Sorghum arundinaceum associated virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_018585475.1 |
| Isolate |
Reunion |
| Release date |
2021/6/1 |
| Submitter |
Claverie,S., Ouattara,A., Hoarau,M., Filloux,D., Varsani,A., Roumagnac,P., Martin,D.P., Lett,J.M., Lefeuvre,P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCTCATCTCCGCCAACCCCGAGCCGCCACGTGTGCGCTCTACGTGGCGGCGAGGGCCCGGCTTGTTATTCTCTAAAGTAGTAGTTCCGACGTCGTTATCGAAAGTTATGTATGACAGACGGGTTTCCCGCCATTATTAAAGCAGGGTTATCTCCTAGTCAGAAACGCATGGAGAGGGGTCCATTACCTCAAAGCGAGGTAACCTCATCGGTCCCATCTCTTAGACCCGAATCCTCCGTCGGTAACGACGGCGCCTGGCGTTTCTTGGTCTTACTGTTTACGTGCAGTGTTGTTACCCTTGCAGCAATTTATTTTCTCTGGAGGTATCTCCTCAAGGACGTCTGCCTGACGTATAAGGCCAAGCGGAGCAGGACGGTGACCGAGATAGGATTCGGCCAGACGCCTGACAACAGGCGCCAAGTCAACCCTGGACCTGTTCCTCAGGGCCCAATCGGGTAATTACAGAGGCAGTGTTACCCATTTCACAGGTGATTCCAGGCCCCGTTGGCCCTCTCCTCCGCCGCCAGCGGAGGCGCCGGCTCCGGTACCCATGCCGGCGAGAACTGGTAGCCGTCGTAGACCTAGGTCCGATTGGGGATGGGATTCGAGATCTCGTCGTAGGGTCCGTCCTAGGACTAACTACGTGCCCAGGGGACCTCGGGTCAGCAGACCTTCTCTGCAGGTGGATCAGGATTCGTTCTCAGGAAACTCTGTGATTGCTGTGCCCTATACGGATGGTGTTGTGGGCCTCATGACGAACTTCACCCGAGGGTCCGAGGAGTCTTCTCGGCACACGAGCGAGACTATATTATACAAGGTATCCCTGGATTTCTACATCACTGTCGATGCGGCTTTTCAGAAGTATTCTGGAAAGAGTGTTAATGTATGTTGGCTCGTGTACGATGCGCAACCTTCCTCAGCTCAGCCGTCTTGCAAATCTATATTTGCTTACGATGCGAACCTGGCGACTCAGCCACTCACGTGGAAGGTCGGAAGGGAGGTGTGTCATCGTTTTGTCGTCAAGCGACGGTGGGTCTTCACTCTTGAGACGAATGGATATGTGGCGGGCACTGACCTTACAGGTAAGGCGGCGGTACCGCCTTGTAATAGGTCAATTTACTTCCACAAATTCTGCAAACGGTTAGGATGCAGAACCGAGTGGAAGAATACTGCAGGTGGTGGTCTTGGCGACATTAAGACTGGAGCTATGTATTTAGCATTCGCATCTGGCAACCAGATGTCGTTTACCGTAGGAGGTACTATAAGAAAGTATTTCAAATCCGTAGGAAATCAGTAGAGAATACTTGTAAGACATGTACAATATGCAATAAAACGGCAGTTTTATTCATTACAATACAGGTGGCGTTATCGCTACAATGAAATTCCCCATTTTGATACTAAGGGCGGCGGGGAAAGAGCGGTGGCGGCTATGGGCGCTGCAAGGGGTATAACATTAAAAAAAAAACAGACAATAGAATCATTCCGTCAGCTGTTCTCCTTCTGACGGGTCGTTCGCTATGAACGTGTCTCCTTCGTACATGTAGTAGGTTATACAGTTGCTGTCAAAGTATGACAGCTGCTCTGGCGTCATGTGTTTGATCCAGTCTTCATCAGGATTCGTTAGTACGATGGTAGGGATGCCTCCTTTGATGCGTCTTCGCTTCATGTACTTCGGATTGACTTGAAAGTTTTTCTGGCATCCAATCAAACACTTCCAGGCAGGACAGAATTTGAACGGAATATCATCTATTACATTATACAGGGCCTCGGAGTCGTACTCCGAGAAATCGACTCCGTTCATATAGTAGTTGTGCCGTCCCAAGCTGCGTGCCCAGCTGGATTTCCCTGTCCTGCTGGGTCCACATATGTAGAGGGACATGGGTCGCGACTGCCCACGGAATGCACACAGTTATGCATCCAGAGGAGGTCTCCCTCAGCATCTACGTTAGGGTGTAGAAGGGAATATACCTCGGGAGTAACCTGGTAGATGTTCTGACCGAGCCAGTCTGTGATTGTTTCGTTGCAGCGAAACGCTGAGTCAGGAAACGGCGAGACGTATTGCTCTACCGGGTCCGGAAACAGCTTGCTAGCAGCGTATTCCCAGTTCTGAAGACGGACGCAGTACTCATAGGGGAAATGCTTCTTGACGCCGTTGAGGTACTCAGCCCTTGAGGTCGACGACTGCAGCAGGGTCTTCATTACGCCGTCCTTTGTGGTTCGTCCTCTTCGTCTGTCCACGTGTGTCCCCAGCCTTCCTCGGGAGCCCGAGGAATTTCGGCTGGGACCACCGTGCCCATTGCTTCCTGAAGCTGAAGAATCAGACCAATGTACTCCAGGTTGAGCTCTGCCAACCTGGCGTGCTGAGCGGGACCGAAAGGTTCCCCAATAGAACTCTCCTGTAGGCGATTTAGTAATATAAGCAAGCACAGTTTTTGGGTTTCGAGGGATTTGGATATTAGGATGATGGCCTTCCAAATCAAAAAAACCGACATCACGTGTGCACATGCGTTGATTGCTTTGAGCAAGCACATGGAGATGCGGGGTCCCATCCAGATGAAGCTCACTGCAAATACAGAGAAAATTAAGACCGAGAGGTGCAAGACGGTTGTGAAGTTCTGTTCCAGCAATGTCCGCAGGGATCGGACAGCGTGGATAGGTGAGGAAGACATTTTTGTTCTGGATGATGAACTGCCTACTAGGACCAGAGGCTTCAGTGTTGCTCATAGAGTCTCTCAACACTTAGCCGCAAAACGGGGTCTCTCAAACTCTACTCCTCTTACGGCTCATCGACACCAACGACGCAGGCGTATTTATAGCGTCGGATTTTCGTACGAACGGCAGCGATTCGGTGTTGGCGGAGATGAGCGCGGAGCTTAATATT
Gene Information
|
NCBI Accession
|
YP_010087741.1
|
|
Location
|
112-459 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGACAGACGGGTTTCCCGCCATTATTAAAGCAGGGTTATCTCCTAGTCAGAAACGCATGGAGAGGGGTCCATTACCTCAAAGCGAGGTAACCTCATCGGTCCCATCTCTTAGACCCGAATCCTCCGTCGGTAACGACGGCGCCTGGCGTTTCTTGGTCTTACTGTTTACGTGCAGTGTTGTTACCCTTGCAGCAATTTATTTTCTCTGGAGGTATCTCCTCAAGGACGTCTGCCTGACGTATAAGGCCAAGCGGAGCAGGACGGTGACCGAGATAGGATTCGGCCAGACGCCTGACAACAGGCGCCAAGTCAACCCTGGACCTGTTCCTCAGGGCCCAATCGGGTAA |
|
Protein Sequence
|
MTDGFPAIIKAGLSPSQKRMERGPLPQSEVTSSVPSLRPESSVGNDGAWRFLVLLFTCSVVTLAAIYFLWRYLLKDVCLTYKAKRSRTVTEIGFGQTPDNRRQVNPGPVPQGPIG |
|
NCBI Accession
|
YP_010087742.1
|
|
Location
|
551-1297 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGCCGGCGAGAACTGGTAGCCGTCGTAGACCTAGGTCCGATTGGGGATGGGATTCGAGATCTCGTCGTAGGGTCCGTCCTAGGACTAACTACGTGCCCAGGGGACCTCGGGTCAGCAGACCTTCTCTGCAGGTGGATCAGGATTCGTTCTCAGGAAACTCTGTGATTGCTGTGCCCTATACGGATGGTGTTGTGGGCCTCATGACGAACTTCACCCGAGGGTCCGAGGAGTCTTCTCGGCACACGAGCGAGACTATATTATACAAGGTATCCCTGGATTTCTACATCACTGTCGATGCGGCTTTTCAGAAGTATTCTGGAAAGAGTGTTAATGTATGTTGGCTCGTGTACGATGCGCAACCTTCCTCAGCTCAGCCGTCTTGCAAATCTATATTTGCTTACGATGCGAACCTGGCGACTCAGCCACTCACGTGGAAGGTCGGAAGGGAGGTGTGTCATCGTTTTGTCGTCAAGCGACGGTGGGTCTTCACTCTTGAGACGAATGGATATGTGGCGGGCACTGACCTTACAGGTAAGGCGGCGGTACCGCCTTGTAATAGGTCAATTTACTTCCACAAATTCTGCAAACGGTTAGGATGCAGAACCGAGTGGAAGAATACTGCAGGTGGTGGTCTTGGCGACATTAAGACTGGAGCTATGTATTTAGCATTCGCATCTGGCAACCAGATGTCGTTTACCGTAGGAGGTACTATAAGAAAGTATTTCAAATCCGTAGGAAATCAGTAG |
|
Protein Sequence
|
MPARTGSRRRPRSDWGWDSRSRRRVRPRTNYVPRGPRVSRPSLQVDQDSFSGNSVIAVPYTDGVVGLMTNFTRGSEESSRHTSETILYKVSLDFYITVDAAFQKYSGKSVNVCWLVYDAQPSSAQPSCKSIFAYDANLATQPLTWKVGREVCHRFVVKRRWVFTLETNGYVAGTDLTGKAAVPPCNRSIYFHKFCKRLGCRTEWKNTAGGGLGDIKTGAMYLAFASGNQMSFTVGGTIRKYFKSVGNQ |
|
NCBI Accession
|
YP_010087743.1
|
|
Location
|
1798-2724 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGAGCAACACTGAAGCCTCTGGTCCTAGTAGGCAGTTCATCATCCAGAACAAAAATGTCTTCCTCACCTATCCACGCTGTCCGATCCCTGCGGACATTGCTGGAACAGAACTTCACAACCGTCTTGCACCTCTCGGTCTTAATTTTCTCTGTATTTGCAGTGAGCTTCATCTGGATGGGACCCCGCATCTCCATGTGCTTGCTCAAAGCAATCAACGCATGTGCACACGTGATGTCGGTTTTTTTGATTTGGAAGGCCATCATCCTAATATCCAAATCCCTCGAAACCCAAAAACTGTGCTTGCTTATATTACTAAATCGCCTACAGGAGAGTTCTATTGGGGAACCTTTCGGTCCCGCTCAGCACGCCAGGTTGGCAGAGCTCAACCTGGAGTACATTGGTCTGATTCTTCAGCTTCAGGAAGCAATGGGCACGGTGGTCCCAGCCGAAATTCCTCGGGCTCCCGAGGAAGGCTGGGGACACACGTGGACAGACGAAGAGGACGAACCACAAAGGACGGCGTAATGAAGACCCTGCTGCAGTCGTCGACCTCAAGGGCTGAGTACCTCAACGGCGTCAAGAAGCATTTCCCCTATGAGTACTGCGTCCGTCTTCAGAACTGGGAATACGCTGCTAGCAAGCTGTTTCCGGACCCGGTAGAGCAATACGTCTCGCCGTTTCCTGACTCAGCGTTTCGCTGCAACGAAACAATCACAGACTGGCTCGGTCAGAACATCTACCAGGTTACTCCCGAGGTATATTCCCTTCTACACCCTAACGTAGATGCTGAGGGAGACCTCCTCTGGATGCATAACTGTGTGCATTCCGTGGGCAGTCGCGACCCATGTCCCTCTACATATGTGGACCCAGCAGGACAGGGAAATCCAGCTGGGCACGCAGCTTGGGACGGCACAACTACTATATGA |
|
Protein Sequence
|
MSNTEASGPSRQFIIQNKNVFLTYPRCPIPADIAGTELHNRLAPLGLNFLCICSELHLDGTPHLHVLAQSNQRMCTRDVGFFDLEGHHPNIQIPRNPKTVLAYITKSPTGEFYWGTFRSRSARQVGRAQPGVHWSDSSASGSNGHGGPSRNSSGSRGRLGTHVDRRRGRTTKDGVMKTLLQSSTSRAEYLNGVKKHFPYEYCVRLQNWEYAASKLFPDPVEQYVSPFPDSAFRCNETITDWLGQNIYQVTPEVYSLLHPNVDAEGDLLWMHNCVHSVGSRDPCPSTYVDPAGQGNPAGHAAWDGTTTI |