Saccharum streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000886895.1
Isolate South Africa: KwaZulu-Natal
Release date 2015/2/22
Submitter Lawry,R., Martin,D.P., Shepherd,D.N., van Antwerpen,T., Varsani,A.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_013464
TAATATTACCGCATCCCCTTTTGCGAGGGCCCCAAAGGCCCGAGCGGTCCTAGCCGCTTTGTCTCTGTGGGGTATTTCGAAGATGAAATCTGCTCTTTCGACCGCCGACAGGCTAAGGTGCGATATAAATCAGCCGTCCTCGCCTTGCTTTGAACATGGAGGGCGCCTACGGTGCGATCTATCCTTCCGCGCAGAGTGCTTTGCCGCGGGTACCCATTGCAGCTCCGTCCTCTCCGAGCTTGCCGTGGAGTCGCGTCGGTGAGATAGCTATCTTTGTCTTTGTTGCAGTACTAAGCTTTTATCTGCTGTGGGTGTGGGTGCTGAGAGATCTTATCTTCGTTGTGAAGGCTCGCCGAGGGCACTCAACGGAGGAGCTGCGCTTTGGCCCTACCGTTCAAGCCCCTCCCGTCGCGCCAGTGTCTGTTCCTGGTGCGTCCGCTGTCACTGCTAGCTGTCCACCGGAGCCTAGACCTTTCTGTGTCTAGGCGGGCCATCAGCTATGTCTTCTTCCCTTGGCAAGAGGAAGAGGTCGAATGGAGGCGATTGGTCTAAGCGCTCCGCTAAGAAGAAGCCGGCGGGTACCCCTTCACGCCGTGCTGGGCCTGGAAGAGGCCCACGTCCAGCTCTACAGATTGCGACCTACCAGGCCGCTGGAACCTCTATGGTTACTGTCCCTAGCGGGGGCGTTTGTGAACTCCTTGCGACATATGCTCGAGGGTCCGACGAGGGCAACCGTCACACCAACGAGACTATCACGTACAAGGTTGCCTTGGACTACCACTTTGTAGCCTCGTCTGCTGCTTGCAGGTACTCTTCCATCGGTGTGGGGGTCGTGTGGTTGGTGTATGATGCACAGCCCTCCGGCAATGCCCCCCAGGTAACGGATATCTTCCCGCATCCTGATAGTCTGGCCGCGTTCCCGTACACTTGGAAGGTCGGAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAGACGGACGGGCGTATCGGGAGCGATATCCCTCGGTCGACGGATTCTTGGCCGCCCTGCAAGCGGTCTATTTACTTTCACAAGTTTGCCACCGGTCTCGGTGTCAAAACGGAGTGGAAGAATCTCGCTGATGGAGGAGTTGGATCCATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCCGGCAATGGTTTAGAGTTTACGGCGCATGGCAATGCCCGTTTGTACTTTAAGTCTGTTGGAAATCAGTGATTTCCACGAAATAATAAATAAATTTATTTATTACAATGATTGGAATGCGTAGCATTACATTACAGTACATAGTCTGCAGATGTGCAGACCCAAACACACACATACCCAACTCGGCGGTCAGATCGTAGGCGGCTAAGGGGTAGGACTCGAAAAAAACACACGAAAAACATGATATTATTATAATTGCAGCCGCCGGCTTTACGCAGGGGTGAACCACTTCTCCCCGGAGCTCATGATGTAGACTTCGCAGTTTGCCTCCATGTAGTCCCGCTGCGCGGGAGTCATGTCCCGCAGCCAGTCCTCATCTTCGTTGGCGAGGATTACAGCAGGAATGGAGCGTTTAGCGACCTTCTTTTTCTTCCCGTATTTCGGGTTTACAACGTAGTTCTTCTGACAGCCAACGAGCTGCTTCCAGCAAGGACAGTATTTAAAGGGAATGTCATCTATGACATTCAGGACTGCTTCCTCGTCATATGAGGACCAGTCCACGTTATTCTGCCAGTAGTTGTGGCGACCTAGGCTTCTCGCCCAGGTGGATTTGCCGGTCCTTGTTGGACCGACGATGTACAGGCTTCGCGCTCTTCCGGCCTCTTGAGGTTGCTGTGATACAGTTCGTCGAGCCAGACAAGGTCAGAGGTTGCCTGTTCTAAAGAGCAGCCATGAAGAAGAGTATAGTCCTCAGGAGTGACCTGATAGACGTTGAAGTTCAGCCATTCTTCAATGCGCTCGTAGCAGTGGAGGTCGGGTTGTGTTGGTGGATGAGGATTGGTGTAGGGCTCTGCTATCTCAGGGAACAGCTTATTAGCTGAGTACTCGAAGTACTGCAGCTTCGTTGCCCACTCGTACGGTAGCTCCTTCTGAAGCATGGAGAGGTACTCGTGCTTGTTGGTGGAGTGTTGAATGATATCGCGAACGATATCATCCTTTGAGGCGCGAGTGTTAGAGCTCTCACCGATCTGAGGAACGAAGGGCTTCTTCCGTGGAACGAAAGTACCCTTCTCCCACTGACACAATGGGTCCTTGAGTATGTACTCTCTTACCCTGTCTACCGATTTAGCAGACTGGATGTTGGGGTGGTACTCATTTACGTCGAAGAACCGCGGGTCTGAAGTCGTCACGGGGCGGACGCTCTGTGCCAGGGCATGGCAGTGCCATGTCCCATCTTGATGAGCTTCTCTAGCCACCAGGATGTATGCCGGAGTCCATGGAGCTAGCTTGCTCCATAGGCTCAGACCCAAGATCTCGGGATCAAGGCTACACTTGCTGTAGGTTAGGAAGGTGTTTGCGTTCCTGTGCCTGAAGGAACGAGAGCTGTTACTCTCAGTGCTAGTGCTGTTAGCGTAGGCCATCGGACGGCTGTGGTTGTGCTTTGAGATCCGAGGTTTCTCAAAACTCTAGCTAGACTTCGCATCGAAATCCGCCAGCACCCGGGCGGCTTTTATAGCTGTCTTATATGGGCTGGGCCGAAAGGCCGGCCGGCATACAAAAGGGGATGCGAAGA

Gene Information

NCBI Accession YP_003288766.1
Location 156-485
Protein Name movement protein
Coding Region ATGGAGGGCGCCTACGGTGCGATCTATCCTTCCGCGCAGAGTGCTTTGCCGCGGGTACCCATTGCAGCTCCGTCCTCTCCGAGCTTGCCGTGGAGTCGCGTCGGTGAGATAGCTATCTTTGTCTTTGTTGCAGTACTAAGCTTTTATCTGCTGTGGGTGTGGGTGCTGAGAGATCTTATCTTCGTTGTGAAGGCTCGCCGAGGGCACTCAACGGAGGAGCTGCGCTTTGGCCCTACCGTTCAAGCCCCTCCCGTCGCGCCAGTGTCTGTTCCTGGTGCGTCCGCTGTCACTGCTAGCTGTCCACCGGAGCCTAGACCTTTCTGTGTCTAG
Protein Sequence MEGAYGAIYPSAQSALPRVPIAAPSSPSLPWSRVGEIAIFVFVAVLSFYLLWVWVLRDLIFVVKARRGHSTEELRFGPTVQAPPVAPVSVPGASAVTASCPPEPRPFCV

NCBI Accession YP_003288767.1
Location 500-1243
Protein Name coat protein
Coding Region ATGTCTTCTTCCCTTGGCAAGAGGAAGAGGTCGAATGGAGGCGATTGGTCTAAGCGCTCCGCTAAGAAGAAGCCGGCGGGTACCCCTTCACGCCGTGCTGGGCCTGGAAGAGGCCCACGTCCAGCTCTACAGATTGCGACCTACCAGGCCGCTGGAACCTCTATGGTTACTGTCCCTAGCGGGGGCGTTTGTGAACTCCTTGCGACATATGCTCGAGGGTCCGACGAGGGCAACCGTCACACCAACGAGACTATCACGTACAAGGTTGCCTTGGACTACCACTTTGTAGCCTCGTCTGCTGCTTGCAGGTACTCTTCCATCGGTGTGGGGGTCGTGTGGTTGGTGTATGATGCACAGCCCTCCGGCAATGCCCCCCAGGTAACGGATATCTTCCCGCATCCTGATAGTCTGGCCGCGTTCCCGTACACTTGGAAGGTCGGAAGGGAGGTGTGTCATCGCTTCGTGGTGAAGCGGAGGTGGACTTTCACGATGGAGACGGACGGGCGTATCGGGAGCGATATCCCTCGGTCGACGGATTCTTGGCCGCCCTGCAAGCGGTCTATTTACTTTCACAAGTTTGCCACCGGTCTCGGTGTCAAAACGGAGTGGAAGAATCTCGCTGATGGAGGAGTTGGATCCATTAAGAAGGGTGCCCTGTATATTGTAATTGCCCCCGGCAATGGTTTAGAGTTTACGGCGCATGGCAATGCCCGTTTGTACTTTAAGTCTGTTGGAAATCAGTGA
Protein Sequence MSSSLGKRKRSNGGDWSKRSAKKKPAGTPSRRAGPGRGPRPALQIATYQAAGTSMVTVPSGGVCELLATYARGSDEGNRHTNETITYKVALDYHFVASSAACRYSSIGVGVVWLVYDAQPSGNAPQVTDIFPHPDSLAAFPYTWKVGREVCHRFVVKRRWTFTMETDGRIGSDIPRSTDSWPPCKRSIYFHKFATGLGVKTEWKNLADGGVGSIKKGALYIVIAPGNGLEFTAHGNARLYFKSVGNQ

NCBI Accession YP_003288768.1
Location 1442-1844,1931-2592
Protein Name RepA
Coding Region ATGGCCTACGCTAACAGCACTAGCACTGAGAGTAACAGCTCTCGTTCCTTCAGGCACAGGAACGCAAACACCTTCCTAACCTACAGCAAGTGTAGCCTTGATCCCGAGATCTTGGGTCTGAGCCTATGGAGCAAGCTAGCTCCATGGACTCCGGCATACATCCTGGTGGCTAGAGAAGCTCATCAAGATGGGACATGGCACTGCCATGCCCTGGCACAGAGCGTCCGCCCCGTGACGACTTCAGACCCGCGGTTCTTCGACGTAAATGAGTACCACCCCAACATCCAGTCTGCTAAATCGGTAGACAGGGTAAGAGAGTACATACTCAAGGACCCATTGTGTCAGTGGGAGAAGGGTACTTTCGTTCCACGGAAGAAGCCCTTCGTTCCTCAGATCGGTGAGAGCTCTAACACTCGCGCCTCAAAGGATGATATCGTTCGCGATATCATTCAACACTCCACCAACAAGCACGAGTACCTCTCCATGCTTCAGAAGGAGCTACCGTACGAGTGGGCAACGAAGCTGCAGTACTTCGAGTACTCAGCTAATAAGCTGTTCCCTGAGATAGCAGAGCCCTACACCAATCCTCATCCACCAACACAACCCGACCTCCACTGCTACGAGCGCATTGAAGAATGGCTGAACTTCAACGTCTATCAGGTGCAACCTCAAGAGGCCGGAAGAGCGCGAAGCCTGTACATCGTCGGTCCAACAAGGACCGGCAAATCCACCTGGGCGAGAAGCCTAGGTCGCCACAACTACTGGCAGAATAACGTGGACTGGTCCTCATATGACGAGGAAGCAGTCCTGAATGTCATAGATGACATTCCCTTTAAATACTGTCCTTGCTGGAAGCAGCTCGTTGGCTGTCAGAAGAACTACGTTGTAAACCCGAAATACGGGAAGAAAAAGAAGGTCGCTAAACGCTCCATTCCTGCTGTAATCCTCGCCAACGAAGATGAGGACTGGCTGCGGGACATGACTCCCGCGCAGCGGGACTACATGGAGGCAAACTGCGAAGTCTACATCATGAGCTCCGGGGAGAAGTGGTTCACCCCTGCGTAA
Protein Sequence MAYANSTSTESNSSRSFRHRNANTFLTYSKCSLDPEILGLSLWSKLAPWTPAYILVAREAHQDGTWHCHALAQSVRPVTTSDPRFFDVNEYHPNIQSAKSVDRVREYILKDPLCQWEKGTFVPRKKPFVPQIGESSNTRASKDDIVRDIIQHSTNKHEYLSMLQKELPYEWATKLQYFEYSANKLFPEIAEPYTNPHPPTQPDLHCYERIEEWLNFNVYQVQPQEAGRARSLYIVGPTRTGKSTWARSLGRHNYWQNNVDWSSYDEEAVLNVIDDIPFKYCPCWKQLVGCQKNYVVNPKYGKKKKVAKRSIPAVILANEDEDWLRDMTPAQRDYMEANCEVYIMSSGEKWFTPA