Oat dwarf virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000875245.1
Isolate Germany:Saxony-Anhalt
Release date 2015/2/13
Submitter Schubert,J., Habekuss,A., Kazmaier,K., Jeske,H.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_010799
ACCCTCCGTGGCCCCCCCCGAGGCCCACGTGGCTTTTCGTACGTGGGCCGAGGCCGCTAGTGCGCGGTCCCGGATAAGATGCTGATTGTGTCACTGTCACACTTATTGTGATTGTGTGCAATCTGCACCAAATGGAATCTGTGATAACTTAGACTATAAGTAAGGATGATTGCGAAGCATATGGATGGAGATTTCCCAGTATACCCCGCCTCTACCATATAGAGATCAGCTGTATACTGCTCCCGTCTCTACGGAGTCTTCTGACTTAGCCTGGCGAACCTTTGTGTTCGTGATATTTGGTTGCTTAGTTGCTGTAGGCATCATTTATCTGGCTTATACTCTTTTCCTGAAGGACTGCATTCTTGTCTGGAAGGCTAAGAGACAGAAGAAGACGGAGGAGATTGGATACGGGAATACCCCGGCGCGTCCTCAATGACTGATTTAAAGTCTAAGGGGAAGCGTAAGCGGGATGAGGGGGAGTCATCTGGAAGATGGAAGGGAGCCGTATACAAGAGGCGTAAGACCCAGTACAAGGTTGTACCTGTCAGGCCACCGGCTCTCTGTGTTCTCCGTCAGCAGTGGATTACTCCGGACAAGCAGAGTGTGGTTGTTACCAACACTCCGAGGATTGATCTTATTACATGCTTTGCAGCTGGGAAGGGCGATGATAATCGCCATACTAACCAGACCATCATGTACAAGTTTCACCTGCAGGGGAGTGTGTACGTGGCGGATGCTTCCTCCAAGTTCGTAACTCCGTTGAGGTTGTATCACTGGCTCGTCTATGACGCCGAGCCTAAACAGGCCATGCCTGGTATTGAAGACATCTTCACGATGCCTTGGAATGTCCTGCCATCCACATGGACCATCTGGAGAGCCTGGGCTCACCGGTTCGTAGTGAAGAGGAAGTGGCACGTAGACCTCGTCTCAGACGGCAAGAAGGTTGGGTCGTCCACCGCTGATACGCGGTATAACTACGTAGTAGGGAAGAACATAGTCGACTGCAATAAGTTCATCAAGGGTCTCCGTGTATCCACGGAATGGATGAACACGGGTGATGGCAAGATTGGTGACATTAAGAAGGGAGCGCTGTATCTAGTTACATGTACTAGGGCTGGAGTCACTGGTGACTCTGCATCCACTGGTTTCAGTGTGGTCTGTAACTTGACACATGCGTGTTATTTCAAGTCCATTGGACTGCAATAAATATATATATATATTTCTGGTTACAATCTTATTACATCGGCTCAGCTATGAGCAAAGACAAACCAAATTATCACAAACATAAAACACACCTTACACAAATATATCACAACGAAATACAACACCCTGAGATATTATGTTTATAATGATGTACGCCGTCCGCGCTAGGACAGTCACTGCGAAGCAGTGGCCCCTTCACCGAAGGTGAAGGAATGGTTGATAAATGTCTCACCATCTTCCATATAGTGGATCTCGGCGTTGGCGTACAAATAGTCCGACTGCAGGGGAGTCATGTCCTTCAGCCAGTCTTCATCAGGGTTTACTAAAACGATACATGGTATGCCACCCCTGATTGTCTTCTTCTTGCCATACTTGGGGTTGACTGTGAAATCCTTCTGAGCACCGAGGAAGCATTTCCAGTTTGGCACATATTTAATAGGGATGTCATCTATTATATTGTATAATGCATCAGCATTATAGTTCGTGAAATCTACTTGGCTGTTGTAGTAGTTGTGGATCCCTAGAGATCTTGCCCAGGAAGTCTTTCCTGTTCTAGTAGGTCCGCAAATGTAGAGGGATCTATGGCGTCCTGGTGATTCCTAGTATAGTCATCCATCCACCTGAGGTTAGATAGAGCTTGGTCCGAAGGAATGCTATTACAAAGGATGTAAGAATCTAGACTTACAGTGAACAGTTCGGTGTTGGCCCAGTTTTGAATGGTCTCATGACATATCAGAGATTCCGTTGGAAACTCTGGTGTATACTGGGGGATGGGATCAGGAAATAGATAGTTAGCAGTATACTGGAAGCGTTGTAGGTTGATAGACCATTCAAACGGGAACCTAGATCTGACCATACTGATGAACTCCTCCTTGGAGGTAGCAGACTCGATGATCTGCTTCATCGCTTCGTCCTTATCAGGACGACCAGAAGTTGTGTGGTGGATGAATGTTCCCCACTCAGCAGTATGTTCATGAGAATCAACCTCCTTGGTGATGTACTCACGAACATCGTTGCAGTTGTTGGCAGGTTGGATGTTGGGATGATATGTGGTGAATGGAGATAAGTCCATCCGTAGGTTCAAGGCATTGGGATTGGTGATTGAAGCTCTCTTCTCACACTGCACGAGTACGTGCAGATGTGGTGAATTGTCTTCATGTCGCTCTCTGACGGAGCAGATATACAGTGGTTTATACTTCTGGAGGAGAGAGCGAAGAGAATCCAAGGCGTACTGTGGCTCAAGGATGCATTGTGGATATGTAAGGAATAAATATTTGGAGTAGACGCGAAACCTGGTGGAGCTGGAAGCAACGGTAGCCATGGCTAACACAGAAGTCCGCTAGGTCCTTAGCAGAAATCAGGGGTGTCCCAGAAAACTCTATGCTTACCCTCCGTGTGCCGGTGTGCAGGATTCACATCGTTTTGTGAATGTGTGAGTAGCCTATTTATAGGCGGGAGTTCAGTGCGGGATGTTAGTTAGGCCGAAGGCCCACTAACGGGTGTGCGGGTTCGGGGGAGGCCACGGAGGTCTAATATT

Gene Information

NCBI Accession YP_001941160.1
Location 185-436
Gene Name V1
Protein Name hypothetical protein
Coding Region ATGGAGATTTCCCAGTATACCCCGCCTCTACCATATAGAGATCAGCTGTATACTGCTCCCGTCTCTACGGAGTCTTCTGACTTAGCCTGGCGAACCTTTGTGTTCGTGATATTTGGTTGCTTAGTTGCTGTAGGCATCATTTATCTGGCTTATACTCTTTTCCTGAAGGACTGCATTCTTGTCTGGAAGGCTAAGAGACAGAAGAAGACGGAGGAGATTGGATACGGGAATACCCCGGCGCGTCCTCAATGA
Protein Sequence MEISQYTPPLPYRDQLYTAPVSTESSDLAWRTFVFVIFGCLVAVGIIYLAYTLFLKDCILVWKAKRQKKTEEIGYGNTPARPQ

NCBI Accession YP_001941161.1
Location 433-1206
Gene Name V2
Protein Name Coat protein
Coding Region ATGACTGATTTAAAGTCTAAGGGGAAGCGTAAGCGGGATGAGGGGGAGTCATCTGGAAGATGGAAGGGAGCCGTATACAAGAGGCGTAAGACCCAGTACAAGGTTGTACCTGTCAGGCCACCGGCTCTCTGTGTTCTCCGTCAGCAGTGGATTACTCCGGACAAGCAGAGTGTGGTTGTTACCAACACTCCGAGGATTGATCTTATTACATGCTTTGCAGCTGGGAAGGGCGATGATAATCGCCATACTAACCAGACCATCATGTACAAGTTTCACCTGCAGGGGAGTGTGTACGTGGCGGATGCTTCCTCCAAGTTCGTAACTCCGTTGAGGTTGTATCACTGGCTCGTCTATGACGCCGAGCCTAAACAGGCCATGCCTGGTATTGAAGACATCTTCACGATGCCTTGGAATGTCCTGCCATCCACATGGACCATCTGGAGAGCCTGGGCTCACCGGTTCGTAGTGAAGAGGAAGTGGCACGTAGACCTCGTCTCAGACGGCAAGAAGGTTGGGTCGTCCACCGCTGATACGCGGTATAACTACGTAGTAGGGAAGAACATAGTCGACTGCAATAAGTTCATCAAGGGTCTCCGTGTATCCACGGAATGGATGAACACGGGTGATGGCAAGATTGGTGACATTAAGAAGGGAGCGCTGTATCTAGTTACATGTACTAGGGCTGGAGTCACTGGTGACTCTGCATCCACTGGTTTCAGTGTGGTCTGTAACTTGACACATGCGTGTTATTTCAAGTCCATTGGACTGCAATAA
Protein Sequence MTDLKSKGKRKRDEGESSGRWKGAVYKRRKTQYKVVPVRPPALCVLRQQWITPDKQSVVVTNTPRIDLITCFAAGKGDDNRHTNQTIMYKFHLQGSVYVADASSKFVTPLRLYHWLVYDAEPKQAMPGIEDIFTMPWNVLPSTWTIWRAWAHRFVVKRKWHVDLVSDGKKVGSSTADTRYNYVVGKNIVDCNKFIKGLRVSTEWMNTGDGKIGDIKKGALYLVTCTRAGVTGDSASTGFSVVCNLTHACYFKSIGLQ

NCBI Accession YP_001941162.1
Location 1377-1791,1887-2524
Gene Name rep
Protein Name Replicase
Coding Region ATGGCTACCGTTGCTTCCAGCTCCACCAGGTTTCGCGTCTACTCCAAATATTTATTCCTTACATATCCACAATGCATCCTTGAGCCACAGTACGCCTTGGATTCTCTTCGCTCTCTCCTCCAGAAGTATAAACCACTGTATATCTGCTCCGTCAGAGAGCGACATGAAGACAATTCACCACATCTGCACGTACTCGTGCAGTGTGAGAAGAGAGCTTCAATCACCAATCCCAATGCCTTGAACCTACGGATGGACTTATCTCCATTCACCACATATCATCCCAACATCCAACCTGCCAACAACTGCAACGATGTTCGTGAGTACATCACCAAGGAGGTTGATTCTCATGAACATACTGCTGAGTGGGGAACATTCATCCACCACACAACTTCTGGTCGTCCTGATAAGGACGAAGCGATGAAGCAGATCATCGAGTCTGCTACCTCCAAGGAGGAGTTCATCAGTATGGTCAGATCTAGGTTCCCGTTTGAATGGTCTATCAACCTACAACGCTTCCAGTATACTGCTAACTATCTATTTCCTGATCCCATCCCCCAGTATACACCAGAGTTTCCAACGGAATCTCTGATATGTCATGAGACCATTCAAAACTGGGCCAACACCGAACTGTTCACTGTACGCCATAGATCCCTCTACATTTGCGGACCTACTAGAACAGGAAAGACTTCCTGGGCAAGATCTCTAGGGATCCACAACTACTACAACAGCCAAGTAGATTTCACGAACTATAATGCTGATGCATTATACAATATAATAGATGACATCCCTATTAAATATGTGCCAAACTGGAAATGCTTCCTCGGTGCTCAGAAGGATTTCACAGTCAACCCCAAGTATGGCAAGAAGAAGACAATCAGGGGTGGCATACCATGTATCGTTTTAGTAAACCCTGATGAAGACTGGCTGAAGGACATGACTCCCCTGCAGTCGGACTATTTGTACGCCAACGCCGAGATCCACTATATGGAAGATGGTGAGACATTTATCAACCATTCCTTCACCTTCGGTGAAGGGGCCACTGCTTCGCAGTGA
Protein Sequence MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKPLYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCNDVREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPFEWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVRHRSLYICGPTRTGKTSWARSLGIHNYYNSQVDFTNYNADALYNIIDDIPIKYVPNWKCFLGAQKDFTVNPKYGKKKTIRGGIPCIVLVNPDEDWLKDMTPLQSDYLYANAEIHYMEDGETFINHSFTFGEGATASQ

NCBI Accession YP_001941163.1
Location 1724-2524
Gene Name C1-1
Protein Name RepA
Coding Region ATGGCTACCGTTGCTTCCAGCTCCACCAGGTTTCGCGTCTACTCCAAATATTTATTCCTTACATATCCACAATGCATCCTTGAGCCACAGTACGCCTTGGATTCTCTTCGCTCTCTCCTCCAGAAGTATAAACCACTGTATATCTGCTCCGTCAGAGAGCGACATGAAGACAATTCACCACATCTGCACGTACTCGTGCAGTGTGAGAAGAGAGCTTCAATCACCAATCCCAATGCCTTGAACCTACGGATGGACTTATCTCCATTCACCACATATCATCCCAACATCCAACCTGCCAACAACTGCAACGATGTTCGTGAGTACATCACCAAGGAGGTTGATTCTCATGAACATACTGCTGAGTGGGGAACATTCATCCACCACACAACTTCTGGTCGTCCTGATAAGGACGAAGCGATGAAGCAGATCATCGAGTCTGCTACCTCCAAGGAGGAGTTCATCAGTATGGTCAGATCTAGGTTCCCGTTTGAATGGTCTATCAACCTACAACGCTTCCAGTATACTGCTAACTATCTATTTCCTGATCCCATCCCCCAGTATACACCAGAGTTTCCAACGGAATCTCTGATATGTCATGAGACCATTCAAAACTGGGCCAACACCGAACTGTTCACTGTAAGTCTAGATTCTTACATCCTTTGTAATAGCATTCCTTCGGACCAAGCTCTATCTAACCTCAGGTGGATGGATGACTATACTAGGAATCACCAGGACGCCATAGATCCCTCTACATTTGCGGACCTACTAGAACAGGAAAGACTTCCTGGGCAAGATCTCTAG
Protein Sequence MATVASSSTRFRVYSKYLFLTYPQCILEPQYALDSLRSLLQKYKPLYICSVRERHEDNSPHLHVLVQCEKRASITNPNALNLRMDLSPFTTYHPNIQPANNCNDVREYITKEVDSHEHTAEWGTFIHHTTSGRPDKDEAMKQIIESATSKEEFISMVRSRFPFEWSINLQRFQYTANYLFPDPIPQYTPEFPTESLICHETIQNWANTELFTVSLDSYILCNSIPSDQALSNLRWMDDYTRNHQDAIDPSTFADLLEQERLPGQDL