Oat dwarf virus
Basic Information
Genus |
Mastrevirus
|
NCBI Assembly |
GCF_000875245.1 |
Isolate |
Germany:Saxony-Anhalt |
Release date |
2015/2/13 |
Submitter |
Schubert,J., Habekuss,A., Kazmaier,K., Jeske,H. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCCTCCGTGGCCCCCCCCGAGGCCCACGTGGCTTTTCGTACGTGGGCCGAGGCCGCTAGTGCGCGGTCCCGGATAAGATGCTGATTGTGTCACTGTCACACTTATTGTGATTGTGTGCAATCTGCACCAAATGGAATCTGTGATAACTTAGACTATAAGTAAGGATGATTGCGAAGCATATGGATGGAGATTTCCCAGTATACCCCGCCTCTACCATATAGAGATCAGCTGTATACTGCTCCCGTCTCTACGGAGTCTTCTGACTTAGCCTGGCGAACCTTTGTGTTCGTGATATTTGGTTGCTTAGTTGCTGTAGGCATCATTTATCTGGCTTATACTCTTTTCCTGAAGGACTGCATTCTTGTCTGGAAGGCTAAGAGACAGAAGAAGACGGAGGAGATTGGATACGGGAATACCCCGGCGCGTCCTCAATGACTGATTTAAAGTCTAAGGGGAAGCGTAAGCGGGATGAGGGGGAGTCATCTGGAAGATGGAAGGGAGCCGTATACAAGAGGCGTAAGACCCAGTACAAGGTTGTACCTGTCAGGCCACCGGCTCTCTGTGTTCTCCGTCAGCAGTGGATTACTCCGGACAAGCAGAGTGTGGTTGTTACCAACACTCCGAGGATTGATCTTATTACATGCTTTGCAGCTGGGAAGGGCGATGATAATCGCCATACTAACCAGACCATCATGTACAAGTTTCACCTGCAGGGGAGTGTGTACGTGGCGGATGCTTCCTCCAAGTTCGTAACTCCGTTGAGGTTGTATCACTGGCTCGTCTATGACGCCGAGCCTAAACAGGCCATGCCTGGTATTGAAGACATCTTCACGATGCCTTGGAATGTCCTGCCATCCACATGGACCATCTGGAGAGCCTGGGCTCACCGGTTCGTAGTGAAGAGGAAGTGGCACGTAGACCTCGTCTCAGACGGCAAGAAGGTTGGGTCGTCCACCGCTGATACGCGGTATAACTACGTAGTAGGGAAGAACATAGTCGACTGCAATAAGTTCATCAAGGGTCTCCGTGTATCCACGGAATGGATGAACACGGGTGATGGCAAGATTGGTGACATTAAGAAGGGAGCGCTGTATCTAGTTACATGTACTAGGGCTGGAGTCACTGGTGACTCTGCATCCACTGGTTTCAGTGTGGTCTGTAACTTGACACATGCGTGTTATTTCAAGTCCATTGGACTGCAATAAATATATATATATATTTCTGGTTACAATCTTATTACATCGGCTCAGCTATGAGCAAAGACAAACCAAATTATCACAAACATAAAACACACCTTACACAAATATATCACAACGAAATACAACACCCTGAGATATTATGTTTATAATGATGTACGCCGTCCGCGCTAGGACAGTCACTGCGAAGCAGTGGCCCCTTCACCGAAGGTGAAGGAATGGTTGATAAATGTCTCACCATCTTCCATATAGTGGATCTCGGCGTTGGCGTACAAATAGTCCGACTGCAGGGGAGTCATGTCCTTCAGCCAGTCTTCATCAGGGTTTACTAAAACGATACATGGTATGCCACCCCTGATTGTCTTCTTCTTGCCATACTTGGGGTTGACTGTGAAATCCTTCTGAGCACCGAGGAAGCATTTCCAGTTTGGCACATATTTAATAGGGATGTCATCTATTATATTGTATAATGCATCAGCATTATAGTTCGTGAAATCTACTTGGCTGTTGTAGTAGTTGTGGATCCCTAGAGATCTTGCCCAGGAAGTCTTTCCTGTTCTAGTAGGTCCGCAAATGTAGAGGGATCTATGGCGTCCTGGTGATTCCTAGTATAGTCATCCATCCACCTGAGGTTAGATAGAGCTTGGTCCGAAGGAATGCTATTACAAAGGATGTAAGAATCTAGACTTACAGTGAACAGTTCGGTGTTGGCCCAGTTTTGAATGGTCTCATGACATATCAGAGATTCCGTTGGAAACTCTGGTGTATACTGGGGGATGGGATCAGGAAATAGATAGTTAGCAGTATACTGGAAGCGTTGTAGGTTGATAGACCATTCAAACGGGAACCTAGATCTGACCATACTGATGAACTCCTCCTTGGAGGTAGCAGACTCGATGATCTGCTTCATCGCTTCGTCCTTATCAGGACGACCAGAAGTTGTGTGGTGGATGAATGTTCCCCACTCAGCAGTATGTTCATGAGAATCAACCTCCTTGGTGATGTACTCACGAACATCGTTGCAGTTGTTGGCAGGTTGGATGTTGGGATGATATGTGGTGAATGGAGATAAGTCCATCCGTAGGTTCAAGGCATTGGGATTGGTGATTGAAGCTCTCTTCTCACACTGCACGAGTACGTGCAGATGTGGTGAATTGTCTTCATGTCGCTCTCTGACGGAGCAGATATACAGTGGTTTATACTTCTGGAGGAGAGAGCGAAGAGAATCCAAGGCGTACTGTGGCTCAAGGATGCATTGTGGATATGTAAGGAATAAATATTTGGAGTAGACGCGAAACCTGGTGGAGCTGGAAGCAACGGTAGCCATGGCTAACACAGAAGTCCGCTAGGTCCTTAGCAGAAATCAGGGGTGTCCCAGAAAACTCTATGCTTACCCTCCGTGTGCCGGTGTGCAGGATTCACATCGTTTTGTGAATGTGTGAGTAGCCTATTTATAGGCGGGAGTTCAGTGCGGGATGTTAGTTAGGCCGAAGGCCCACTAACGGGTGTGCGGGTTCGGGGGAGGCCACGGAGGTCTAATATT
Gene Information
NCBI Accession
|
YP_001941160.1
|
Location
|
185-436 |
Gene Name
|
V1 |
Protein Name
|
hypothetical protein |
Coding Region
|
ATGGAGATTTCCCAGTATACCCCGCCTCTACCATATAGAGATCAGCTGTATACTGCTCCCGTCTCTACGGAGTCTTCTGACTTAGCCTGGCGAACCTTTGTGTTCGTGATATTTGGTTGCTTAGTTGCTGTAGGCATCATTTATCTGGCTTATACTCTTTTCCTGAAGGACTGCATTCTTGTCTGGAAGGCTAAGAGACAGAAGAAGACGGAGGAGATTGGATACGGGAATACCCCGGCGCGTCCTCAATGA |
Protein Sequence
|
MEISQYTPPLPYRDQLYTAPVSTESSDLAWRTFVFVIFGCLVAVGIIYLAYTLFLKDCILVWKAKRQKKTEEIGYGNTPARPQ |
NCBI Accession
|
YP_001941161.1
|
Location
|
433-1206 |
Gene Name
|
V2 |
Protein Name
|
Coat protein |
Coding Region
|
ATGACTGATTTAAAGTCTAAGGGGAAGCGTAAGCGGGATGAGGGGGAGTCATCTGGAAGATGGAAGGGAGCCGTATACAAGAGGCGTAAGACCCAGTACAAGGTTGTACCTGTCAGGCCACCGGCTCTCTGTGTTCTCCGTCAGCAGTGGATTACTCCGGACAAGCAGAGTGTGGTTGTTACCAACACTCCGAGGATTGATCTTATTACATGCTTTGCAGCTGGGAAGGGCGATGATAATCGCCATACTAACCAGACCATCATGTACAAGTTTCACCTGCAGGGGAGTGTGTACGTGGCGGATGCTTCCTCCAAGTTCGTAACTCCGTTGAGGTTGTATCACTGGCTCGTCTATGACGCCGAGCCTAAACAGGCCATGCCTGGTATTGAAGACATCTTCACGATGCCTTGGAATGTCCTGCCATCCACATGGACCATCTGGAGAGCCTGGGCTCACCGGTTCGTAGTGAAGAGGAAGTGGCACGTAGACCTCGTCTCAGACGGCAAGAAGGTTGGGTCGTCCACCGCTGATACGCGGTATAACTACGTAGTAGGGAAGAACATAGTCGACTGCAATAAGTTCATCAAGGGTCTCCGTGTATCCACGGAATGGATGAACACGGGTGATGGCAAGATTGGTGACATTAAGAAGGGAGCGCTGTATCTAGTTACATGTACTAGGGCTGGAGTCACTGGTGACTCTGCATCCACTGGTTTCAGTGTGGTCTGTAACTTGACACATGCGTGTTATTTCAAGTCCATTGGACTGCAATAA |
Protein Sequence
|
MTDLKSKGKRKRDEGESSGRWKGAVYKRRKTQYKVVPVRPPALCVLRQQWITPDKQSVVVTNTPRIDLITCFAAGKGDDNRHTNQTIMYKFHLQGSVYVADASSKFVTPLRLYHWLVYDAEPKQAMPGIEDIFTMPWNVLPSTWTIWRAWAHRFVVKRKWHVDLVSDGKKVGSSTADTRYNYVVGKNIVDCNKFIKGLRVSTEWMNTGDGKIGDIKKGALYLVTCTRAGVTGDSASTGFSVVCNLTHACYFKSIGLQ |
NCBI Accession
|
YP_001941162.1
|
Location
|
1377-1791,1887-2524 |
Gene Name
|
rep |
Protein Name
|
Replicase |
Coding Region
|
ATGGCTACCGTTGCTTCCAGCTCCACCAGGTTTCGCGTCTACTCCAAATATTTATTCCTTACATATCCACAATGCATCCTTGAGCCACAGTACGCCTTGGATTCTCTTCGCTCTCTCCTCCAGAAGTATAAACCACTGTATATCTGCTCCGTCAGAGAGCGACATGAAGACAATTCACCACATCTGCACGTACTCGTGCAGTGTGAGAAGAGAGCTTCAATCACCAATCCCAATGCCTTGAACCTACGGATGGACTTATCTCCATTCACCACATATCATCCCAACATCCAACCTGCCAACAACTGCAACGATGTTCGTGAGTACATCACCAAGGAGGTTGATTCTCATGAACATACTGCTGAGTGGGGAACATTCATCCACCACACAACTTCTGGTCGTCCTGATAAGGACGAAGCGATGAAGCAGATCATCGAGTCTGCTACCTCCAAGGAGGAGTTCATCAGTATGGTCAGATCTAGGTTCCCGTTTGAATGGTCTATCAACCTACAACGCTTCCAGTATACTGCTAACTATCTATTTCCTGATCCCATCCCCCAGTATACACCAGAGTTTCCAACGGAATCTCTGATATGTCATGAGACCATTCAAAACTGGGCCAACACCGAACTGTTCACTGTACGCCATAGATCCCTCTACATTTGCGGACCTACTAGAACAGGAAAGACTTCCTGGGCAAGATCTCTAGGGATCCACAACTACTACAACAGCCAAGTAGATTTCACGAACTATAATGCTGATGCATTATACAATATAATAGATGACATCCCTATTAAATATGTGCCAAACTGGAAATGCTTCCTCGGTGCTCAGAAGGATTTCACAGTCAACCCCAAGTATGGCAAGAAGAAGACAATCAGGGGTGGCATACCATGTATCGTTTTAGTAAACCCTGATGAAGACTGGCTGAAGGACATGACTCCCCTGCAGTCGGACTATTTGTACGCCAACGCCGAGATCCACTATATGGAAGATGGTGAGACATTTATCAACCATTCCTTCACCTTCGGTGAAGGGGCCACTGCTTCGCAGTGA |
Protein Sequence
|
MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKPLYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCNDVREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPFEWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVRHRSLYICGPTRTGKTSWARSLGIHNYYNSQVDFTNYNADALYNIIDDIPIKYVPNWKCFLGAQKDFTVNPKYGKKKTIRGGIPCIVLVNPDEDWLKDMTPLQSDYLYANAEIHYMEDGETFINHSFTFGEGATASQ |
NCBI Accession
|
YP_001941163.1
|
Location
|
1724-2524 |
Gene Name
|
C1-1 |
Protein Name
|
RepA |
Coding Region
|
ATGGCTACCGTTGCTTCCAGCTCCACCAGGTTTCGCGTCTACTCCAAATATTTATTCCTTACATATCCACAATGCATCCTTGAGCCACAGTACGCCTTGGATTCTCTTCGCTCTCTCCTCCAGAAGTATAAACCACTGTATATCTGCTCCGTCAGAGAGCGACATGAAGACAATTCACCACATCTGCACGTACTCGTGCAGTGTGAGAAGAGAGCTTCAATCACCAATCCCAATGCCTTGAACCTACGGATGGACTTATCTCCATTCACCACATATCATCCCAACATCCAACCTGCCAACAACTGCAACGATGTTCGTGAGTACATCACCAAGGAGGTTGATTCTCATGAACATACTGCTGAGTGGGGAACATTCATCCACCACACAACTTCTGGTCGTCCTGATAAGGACGAAGCGATGAAGCAGATCATCGAGTCTGCTACCTCCAAGGAGGAGTTCATCAGTATGGTCAGATCTAGGTTCCCGTTTGAATGGTCTATCAACCTACAACGCTTCCAGTATACTGCTAACTATCTATTTCCTGATCCCATCCCCCAGTATACACCAGAGTTTCCAACGGAATCTCTGATATGTCATGAGACCATTCAAAACTGGGCCAACACCGAACTGTTCACTGTAAGTCTAGATTCTTACATCCTTTGTAATAGCATTCCTTCGGACCAAGCTCTATCTAACCTCAGGTGGATGGATGACTATACTAGGAATCACCAGGACGCCATAGATCCCTCTACATTTGCGGACCTACTAGAACAGGAAAGACTTCCTGGGCAAGATCTCTAG |
Protein Sequence
|
MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKPLYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCNDVREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPFEWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVSLDSYILCNSIPSDQALSNLRWMDDYTRNHQDAIDPSTFADLLEQERLPGQDL |