTACGTCGCCCGAGCGGGCCGGCTTTTGTACTGGGCCGCATCTTTTCCCGGCCTGAGTGCGCAACACGGGTGTTCGATCGGGACACCGCGTCTTTAAAGTCAACATCTTTAGGTCCTTCGACG
Gene Information
|
NCBI Accession
|
YP_006666525.1
|
|
Location
|
1-294 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGAGGCGGGCCATCTTCCATCGCAGCAGGGATTCCCATCGCCTTTGGCTTATTCCCAGCCGAGCCCCAGCGGAGTCGGGAACGACTCCGCGTGGAGGACGCTCGTCCTGGTATTCACCATCACCGCAGTTGGTCTGGCGTGTTCATTTGCGCTTTACCGTCTGTGTGTGAAGGACCTTGTTCTGTTGCTGAGGGCGAAGCGCTCAAGGACGGTGACGGAACTGGGGTTCGGCGGCACCCCGGCGCGCCAAGACGGCGTTCGTACCGGGAGTGGGGTTCCCGGGCTTGGATAG |
|
Protein Sequence
|
MEAGHLPSQQGFPSPLAYSQPSPSGVGNDSAWRTLVLVFTITAVGLACSFALYRLCVKDLVLLLRAKRSRTVTELGFGGTPARQDGVRTGSGVPGLG |
|
NCBI Accession
|
YP_006666526.1
|
|
Location
|
489-1127 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGAGACCCGTTCGCCCTTTCGTTGCAGTAATGAAGTATACATGGACACCCAACGGGGCAGGAGTTCAGGTTGCTGCACCGGGTGCTGTCTATCTCATGACGAACTTGCCCCGGGGGAGCAGCGAAGACCAGCGACACACGGGGGAGACCTTGGCTTACAAGCTGGGAATCGACCTAGAGGTACAGGTTGTGTCAGCTCAGTTTGCCTATGCCAACAAGAGTACCCATGTCATGTGGCTGGTCTATGACGCACAGCCGAGCGGTCGTCTTCCGGCGACCTCTGATATCTTCGACTACGTTGAGGGGTTCCAGTATATCCCACACGTGTGGAAGGTGAGGCGAGATCTGTGCCACCGGTACATTGTCAAACGGAAGTGGATGATAAACCTCGAGACCAATGGAGCGTCCTTCGGGGTGGACTTCAGTAGCAGACCGGTCACTGCTCCAAAGTACCGGGCTAGCTTCCACAAGTTCGTTAAGCGGTTAGGCGTACGAACTGAGTGGAAGAACTCCGACACGGGTGAGATCGGAGACATCCAGAGGGGAGCGTTGTACTTGGTGGTTGCTCCAGGCAACAACGTTCCGATAAACATTAGGGGGTACTTCCGTTTGTATTTCAAGAGTGTCGGTAATCAGTAG |
|
Protein Sequence
|
MRPVRPFVAVMKYTWTPNGAGVQVAAPGAVYLMTNLPRGSSEDQRHTGETLAYKLGIDLEVQVVSAQFAYANKSTHVMWLVYDAQPSGRLPATSDIFDYVEGFQYIPHVWKVRRDLCHRYIVKRKWMINLETNGASFGVDFSSRPVTAPKYRASFHKFVKRLGVRTEWKNSDTGEIGDIQRGALYLVVAPGNNVPINIRGYFRLYFKSVGNQ |
|
NCBI Accession
|
YP_006666527.1
|
|
Location
|
1263-1709,1790-2470 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGTCTGGACCCTCTCGCCCTCCGTCCCCGTTCGCCATCTCTTCCTCCGACGAGGAGAGCGTCGACGGATTCCACTTCCGAGGGAAGAACATCTTCCTCACCTACTCCCGGTGTGAGATCGATCCAGCCCTAATCACAGATGCTCTCTGGGACAAATTTTCGTCTCATAAGCCTCTGTATATTCTTTCTGTTCGTGAGCTGCATCAGGACTCCGGCTTCCATGTTCATTGCCTTGTGCAGCTTACTGATCAATATCGGTCTCGCGACTCTTCTTTTGCTGATTTGGGTGGAAATCACCCAAATATCCAAACAGTTAGAAGCGCTACTAAGGTCAAAGAGTATATCCTCAAAGAGCCTGTTAGCCAGTCAGCCAGGGGGAAGTTTGTCGCCCCTGGCGGAAGACCTCCCAAACACACAGATAGGAGGCGCAGCGACTCGGCCGTCAAGGACGAGCGCATGCGGTACATCCTCCGAACCGCTACCACCCGGGACGATTATCTCGGGATGGTCCGAAAGTCCTTCCCGTTTGAGTGGGCTACTAGACTAGCCCAGTTCGAATACTCTGCATCCAAGCTCTTCCCTGACATCACTCCCCAGTACCAGAGCCAGTACCAGACTACGGATCTCACATGTCATGAGAACCTCTTGGACTGGTATCAGGAGAACCTGCAGTGCTACATCGACGGAGCAGGGCGCCGGAAATCCCTCTACATCTGCGGACCAACTCGTACCGGTAAGAAATCTTGGGCCAGGGTGTTAGGACGTCATAACTACTACAATATGCAGGTGGATTGGGCCACATACGACCAGGAGGCCCAATACAATGTGATCGACGACATCCCCTTCAAGTTCTGTCCTCACTGGAAGGCTCTGATCGGCTGCCAGAAGGACTTTACTGTAAATCCTAAATATGGTAAGAAGAAACTGATAAAGGGAGGTATCCCTACTATCATACTGGTGAATGAGGACGAGGACTGGCTAGCCGATATGACACCCGGGCAGGTGTCGTACTTCGAAGCGAACGTGCAGATCCACTACATGACATCTGAAGAGAGCTTCATACCGGACCCGGCTTTACGCCAGCGACTCAGCCTGAATTATTATAAAGTGTGTTTTTTTTTGATGTAG |
|
Protein Sequence
|
MSGPSRPPSPFAISSSDEESVDGFHFRGKNIFLTYSRCEIDPALITDALWDKFSSHKPLYILSVRELHQDSGFHVHCLVQLTDQYRSRDSSFADLGGNHPNIQTVRSATKVKEYILKEPVSQSARGKFVAPGGRPPKHTDRRRSDSAVKDERMRYILRTATTRDDYLGMVRKSFPFEWATRLAQFEYSASKLFPDITPQYQSQYQTTDLTCHENLLDWYQENLQCYIDGAGRRKSLYICGPTRTGKKSWARVLGRHNYYNMQVDWATYDQEAQYNVIDDIPFKFCPHWKALIGCQKDFTVNPKYGKKKLIKGGIPTIILVNEDEDWLADMTPGQVSYFEANVQIHYMTSEESFIPDPALRQRLSLNYYKVCFFLM |
|
NCBI Accession
|
YP_006666528.1
|
|
Location
|
1631-2470 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGTCTGGACCCTCTCGCCCTCCGTCCCCGTTCGCCATCTCTTCCTCCGACGAGGAGAGCGTCGACGGATTCCACTTCCGAGGGAAGAACATCTTCCTCACCTACTCCCGGTGTGAGATCGATCCAGCCCTAATCACAGATGCTCTCTGGGACAAATTTTCGTCTCATAAGCCTCTGTATATTCTTTCTGTTCGTGAGCTGCATCAGGACTCCGGCTTCCATGTTCATTGCCTTGTGCAGCTTACTGATCAATATCGGTCTCGCGACTCTTCTTTTGCTGATTTGGGTGGAAATCACCCAAATATCCAAACAGTTAGAAGCGCTACTAAGGTCAAAGAGTATATCCTCAAAGAGCCTGTTAGCCAGTCAGCCAGGGGGAAGTTTGTCGCCCCTGGCGGAAGACCTCCCAAACACACAGATAGGAGGCGCAGCGACTCGGCCGTCAAGGACGAGCGCATGCGGTACATCCTCCGAACCGCTACCACCCGGGACGATTATCTCGGGATGGTCCGAAAGTCCTTCCCGTTTGAGTGGGCTACTAGACTAGCCCAGTTCGAATACTCTGCATCCAAGCTCTTCCCTGACATCACTCCCCAGTACCAGAGCCAGTACCAGACTACGGATCTCACATGTCATGAGAACCTCTTGGACTGGTATCAGGAGAACCTGCAGTGCTACATCGTAAGTCCCTTCGCGTACTCTTGTCTACATCCGGCCGAGGACGCCGAATCTGATTTAAAGTGGATGGCTGACGTTACTAGGACGGAGCAGGGCGCCGGAAATCCCTCTACATCTGCGGACCAACTCGTACCGGTAAGAAATCTTGGGCCAGGGTGTTAG |
|
Protein Sequence
|
MSGPSRPPSPFAISSSDEESVDGFHFRGKNIFLTYSRCEIDPALITDALWDKFSSHKPLYILSVRELHQDSGFHVHCLVQLTDQYRSRDSSFADLGGNHPNIQTVRSATKVKEYILKEPVSQSARGKFVAPGGRPPKHTDRRRSDSAVKDERMRYILRTATTRDDYLGMVRKSFPFEWATRLAQFEYSASKLFPDITPQYQSQYQTTDLTCHENLLDWYQENLQCYIVSPFAYSCLHPAEDAESDLKWMADVTRTEQGAGNPSTSADQLVPVRNLGPGC |