Paspalum striate mosaic virus
Basic Information
Genus |
Mastrevirus
|
NCBI Assembly |
GCF_000899195.1 |
Isolate |
Australia |
Release date |
2015/2/22 |
Submitter |
Geering,A.D., Thomas,J.E., Holton,T., Hadfield,J., Varsani,A., Geering,A.G. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGGCGGAGTACCCTCAGTCTGCTTTGATTGTTTCTGGTGCGATTCCACGGCGAAGCCAGGACGAGAGCTTTGCCACGTCTTTGAAGGTCACTGCTTTATCTTTATTTGCAGCATTTATTGCTGCTGCAGTCTTGACATTCATTTACAAGACTTGCATTGCGGATTTCATTACGCAATTCCGTTTATCCGGTTTAAGCAGTGTAACTTCATCTGGCTTTGGGCGGACCGCTGAGGTTCCGCCAGCTGTCCCTACAAGGACAGCGTCTGAGGTTTCAATTCCCGTAAGGGAAGCTGTTTCTGCTCCTCCTTTGGTTTCTTCCGTGGTTGGTGTTTAGTTTCCATGGCAGCTTCGTCGAAGAGGAAGCGCGGGAGTACTTCCGCAACCAAGCGGCGCAAGAAGCCGCGGTACACGAAGTGGACCTCTGCCCGCAGCTCTAACAGAGATGCGCTGCAGGTACAGACCTTCACCTGGGGTGAAGATCAGGCGTTCAACGCCGGAGGACGTGCGATACTTCTCACGGCCTTTACGCGTGGTTCTGCCGAGAACCAACGCAAATCCCAGGAGACCATTACATACAAGGTTAGTATTAACCTTGGTGTGTCAGCATCTGCTACCGTCCTCAAGTACTGCTGCAAGAGCCAGCCATTATGCTGGCTCGTATACGATAAGTCCCCGACTGGGATTACGGACCTGACCCCATCAGACATCTTCGATGTGCCCTCGGGGTTACAGAACTGGCCTTCCACCTGGAAGGTCAAACGAGAAGCGTCTCATCGCTTCGTCGTCAAACGGCGTTGGCCGTTCACGTTATCATGCAACGGGAGTACGTTCCAGAAGGACTACACAAACCTGCCTGTCTGTAACACAGACAACCTGGTGTCTGTAACGAGGTTCGCCAAGGGACTTGGAGTGCGAACGGAGTGGAAGGACACAACGACAGCGGACGCGTCGGACATCAAGGGTGGAGCCCTCTACCTTGTGGTAGCCCCCGCTAACGGGCTTGTGTTTACAGCCCGTGGTGTAATCAAAGTCTACTTTAAGTCAGTGGGCAACCAGTAGCCCATTTGTAATGAGCCCATGGGGCGAACTTATGAAATAAAATCTTGCATTTTATTCATCGCATTGAGATGCATGCGTAGCAGCAAAGCAAATTACATAACTGGTTTTGTGGGTCGCGAGGGGGAACCCGGAGCACGCACCCAAAACACTAAATGAAACACACCCAAATAATCTATCTGAAAATGCCGGACGAGGACTCGCGAAGGAGTCCGAGATTACAAAGCTTCGAAGAAGCTTTCACCCGAGTACATGTAATGTACGACTGCGTTAGCATTGAACCAGTCAGCCTGACTAGGCTGCATTTGTTGAAGCCAGTCTTCATCCTCGTTCACGAGGATTATGCATGGAATGCCATTTGACAGCAGCCGTTTCTTGCCATACTTCGGATTTACTGTAATGTCCTTCTGGCTTCCGACAAGCCCTTTCCAACAAGGAACAAATTTAAACGGAATGTCATCTATGACATTATATCTTGCATTTTGAATTACGTGGAGGAAGTCCACGGAATGTTGCCAGTAGTTATGACTTCCGAGACTTCTTGCCCAAGAAGTCTTTCCTGTTCTTGTTGGACCACATATGTAGAGGGAACGTCTTCGTTCAGTAGGACTTCTGTCCTGCTTAGATCAGACATCCATTGGAGGTCAAGCTTTGCTTGTTCCTCCGAAACACCGTTGTGTATGGAATACGCATAAGGACTTACAGTGTATAATTCATCTCGGAGCCATGCTCCGATAACAGGATGTGTATCCTGCGATGGCATCCCGAAGGGATCCACATACGGTGGAGGAGTGGAAGGGAACAGCGATTCAGCTGAGAACTGAAACTGCTGCAACCTTGTTGCCCAGTCGAATGGGAAGGATTTCCTTACCATCGAGAGATAGTCCTCCTTGTTTGTGGAACTTTTAATGATTTCCGCCATTTTTGCATCCTTCGTAGAAGGTGCGTCCGCCTTCTTCTTTCTCGGACGCTTGATTTCCTGAAATACCCCATATTCCGCTTCGGATATTGGGGATTTCTTGCAGTATGATAATGCCTTCTTGGGCATTCTTGGATTTTGAACATTTGGATGAAATTCTTTGATGTCGAAGAATTTTGCACTTGTAGTGCGCACGTATTTTGAGCATTGTATTATACAATGCAGATGGTGAGATCCATCTTTATGTGCCTCTTGTGCCACGTAGATATACGTGGGACAGTATTTCTTCAATAAAGAAGAAATATATTCCAGGAGGAATACAGCCGTGAGGTTGCACTTACTGTATGTGAGGAACAGGTTCCTCGCTCTCACCTTGAAGCATGAAGAGGAGGGGGCGTCGATAGACTGCCCACCCCTTCCTGGGCTCTCCATTTGACTGCCCACTTCACTGTTGCTTGTCTCACTGACAAGTGAGGACATCTCGTCAGAAGCTATCGTGGATAGCTTCAACGCCCTTAGATCTTCTTTGAGATCCGAGGTTTTGAAAAACTCTCTTCCTAGACCGCTGCCGACTGCCGAGTTCTCCCCCCGAAGCCCTTCTTATATGGGCCGGGGGGCATTGCTTTCCGTGTGGGCCGGCCCGGTAAAGAGGCAGCGCAATAATATTACCGCTGCCCTCTTTACCCGAGGGCCCCATGCTCAACGGGGACCGAGGTGGCTTTGCCCGGGCCTTATCAGCCCACTAAGGGCTGTTTCCCGCAATCTGATTTCGTTTTTTGCTTTGACTGACATTTCTGCTTTGGATGCGGCTTTAAATAGCCGCATCGCACTACTACGCC
Gene Information
NCBI Accession
|
YP_006659972.1
|
Location
|
1-336 |
Protein Name
|
movement protein |
Coding Region
|
ATGGCGGAGTACCCTCAGTCTGCTTTGATTGTTTCTGGTGCGATTCCACGGCGAAGCCAGGACGAGAGCTTTGCCACGTCTTTGAAGGTCACTGCTTTATCTTTATTTGCAGCATTTATTGCTGCTGCAGTCTTGACATTCATTTACAAGACTTGCATTGCGGATTTCATTACGCAATTCCGTTTATCCGGTTTAAGCAGTGTAACTTCATCTGGCTTTGGGCGGACCGCTGAGGTTCCGCCAGCTGTCCCTACAAGGACAGCGTCTGAGGTTTCAATTCCCGTAAGGGAAGCTGTTTCTGCTCCTCCTTTGGTTTCTTCCGTGGTTGGTGTTTAG |
Protein Sequence
|
MAEYPQSALIVSGAIPRRSQDESFATSLKVTALSLFAAFIAAAVLTFIYKTCIADFITQFRLSGLSSVTSSGFGRTAEVPPAVPTRTASEVSIPVREAVSAPPLVSSVVGV |
NCBI Accession
|
YP_006659973.1
|
Location
|
342-1061 |
Protein Name
|
coat protein |
Coding Region
|
ATGGCAGCTTCGTCGAAGAGGAAGCGCGGGAGTACTTCCGCAACCAAGCGGCGCAAGAAGCCGCGGTACACGAAGTGGACCTCTGCCCGCAGCTCTAACAGAGATGCGCTGCAGGTACAGACCTTCACCTGGGGTGAAGATCAGGCGTTCAACGCCGGAGGACGTGCGATACTTCTCACGGCCTTTACGCGTGGTTCTGCCGAGAACCAACGCAAATCCCAGGAGACCATTACATACAAGGTTAGTATTAACCTTGGTGTGTCAGCATCTGCTACCGTCCTCAAGTACTGCTGCAAGAGCCAGCCATTATGCTGGCTCGTATACGATAAGTCCCCGACTGGGATTACGGACCTGACCCCATCAGACATCTTCGATGTGCCCTCGGGGTTACAGAACTGGCCTTCCACCTGGAAGGTCAAACGAGAAGCGTCTCATCGCTTCGTCGTCAAACGGCGTTGGCCGTTCACGTTATCATGCAACGGGAGTACGTTCCAGAAGGACTACACAAACCTGCCTGTCTGTAACACAGACAACCTGGTGTCTGTAACGAGGTTCGCCAAGGGACTTGGAGTGCGAACGGAGTGGAAGGACACAACGACAGCGGACGCGTCGGACATCAAGGGTGGAGCCCTCTACCTTGTGGTAGCCCCCGCTAACGGGCTTGTGTTTACAGCCCGTGGTGTAATCAAAGTCTACTTTAAGTCAGTGGGCAACCAGTAG |
Protein Sequence
|
MAASSKRKRGSTSATKRRKKPRYTKWTSARSSNRDALQVQTFTWGEDQAFNAGGRAILLTAFTRGSAENQRKSQETITYKVSINLGVSASATVLKYCCKSQPLCWLVYDKSPTGITDLTPSDIFDVPSGLQNWPSTWKVKREASHRFVVKRRWPFTLSCNGSTFQKDYTNLPVCNTDNLVSVTRFAKGLGVRTEWKDTTTADASDIKGGALYLVVAPANGLVFTARGVIKVYFKSVGNQ |
NCBI Accession
|
YP_006659974.1
|
Location
|
1277-1675,1762-2457 |
Protein Name
|
Rep |
Coding Region
|
ATGTCCTCACTTGTCAGTGAGACAAGCAACAGTGAAGTGGGCAGTCAAATGGAGAGCCCAGGAAGGGGTGGGCAGTCTATCGACGCCCCCTCCTCTTCATGCTTCAAGGTGAGAGCGAGGAACCTGTTCCTCACATACAGTAAGTGCAACCTCACGGCTGTATTCCTCCTGGAATATATTTCTTCTTTATTGAAGAAATACTGTCCCACGTATATCTACGTGGCACAAGAGGCACATAAAGATGGATCTCACCATCTGCATTGTATAATACAATGCTCAAAATACGTGCGCACTACAAGTGCAAAATTCTTCGACATCAAAGAATTTCATCCAAATGTTCAAAATCCAAGAATGCCCAAGAAGGCATTATCATACTGCAAGAAATCCCCAATATCCGAAGCGGAATATGGGGTATTTCAGGAAATCAAGCGTCCGAGAAAGAAGAAGGCGGACGCACCTTCTACGAAGGATGCAAAAATGGCGGAAATCATTAAAAGTTCCACAAACAAGGAGGACTATCTCTCGATGGTAAGGAAATCCTTCCCATTCGACTGGGCAACAAGGTTGCAGCAGTTTCAGTTCTCAGCTGAATCGCTGTTCCCTTCCACTCCTCCACCGTATGTGGATCCCTTCGGGATGCCATCGCAGGATACACATCCTGTTATCGGAGCATGGCTCCGAGATGAATTATACACTGACAGAAGTCCTACTGAACGAAGACGTTCCCTCTACATATGTGGTCCAACAAGAACAGGAAAGACTTCTTGGGCAAGAAGTCTCGGAAGTCATAACTACTGGCAACATTCCGTGGACTTCCTCCACGTAATTCAAAATGCAAGATATAATGTCATAGATGACATTCCGTTTAAATTTGTTCCTTGTTGGAAAGGGCTTGTCGGAAGCCAGAAGGACATTACAGTAAATCCGAAGTATGGCAAGAAACGGCTGCTGTCAAATGGCATTCCATGCATAATCCTCGTGAACGAGGATGAAGACTGGCTTCAACAAATGCAGCCTAGTCAGGCTGACTGGTTCAATGCTAACGCAGTCGTACATTACATGTACTCGGGTGAAAGCTTCTTCGAAGCTTTGTAA |
Protein Sequence
|
MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLTYSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFFDIKEFHPNVQNPRMPKKALSYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMAEIIKSSTNKEDYLSMVRKSFPFDWATRLQQFQFSAESLFPSTPPPYVDPFGMPSQDTHPVIGAWLRDELYTDRSPTERRRSLYICGPTRTGKTSWARSLGSHNYWQHSVDFLHVIQNARYNVIDDIPFKFVPCWKGLVGSQKDITVNPKYGKKRLLSNGIPCIILVNEDEDWLQQMQPSQADWFNANAVVHYMYSGESFFEAL |
NCBI Accession
|
YP_006659975.1
|
Location
|
1546-2457 |
Protein Name
|
RepA |
Coding Region
|
ATGTCCTCACTTGTCAGTGAGACAAGCAACAGTGAAGTGGGCAGTCAAATGGAGAGCCCAGGAAGGGGTGGGCAGTCTATCGACGCCCCCTCCTCTTCATGCTTCAAGGTGAGAGCGAGGAACCTGTTCCTCACATACAGTAAGTGCAACCTCACGGCTGTATTCCTCCTGGAATATATTTCTTCTTTATTGAAGAAATACTGTCCCACGTATATCTACGTGGCACAAGAGGCACATAAAGATGGATCTCACCATCTGCATTGTATAATACAATGCTCAAAATACGTGCGCACTACAAGTGCAAAATTCTTCGACATCAAAGAATTTCATCCAAATGTTCAAAATCCAAGAATGCCCAAGAAGGCATTATCATACTGCAAGAAATCCCCAATATCCGAAGCGGAATATGGGGTATTTCAGGAAATCAAGCGTCCGAGAAAGAAGAAGGCGGACGCACCTTCTACGAAGGATGCAAAAATGGCGGAAATCATTAAAAGTTCCACAAACAAGGAGGACTATCTCTCGATGGTAAGGAAATCCTTCCCATTCGACTGGGCAACAAGGTTGCAGCAGTTTCAGTTCTCAGCTGAATCGCTGTTCCCTTCCACTCCTCCACCGTATGTGGATCCCTTCGGGATGCCATCGCAGGATACACATCCTGTTATCGGAGCATGGCTCCGAGATGAATTATACACTGTAAGTCCTTATGCGTATTCCATACACAACGGTGTTTCGGAGGAACAAGCAAAGCTTGACCTCCAATGGATGTCTGATCTAAGCAGGACAGAAGTCCTACTGAACGAAGACGTTCCCTCTACATATGTGGTCCAACAAGAACAGGAAAGACTTCTTGGGCAAGAAGTCTCGGAAGTCATAACTACTGGCAACATTCCGTGGACTTCCTCCACGTAA |
Protein Sequence
|
MSSLVSETSNSEVGSQMESPGRGGQSIDAPSSSCFKVRARNLFLTYSKCNLTAVFLLEYISSLLKKYCPTYIYVAQEAHKDGSHHLHCIIQCSKYVRTTSAKFFDIKEFHPNVQNPRMPKKALSYCKKSPISEAEYGVFQEIKRPRKKKADAPSTKDAKMAEIIKSSTNKEDYLSMVRKSFPFDWATRLQQFQFSAESLFPSTPPPYVDPFGMPSQDTHPVIGAWLRDELYTVSPYAYSIHNGVSEEQAKLDLQWMSDLSRTEVLLNEDVPSTYVVQQEQERLLGQEVSEVITTGNIPWTSST |