Panicum streak virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000839585.1
Release date 2015/2/12
Submitter Schnippenkoetter,W.H., Martin,D.P., Hughes,F.L., Fyvie,M., Willment,J.A., James,D., von Wechmar,M.B., Rybicki,E.P.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_001647
ACCGCTCACACCCCATGCGAGCCACGGCCCTGTGTGGCGAGCGGTCCCCGGATGTTCTTACCCCGGTGCGATTTCTTTAGCTGCGTGTTCTTTAGCAGCTGCCCCCACTGTCCTATAAGTTGCTCCCCGGTGCGATTCCGCATCATGGATGCTAGCAGCACCACTCCTTTTCCTTTCCCTCAGCCGCCTCGGGTACCCTCTGCAGCTCCGGTCGCCGGAGCGCTGCCGTGGAGTCGCGTCGGTGAGATAGTTATCTTTACCTTTGTTTCAGTGCTAGGCCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATTGTATCTTACTTCTGAAGGCTCAGCGAGGTAGATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAGAGGCCAGCCGTCGCTTCTGCCGACGGTTCTCGCTCCGTTCCAGATCCGTCTCCGTCCTGTCCGCCGGGACCTAGACCTTTCGTGGTCTAGAGCACTCAGCATGTCCGGAGCTTTGAAGCGCAAGCGTTCGGATGAGGTTGCCTGGAGTCGAAGGAAGCCCGTCAAGAAGCAAGACACCGGGTTCCCCCTCCCCCGGGCTGGCCCCTCTGTCAGGAGAGGACTCCCTGCCCTTCAGATCCAGACGCTTACGGCGGCTGGTGACACTATGATCACGGTGCCGTCCGGCGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCTCTGATGAAGGTAACCGCCACACCAACGAGACTCTGACGTACAAGGTTGCGCTGGACTACCACTTCGTTGCTACTGCTGCGGCCTGCAAGTACTCCAGCATTGGAGTGGGTGTCATGTGGTTGGTGTATGATGCGCAGCCGACCGGCAATTCACCGGAGGTGAAGGACATCTTCCCTCACTCCGATACGCTCTCAGCGTTCCCGTACACTTGGAAGGTTGGCAGGGAGGTCTGCCATCGCTTCGTTGTTAAACGGCGCTGGTGCTTCACCATGGAGACTAACGGCCGGATCGGTTCAGATGTGCCTCCGGCCAATACCGCTTGGCCGCCTTGCAAGAAGGACATCTACTTCCACAAGTTCTGCACGGGACTCGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGTCGGCGCTATTAAGAAGGGCGCCTTGTACATTGTCATTGCGCCTGGAAACGGGCTTGAGTTTACGGTTCACGGCCAGTGCCGTCTGTACTTTAAGTCAGTTGGTAATCAGTGATTACCACATCAATTAATAAAACAAGTTTTATTCAAAGAGCGAAGCTCATACATTACATAGTCAGCAGATATGCTGACAGAAAACACACACATAGTGCAGCCTCGGGCTAAAGACCGAGTCTCAAACGACCCAACTTAAAAACAAATCAAAACAAGCATGATATTATTAAATATGCAGCCGCCGGCTTAAGCAGGAGTGAACCACTTCTCTCCTGCCTGCATTACGTAGATTTCGCAGTTTGCGTAGAAGTAGTCATACTGCGCCGGAGTCATGTCCTTCAGCCAGTCCTCATCCTCGTTGGCGAGGATGATAGTTGGTATGCTCTTTGAGGCCACCTTCCGTCTCTTCCCGTACTTCGGGTTCACTATGTAGTCTTTTTGACAGCCGACGAGCTGCTTCCAGCACGGACAGAACTTGAAGGGAATGTCGTCCACGACATTGTACGCAGCTTCTTCATCGTATGAAGACCAGTCGATGTTATTCTGCCAGTAGTTGTGCCGTCCGAGGCTTCTGGCCCAGGATGTTTTACCTGTCCGTGTTGGGCCGACGATGTAGAGGCTTCGCTTTCTTGCTCCTGGAATAATCTGGTTGTTTCAGACAACCATTCTAAGTCAGCTTTGGCTTGCTCTAGGCTTAAGCAGCTAGGTTCAAGGAGCATGTATGCTTTAGGACTGACCTGGTAGATGTTAGGCTCAAGCCAGTCCTGGAGTGTTTCGTTGCAGAGGAGGTCAGGGTCAGTGGCAGGATGAGGATTGCTGTAAGGCTCTGCAATGTCCGGGAACAGGCGACTAGCTGAGTACTCAAAGTATGACAGTTTTGTGGCCCAGTCGTAAGGCAGTGAAGTCTGCACTAGTGAAAGGTACTCTGCTCTGCTAGTGGCATGTGTCATGATCTCCTTCATGACCTCATCCTTAGAAGGCTTCTTCTCAGAGTTTTCCTTACCTGGAGGAACGAAGCTCTTCTTCCTTGGTATGTAAGTACCTTTCTCCCACTTGTCCTTGGGATCCTTCAGTATGTACTCACGTACCTTGTCAGTGCTCTTGGCGCTCTGTATATTCGGATGATACCGATCTATGTCAAAGTACCTCTCGTCACGAGTAGTGACAGGCTTGATGCACTGGAGAAGAGCATGGCAGTGCCATGTTCCGTCTTGGTGAGTCTCTCTCACTACCAGGATGTATGCTGGCTCAAAGTCCTTAGTGAGCCTGAAGAGATGCTCACCGATGAACTCAGGTTCTAGTGGACACTTGCTGTATGTGAGGAAGGTGTTCGCGTTCCGGTGCCTGAAGGACCGGACGCTGTGCCTGCCATCTGAGGTGATAGACAGAGAGGTCGACATTAGCGCAGGAGGTTGGGCAATCTCAGGCTCTCCTCAGCTCTATCCCTAGACAGCTGCGAAATAATCCGCCCACCCCCCGTGCCTTTTATAGCTGCTTGGTGGGCTGGGCCGGCCGGCATGGGGTGTGAGCAGCATAATATT

Gene Information

NCBI Accession NP_042588.1
Location 145-468
Gene Name V1
Protein Name movement protein
Coding Region ATGGATGCTAGCAGCACCACTCCTTTTCCTTTCCCTCAGCCGCCTCGGGTACCCTCTGCAGCTCCGGTCGCCGGAGCGCTGCCGTGGAGTCGCGTCGGTGAGATAGTTATCTTTACCTTTGTTTCAGTGCTAGGCCTTTACCTGCTTTGGCTTTGGGTGCTCAAAGATTGTATCTTACTTCTGAAGGCTCAGCGAGGTAGATCCACGGAGGAGCTGATCTTTGGTCCTGGTGAGAGGCCAGCCGTCGCTTCTGCCGACGGTTCTCGCTCCGTTCCAGATCCGTCTCCGTCCTGTCCGCCGGGACCTAGACCTTTCGTGGTCTAG
Protein Sequence MDASSTTPFPFPQPPRVPSAAPVAGALPWSRVGEIVIFTFVSVLGLYLLWLWVLKDCILLLKAQRGRSTEELIFGPGERPAVASADGSRSVPDPSPSCPPGPRPFVV

NCBI Accession NP_042589.1
Location 479-1225
Gene Name CP
Protein Name coat protein
Coding Region ATGTCCGGAGCTTTGAAGCGCAAGCGTTCGGATGAGGTTGCCTGGAGTCGAAGGAAGCCCGTCAAGAAGCAAGACACCGGGTTCCCCCTCCCCCGGGCTGGCCCCTCTGTCAGGAGAGGACTCCCTGCCCTTCAGATCCAGACGCTTACGGCGGCTGGTGACACTATGATCACGGTGCCGTCCGGCGGCATCTGCAGTCTGATTGGCACGTATGCCCGGGGCTCTGATGAAGGTAACCGCCACACCAACGAGACTCTGACGTACAAGGTTGCGCTGGACTACCACTTCGTTGCTACTGCTGCGGCCTGCAAGTACTCCAGCATTGGAGTGGGTGTCATGTGGTTGGTGTATGATGCGCAGCCGACCGGCAATTCACCGGAGGTGAAGGACATCTTCCCTCACTCCGATACGCTCTCAGCGTTCCCGTACACTTGGAAGGTTGGCAGGGAGGTCTGCCATCGCTTCGTTGTTAAACGGCGCTGGTGCTTCACCATGGAGACTAACGGCCGGATCGGTTCAGATGTGCCTCCGGCCAATACCGCTTGGCCGCCTTGCAAGAAGGACATCTACTTCCACAAGTTCTGCACGGGACTCGGCGTGAAGACGGAGTGGAAGAACGTTACAGACGGGAAGGTCGGCGCTATTAAGAAGGGCGCCTTGTACATTGTCATTGCGCCTGGAAACGGGCTTGAGTTTACGGTTCACGGCCAGTGCCGTCTGTACTTTAAGTCAGTTGGTAATCAGTGA
Protein Sequence MSGALKRKRSDEVAWSRRKPVKKQDTGFPLPRAGPSVRRGLPALQIQTLTAAGDTMITVPSGGICSLIGTYARGSDEGNRHTNETLTYKVALDYHFVATAAACKYSSIGVGVMWLVYDAQPTGNSPEVKDIFPHSDTLSAFPYTWKVGREVCHRFVVKRRWCFTMETNGRIGSDVPPANTAWPPCKKDIYFHKFCTGLGVKTEWKNVTDGKVGAIKKGALYIVIAPGNGLEFTVHGQCRLYFKSVGNQ

NCBI Accession NP_042590.1
Location 1590-2564
Gene Name RepA
Protein Name replication-associated protein
Coding Region ATGTCGACCTCTCTGTCTATCACCTCAGATGGCAGGCACAGCGTCCGGTCCTTCAGGCACCGGAACGCGAACACCTTCCTCACATACAGCAAGTGTCCACTAGAACCTGAGTTCATCGGTGAGCATCTCTTCAGGCTCACTAAGGACTTTGAGCCAGCATACATCCTGGTAGTGAGAGAGACTCACCAAGACGGAACATGGCACTGCCATGCTCTTCTCCAGTGCATCAAGCCTGTCACTACTCGTGACGAGAGGTACTTTGACATAGATCGGTATCATCCGAATATACAGAGCGCCAAGAGCACTGACAAGGTACGTGAGTACATACTGAAGGATCCCAAGGACAAGTGGGAGAAAGGTACTTACATACCAAGGAAGAAGAGCTTCGTTCCTCCAGGTAAGGAAAACTCTGAGAAGAAGCCTTCTAAGGATGAGGTCATGAAGGAGATCATGACACATGCCACTAGCAGAGCAGAGTACCTTTCACTAGTGCAGACTTCACTGCCTTACGACTGGGCCACAAAACTGTCATACTTTGAGTACTCAGCTAGTCGCCTGTTCCCGGACATTGCAGAGCCTTACAGCAATCCTCATCCTGCCACTGACCCTGACCTCCTCTGCAACGAAACACTCCAGGACTGGCTTGAGCCTAACATCTACCAGGTCAGTCCTAAAGCATACATGCTCCTTGAACCTAGCTGCTTAAGCCTAGAGCAAGCCAAAGCTGACTTAGAATGGTTGTCTGAAACAACCAGATTATTCCAGGAGCAAGAAAGCGAAGCCTCTACATCGTCGGCCCAACACGGACAGGTAAAACATCCTGGGCCAGAAGCCTCGGACGGCACAACTACTGGCAGAATAACATCGACTGGTCTTCATACGATGAAGAAGCTGCGTACAATGTCGTGGACGACATTCCCTTCAAGTTCTGTCCGTGCTGGAAGCAGCTCGTCGGCTGTCAAAAAGACTACATAG
Protein Sequence MSTSLSITSDGRHSVRSFRHRNANTFLTYSKCPLEPEFIGEHLFRLTKDFEPAYILVVRETHQDGTWHCHALLQCIKPVTTRDERYFDIDRYHPNIQSAKSTDKVREYILKDPKDKWEKGTYIPRKKSFVPPGKENSEKKPSKDEVMKEIMTHATSRAEYLSLVQTSLPYDWATKLSYFEYSASRLFPDIAEPYSNPHPATDPDLLCNETLQDWLEPNIYQVSPKAYMLLEPSCLSLEQAKADLEWLSETTRLFQEQESEASTSSAQHGQVKHPGPEASDGTTTGRITSTGLHTMKKLRTMSWTTFPSSSVRAGSSSSAVKKTT