Saccharum streak virus
Basic Information
Genus |
Mastrevirus
|
NCBI Assembly |
GCF_000886895.1 |
Isolate |
South Africa: KwaZulu-Natal |
Release date |
2015/2/22 |
Submitter |
Lawry,R., Martin,D.P., Shepherd,D.N., van Antwerpen,T., Varsani,A. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGCATCCCCTTTTGCGAGGGCCCCAAAGGCCCGAGCGGTCCTAGCCGCTTTGTCTCTGTGGGGTATTTCGAAGATGAAATCTGCTCTTTCGACCGCCGACAGGCTAAGGTGCGATATAAATCAGCCGTCCTCGCCTTGCTTTGAACATGGAGGGCGCCTACGGTGCGATCTATCCTTCCGCGCAGAGTGCTTTGCCGCGGGTACCCATTGCAGCTCCGTCCTCTCCGAGCTTGCCGTGGAGTCGCGTCGGTGAGATAGCTATCTTTGTCTTTGTTGCAGTACTAAGCTTTTATCTGCTGTGGGTGTGGGTGCTGAGAGATCTTATCTTCGTTGTGAAGGCTCGCCGAGGGCACTCAACGGAGGAGCTGCGCTTTGGCCCTACCGTTCAAGCCCCTCCCGTCGCGCCAGTGTCTGTTCCTGGTGCGTCCGCTGTCACTGCTAGCTGTCCACCGGAGCCTAGACCTTTCTGTGTCTAGGCGGGCCATCAGCTATGTCTTCTTCCCTTGGCAAGAGGAAGAGGTCGAATGGAGGCGATTGGTCTAAGCGCTCCGCTAAGAAGAAGCCGGCGGGTACCCCTTCACGCCGTGCTGGGCCTGGAAGAGGCCCACGTCCAGCTCTACAGATTGCGACCTACCAGGCCGCTGGAACCTCTATGGTTACTGTCCCTAGCGGGGGCGTTTGTGAACTCCTTGCGACATATGCTCGAGGGTCCGACGAGGGCAACCGTCACACCAACGAGACTATCACGTACAAGGTTGCCTTGGACTACCACTTTGTAGCCTCGTCTGCTGCTTGCAGGTACTCTTCCATCGGTGTGGGGGTCGTGTGGTTGGTGTATGATGCACAGCCCTCCGGCAATGCCCCCCAGGTAACGGATATCTTCCCGCATCCTGATAGTCTGGCCGCGTTCCCGTACACTTGGAAGGTCGGAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAGACGGACGGGCGTATCGGGAGCGATATCCCTCGGTCGACGGATTCTTGGCCGCCCTGCAAGCGGTCTATTTACTTTCACAAGTTTGCCACCGGTCTCGGTGTCAAAACGGAGTGGAAGAATCTCGCTGATGGAGGAGTTGGATCCATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCCGGCAATGGTTTAGAGTTTACGGCGCATGGCAATGCCCGTTTGTACTTTAAGTCTGTTGGAAATCAGTGATTTCCACGAAATAATAAATAAATTTATTTATTACAATGATTGGAATGCGTAGCATTACATTACAGTACATAGTCTGCAGATGTGCAGACCCAAACACACACATACCCAACTCGGCGGTCAGATCGTAGGCGGCTAAGGGGTAGGACTCGAAAAAAACACACGAAAAACATGATATTATTATAATTGCAGCCGCCGGCTTTACGCAGGGGTGAACCACTTCTCCCCGGAGCTCATGATGTAGACTTCGCAGTTTGCCTCCATGTAGTCCCGCTGCGCGGGAGTCATGTCCCGCAGCCAGTCCTCATCTTCGTTGGCGAGGATTACAGCAGGAATGGAGCGTTTAGCGACCTTCTTTTTCTTCCCGTATTTCGGGTTTACAACGTAGTTCTTCTGACAGCCAACGAGCTGCTTCCAGCAAGGACAGTATTTAAAGGGAATGTCATCTATGACATTCAGGACTGCTTCCTCGTCATATGAGGACCAGTCCACGTTATTCTGCCAGTAGTTGTGGCGACCTAGGCTTCTCGCCCAGGTGGATTTGCCGGTCCTTGTTGGACCGACGATGTACAGGCTTCGCGCTCTTCCGGCCTCTTGAGGTTGCTGTGATACAGTTCGTCGAGCCAGACAAGGTCAGAGGTTGCCTGTTCTAAAGAGCAGCCATGAAGAAGAGTATAGTCCTCAGGAGTGACCTGATAGACGTTGAAGTTCAGCCATTCTTCAATGCGCTCGTAGCAGTGGAGGTCGGGTTGTGTTGGTGGATGAGGATTGGTGTAGGGCTCTGCTATCTCAGGGAACAGCTTATTAGCTGAGTACTCGAAGTACTGCAGCTTCGTTGCCCACTCGTACGGTAGCTCCTTCTGAAGCATGGAGAGGTACTCGTGCTTGTTGGTGGAGTGTTGAATGATATCGCGAACGATATCATCCTTTGAGGCGCGAGTGTTAGAGCTCTCACCGATCTGAGGAACGAAGGGCTTCTTCCGTGGAACGAAAGTACCCTTCTCCCACTGACACAATGGGTCCTTGAGTATGTACTCTCTTACCCTGTCTACCGATTTAGCAGACTGGATGTTGGGGTGGTACTCATTTACGTCGAAGAACCGCGGGTCTGAAGTCGTCACGGGGCGGACGCTCTGTGCCAGGGCATGGCAGTGCCATGTCCCATCTTGATGAGCTTCTCTAGCCACCAGGATGTATGCCGGAGTCCATGGAGCTAGCTTGCTCCATAGGCTCAGACCCAAGATCTCGGGATCAAGGCTACACTTGCTGTAGGTTAGGAAGGTGTTTGCGTTCCTGTGCCTGAAGGAACGAGAGCTGTTACTCTCAGTGCTAGTGCTGTTAGCGTAGGCCATCGGACGGCTGTGGTTGTGCTTTGAGATCCGAGGTTTCTCAAAACTCTAGCTAGACTTCGCATCGAAATCCGCCAGCACCCGGGCGGCTTTTATAGCTGTCTTATATGGGCTGGGCCGAAAGGCCGGCCGGCATACAAAAGGGGATGCGAAGA
Gene Information
NCBI Accession
|
YP_003288766.1
|
Location
|
156-485 |
Protein Name
|
movement protein |
Coding Region
|
ATGGAGGGCGCCTACGGTGCGATCTATCCTTCCGCGCAGAGTGCTTTGCCGCGGGTACCCATTGCAGCTCCGTCCTCTCCGAGCTTGCCGTGGAGTCGCGTCGGTGAGATAGCTATCTTTGTCTTTGTTGCAGTACTAAGCTTTTATCTGCTGTGGGTGTGGGTGCTGAGAGATCTTATCTTCGTTGTGAAGGCTCGCCGAGGGCACTCAACGGAGGAGCTGCGCTTTGGCCCTACCGTTCAAGCCCCTCCCGTCGCGCCAGTGTCTGTTCCTGGTGCGTCCGCTGTCACTGCTAGCTGTCCACCGGAGCCTAGACCTTTCTGTGTCTAG |
Protein Sequence
|
MEGAYGAIYPSAQSALPRVPIAAPSSPSLPWSRVGEIAIFVFVAVLSFYLLWVWVLRDLIFVVKARRGHSTEELRFGPTVQAPPVAPVSVPGASAVTASCPPEPRPFCV |
NCBI Accession
|
YP_003288767.1
|
Location
|
500-1243 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCTTCTTCCCTTGGCAAGAGGAAGAGGTCGAATGGAGGCGATTGGTCTAAGCGCTCCGCTAAGAAGAAGCCGGCGGGTACCCCTTCACGCCGTGCTGGGCCTGGAAGAGGCCCACGTCCAGCTCTACAGATTGCGACCTACCAGGCCGCTGGAACCTCTATGGTTACTGTCCCTAGCGGGGGCGTTTGTGAACTCCTTGCGACATATGCTCGAGGGTCCGACGAGGGCAACCGTCACACCAACGAGACTATCACGTACAAGGTTGCCTTGGACTACCACTTTGTAGCCTCGTCTGCTGCTTGCAGGTACTCTTCCATCGGTGTGGGGGTCGTGTGGTTGGTGTATGATGCACAGCCCTCCGGCAATGCCCCCCAGGTAACGGATATCTTCCCGCATCCTGATAGTCTGGCCGCGTTCCCGTACACTTGGAAGGTCGGAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAGACGGACGGGCGTATCGGGAGCGATATCCCTCGGTCGACGGATTCTTGGCCGCCCTGCAAGCGGTCTATTTACTTTCACAAGTTTGCCACCGGTCTCGGTGTCAAAACGGAGTGGAAGAATCTCGCTGATGGAGGAGTTGGATCCATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCCGGCAATGGTTTAGAGTTTACGGCGCATGGCAATGCCCGTTTGTACTTTAAGTCTGTTGGAAATCAGTGA |
Protein Sequence
|
MSSSLGKRKRSNGGDWSKRSAKKKPAGTPSRRAGPGRGPRPALQIATYQAAGTSMVTVPSGGVCELLATYARGSDEGNRHTNETITYKVALDYHFVASSAACRYSSIGVGVVWLVYDAQPSGNAPQVTDIFPHPDSLAAFPYTWKVGREVCHRFVVKRRWTFTMETDGRIGSDIPRSTDSWPPCKRSIYFHKFATGLGVKTEWKNLADGGVGSIKKGALYIVIAPGNGLEFTAHGNARLYFKSVGNQ |
NCBI Accession
|
YP_003288768.1
|
Location
|
1442-1844,1931-2592 |
Protein Name
|
RepA |
Coding Region
|
ATGGCCTACGCTAACAGCACTAGCACTGAGAGTAACAGCTCTCGTTCCTTCAGGCACAGGAACGCAAACACCTTCCTAACCTACAGCAAGTGTAGCCTTGATCCCGAGATCTTGGGTCTGAGCCTATGGAGCAAGCTAGCTCCATGGACTCCGGCATACATCCTGGTGGCTAGAGAAGCTCATCAAGATGGGACATGGCACTGCCATGCCCTGGCACAGAGCGTCCGCCCCGTGACGACTTCAGACCCGCGGTTCTTCGACGTAAATGAGTACCACCCCAACATCCAGTCTGCTAAATCGGTAGACAGGGTAAGAGAGTACATACTCAAGGACCCATTGTGTCAGTGGGAGAAGGGTACTTTCGTTCCACGGAAGAAGCCCTTCGTTCCTCAGATCGGTGAGAGCTCTAACACTCGCGCCTCAAAGGATGATATCGTTCGCGATATCATTCAACACTCCACCAACAAGCACGAGTACCTCTCCATGCTTCAGAAGGAGCTACCGTACGAGTGGGCAACGAAGCTGCAGTACTTCGAGTACTCAGCTAATAAGCTGTTCCCTGAGATAGCAGAGCCCTACACCAATCCTCATCCACCAACACAACCCGACCTCCACTGCTACGAGCGCATTGAAGAATGGCTGAACTTCAACGTCTATCAGGTGCAACCTCAAGAGGCCGGAAGAGCGCGAAGCCTGTACATCGTCGGTCCAACAAGGACCGGCAAATCCACCTGGGCGAGAAGCCTAGGTCGCCACAACTACTGGCAGAATAACGTGGACTGGTCCTCATATGACGAGGAAGCAGTCCTGAATGTCATAGATGACATTCCCTTTAAATACTGTCCTTGCTGGAAGCAGCTCGTTGGCTGTCAGAAGAACTACGTTGTAAACCCGAAATACGGGAAGAAAAAGAAGGTCGCTAAACGCTCCATTCCTGCTGTAATCCTCGCCAACGAAGATGAGGACTGGCTGCGGGACATGACTCCCGCGCAGCGGGACTACATGGAGGCAAACTGCGAAGTCTACATCATGAGCTCCGGGGAGAAGTGGTTCACCCCTGCGTAA |
Protein Sequence
|
MAYANSTSTESNSSRSFRHRNANTFLTYSKCSLDPEILGLSLWSKLAPWTPAYILVAREAHQDGTWHCHALAQSVRPVTTSDPRFFDVNEYHPNIQSAKSVDRVREYILKDPLCQWEKGTFVPRKKPFVPQIGESSNTRASKDDIVRDIIQHSTNKHEYLSMLQKELPYEWATKLQYFEYSANKLFPEIAEPYTNPHPPTQPDLHCYERIEEWLNFNVYQVQPQEAGRARSLYIVGPTRTGKSTWARSLGRHNYWQNNVDWSSYDEEAVLNVIDDIPFKYCPCWKQLVGCQKNYVVNPKYGKKKKVAKRSIPAVILANEDEDWLRDMTPAQRDYMEANCEVYIMSSGEKWFTPA |