Panicum streak virus
Basic Information
Genus |
Mastrevirus
|
NCBI Assembly |
GCF_000839585.1 |
Release date |
2015/2/12 |
Submitter |
Schnippenkoetter,W.H., Martin,D.P., Hughes,F.L., Fyvie,M., Willment,J.A., James,D., von Wechmar,M.B., Rybicki,E.P. |
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGCTCACACCCCATGCGAGCCACGGCCCTGTGTGGCGAGCGGTCCCCGGATGTTCTTACCCCGGTGCGATTTCTTTAGCTGCGTGTTCTTTAGCAGCTGCCCCCACTGTCCTATAAGTTGCTCCCCGGTGCGATTCCGCATCATGGATGCTAGCAGCACCACTCCTTTTCCTTTCCCTCAGCCGCCTCGGGTACCCTCTGCAGCTCCGGTCGCCGGAGCGCTGCCGTGGAGTCGCGTCGGTGAGATAGTTATCTTTACCTTTGTTTCAGTGCTAGGCCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATTGTATCTTACTTCTGAAGGCTCAGCGAGGTAGATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAGAGGCCAGCCGTCGCTTCTGCCGACGGTTCTCGCTCCGTTCCAGATCCGTCTCCGTCCTGTCCGCCGGGACCTAGACCTTTCGTGGTCTAGAGCACTCAGCATGTCCGGAGCTTTGAAGCGCAAGCGTTCGGATGAGGTTGCCTGGAGTCGAAGGAAGCCCGTCAAGAAGCAAGACACCGGGTTCCCCCTCCCCCGGGCTGGCCCCTCTGTCAGGAGAGGACTCCCTGCCCTTCAGATCCAGACGCTTACGGCGGCTGGTGACACTATGATCACGGTGCCGTCCGGCGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCTCTGATGAAGGTAACCGCCACACCAACGAGACTCTGACGTACAAGGTTGCGCTGGACTACCACTTCGTTGCTACTGCTGCGGCCTGCAAGTACTCCAGCATTGGAGTGGGTGTCATGTGGTTGGTGTATGATGCGCAGCCGACCGGCAATTCACCGGAGGTGAAGGACATCTTCCCTCACTCCGATACGCTCTCAGCGTTCCCGTACACTTGGAAGGTTGGCAGGGAGGTCTGCCATCGCTTCGTTGTTAAACGGCGCTGGTGCTTCACCATGGAGACTAACGGCCGGATCGGTTCAGATGTGCCTCCGGCCAATACCGCTTGGCCGCCTTGCAAGAAGGACATCTACTTCCACAAGTTCTGCACGGGACTCGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGTCGGCGCTATTAAGAAGGGCGCCTTGTACATTGTCATTGCGCCTGGAAACGGGCTTGAGTTTACGGTTCACGGCCAGTGCCGTCTGTACTTTAAGTCAGTTGGTAATCAGTGATTACCACATCAATTAATAAAACAAGTTTTATTCAAAGAGCGAAGCTCATACATTACATAGTCAGCAGATATGCTGACAGAAAACACACACATAGTGCAGCCTCGGGCTAAAGACCGAGTCTCAAACGACCCAACTTAAAAACAAATCAAAACAAGCATGATATTATTAAATATGCAGCCGCCGGCTTAAGCAGGAGTGAACCACTTCTCTCCTGCCTGCATTACGTAGATTTCGCAGTTTGCGTAGAAGTAGTCATACTGCGCCGGAGTCATGTCCTTCAGCCAGTCCTCATCCTCGTTGGCGAGGATGATAGTTGGTATGCTCTTTGAGGCCACCTTCCGTCTCTTCCCGTACTTCGGGTTCACTATGTAGTCTTTTTGACAGCCGACGAGCTGCTTCCAGCACGGACAGAACTTGAAGGGAATGTCGTCCACGACATTGTACGCAGCTTCTTCATCGTATGAAGACCAGTCGATGTTATTCTGCCAGTAGTTGTGCCGTCCGAGGCTTCTGGCCCAGGATGTTTTACCTGTCCGTGTTGGGCCGACGATGTAGAGGCTTCGCTTTCTTGCTCCTGGAATAATCTGGTTGTTTCAGACAACCATTCTAAGTCAGCTTTGGCTTGCTCTAGGCTTAAGCAGCTAGGTTCAAGGAGCATGTATGCTTTAGGACTGACCTGGTAGATGTTAGGCTCAAGCCAGTCCTGGAGTGTTTCGTTGCAGAGGAGGTCAGGGTCAGTGGCAGGATGAGGATTGCTGTAAGGCTCTGCAATGTCCGGGAACAGGCGACTAGCTGAGTACTCAAAGTATGACAGTTTTGTGGCCCAGTCGTAAGGCAGTGAAGTCTGCACTAGTGAAAGGTACTCTGCTCTGCTAGTGGCATGTGTCATGATCTCCTTCATGACCTCATCCTTAGAAGGCTTCTTCTCAGAGTTTTCCTTACCTGGAGGAACGAAGCTCTTCTTCCTTGGTATGTAAGTACCTTTCTCCCACTTGTCCTTGGGATCCTTCAGTATGTACTCACGTACCTTGTCAGTGCTCTTGGCGCTCTGTATATTCGGATGATACCGATCTATGTCAAAGTACCTCTCGTCACGAGTAGTGACAGGCTTGATGCACTGGAGAAGAGCATGGCAGTGCCATGTTCCGTCTTGGTGAGTCTCTCTCACTACCAGGATGTATGCTGGCTCAAAGTCCTTAGTGAGCCTGAAGAGATGCTCACCGATGAACTCAGGTTCTAGTGGACACTTGCTGTATGTGAGGAAGGTGTTCGCGTTCCGGTGCCTGAAGGACCGGACGCTGTGCCTGCCATCTGAGGTGATAGACAGAGAGGTCGACATTAGCGCAGGAGGTTGGGCAATCTCAGGCTCTCCTCAGCTCTATCCCTAGACAGCTGCGAAATAATCCGCCCACCCCCCGTGCCTTTTATAGCTGCTTGGTGGGCTGGGCCGGCCGGCATGGGGTGTGAGCAGCATAATATT
Gene Information
NCBI Accession
|
NP_042588.1
|
Location
|
145-468 |
Gene Name
|
V1 |
Protein Name
|
movement protein |
Coding Region
|
ATGGATGCTAGCAGCACCACTCCTTTTCCTTTCCCTCAGCCGCCTCGGGTACCCTCTGCAGCTCCGGTCGCCGGAGCGCTGCCGTGGAGTCGCGTCGGTGAGATAGTTATCTTTACCTTTGTTTCAGTGCTAGGCCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATTGTATCTTACTTCTGAAGGCTCAGCGAGGTAGATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAGAGGCCAGCCGTCGCTTCTGCCGACGGTTCTCGCTCCGTTCCAGATCCGTCTCCGTCCTGTCCGCCGGGACCTAGACCTTTCGTGGTCTAG |
Protein Sequence
|
MDASSTTPFPFPQPPRVPSAAPVAGALPWSRVGEIVIFTFVSVLGLYLLWLWVLKDCILLLKAQRGRSTEELIFGPGERPAVASADGSRSVPDPSPSCPPGPRPFVV |
NCBI Accession
|
NP_042589.1
|
Location
|
479-1225 |
Gene Name
|
CP |
Protein Name
|
coat protein |
Coding Region
|
ATGTCCGGAGCTTTGAAGCGCAAGCGTTCGGATGAGGTTGCCTGGAGTCGAAGGAAGCCCGTCAAGAAGCAAGACACCGGGTTCCCCCTCCCCCGGGCTGGCCCCTCTGTCAGGAGAGGACTCCCTGCCCTTCAGATCCAGACGCTTACGGCGGCTGGTGACACTATGATCACGGTGCCGTCCGGCGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCTCTGATGAAGGTAACCGCCACACCAACGAGACTCTGACGTACAAGGTTGCGCTGGACTACCACTTCGTTGCTACTGCTGCGGCCTGCAAGTACTCCAGCATTGGAGTGGGTGTCATGTGGTTGGTGTATGATGCGCAGCCGACCGGCAATTCACCGGAGGTGAAGGACATCTTCCCTCACTCCGATACGCTCTCAGCGTTCCCGTACACTTGGAAGGTTGGCAGGGAGGTCTGCCATCGCTTCGTTGTTAAACGGCGCTGGTGCTTCACCATGGAGACTAACGGCCGGATCGGTTCAGATGTGCCTCCGGCCAATACCGCTTGGCCGCCTTGCAAGAAGGACATCTACTTCCACAAGTTCTGCACGGGACTCGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGTCGGCGCTATTAAGAAGGGCGCCTTGTACATTGTCATTGCGCCTGGAAACGGGCTTGAGTTTACGGTTCACGGCCAGTGCCGTCTGTACTTTAAGTCAGTTGGTAATCAGTGA |
Protein Sequence
|
MSGALKRKRSDEVAWSRRKPVKKQDTGFPLPRAGPSVRRGLPALQIQTLTAAGDTMITVPSGGICSLIGTYARGSDEGNRHTNETLTYKVALDYHFVATAAACKYSSIGVGVMWLVYDAQPTGNSPEVKDIFPHSDTLSAFPYTWKVGREVCHRFVVKRRWCFTMETNGRIGSDVPPANTAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYIVIAPGNGLEFTVHGQCRLYFKSVGNQ |
NCBI Accession
|
NP_042590.1
|
Location
|
1590-2564 |
Gene Name
|
RepA |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGTCGACCTCTCTGTCTATCACCTCAGATGGCAGGCACAGCGTCCGGTCCTTCAGGCACCGGAACGCGAACACCTTCCTCACATACAGCAAGTGTCCACTAGAACCTGAGTTCATCGGTGAGCATCTCTTCAGGCTCACTAAGGACTTTGAGCCAGCATACATCCTGGTAGTGAGAGAGACTCACCAAGACGGAACATGGCACTGCCATGCTCTTCTCCAGTGCATCAAGCCTGTCACTACTCGTGACGAGAGGTACTTTGACATAGATCGGTATCATCCGAATATACAGAGCGCCAAGAGCACTGACAAGGTACGTGAGTACATACTGAAGGATCCCAAGGACAAGTGGGAGAAAGGTACTTACATACCAAGGAAGAAGAGCTTCGTTCCTCCAGGTAAGGAAAACTCTGAGAAGAAGCCTTCTAAGGATGAGGTCATGAAGGAGATCATGACACATGCCACTAGCAGAGCAGAGTACCTTTCACTAGTGCAGACTTCACTGCCTTACGACTGGGCCACAAAACTGTCATACTTTGAGTACTCAGCTAGTCGCCTGTTCCCGGACATTGCAGAGCCTTACAGCAATCCTCATCCTGCCACTGACCCTGACCTCCTCTGCAACGAAACACTCCAGGACTGGCTTGAGCCTAACATCTACCAGGTCAGTCCTAAAGCATACATGCTCCTTGAACCTAGCTGCTTAAGCCTAGAGCAAGCCAAAGCTGACTTAGAATGGTTGTCTGAAACAACCAGATTATTCCAGGAGCAAGAAAGCGAAGCCTCTACATCGTCGGCCCAACACGGACAGGTAAAACATCCTGGGCCAGAAGCCTCGGACGGCACAACTACTGGCAGAATAACATCGACTGGTCTTCATACGATGAAGAAGCTGCGTACAATGTCGTGGACGACATTCCCTTCAAGTTCTGTCCGTGCTGGAAGCAGCTCGTCGGCTGTCAAAAAGACTACATAG |
Protein Sequence
|
MSTSLSITSDGRHSVRSFRHRNANTFLTYSKCPLEPEFIGEHLFRLTKDFEPAYILVVRETHQDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDKVREYILKDPKDKWEKGTYIPRKKSFVPPGKENSEKKPSKDEVMKEIMTHATSRAEYLSLVQTSLPYDWATKLSYFEYSASRLFPDIAEPYSNPHPATDPDLLCNETLQDWLEPNIYQVSPKAYMLLEPSCLSLEQAKADLEWLSETTRLFQEQESEASTSSAQHGQVKHPGPEASDGTTTGRITSTGLHTMKKLRTMSWTTFPSSSVRAGSSSSAVKKTT |