Chilli leaf curl Ahmedabad virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_001316395.1
Isolate India: Ahmedabad
Release date 2015/10/16
Submitter Chahwala,F.D., Bhatt,B.S., Rathore,S., Singh,A.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_028046
ACCGGATGGCCGCGATTTTTTTTACCCTGGTCCCCACCACACGCACTAACGGACAAATACACGTGGACCAATGAAATTGGCTCCTCATCGCTAAATTATTAAATGGTCCCCTATTTAAACTTGGTCCCCAAGTAGTGCACACCAACCAATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGGTAGAAAATACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAATATCCGTTATTAGAGCGAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGTGTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGATGTCGTTCATATAGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGGTAAGCGTTTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAGAATATCAAAACGAAGAATCACACGAACAGTGTGATGTTCTTCCTCGTCCGTGATCGTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTGGCATGCAACCGTCACTGGTGGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGGAGGCTGGGAAATATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAATAAATGTTGAATTTTATTATGTGTGAACTTTGTACATAAACTGTTTGGGCTAATACATTCCATAATACATGGTCCACAGCTCGAATTACATTGTTTATGGAAATTACAGCAAAATTATTAATATATTGCAACACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGATGTCTCGGTTCCTGAGGAATGGCTTGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAGCAGCCGCAATCTAGGTCAACGCGACGACGCCGGGTCCCCTTCTTGGCCAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTGTGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATGTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACTTTAGGGCTGAGGTCTAAGTGACCACATAGGTAGTTATGTGGACCCAAAGACCTAGCCCACATGGTCTTGCCAGTCCTACTATCACCCTCAATCACAATACTCATGGGTCTCAAAGGCCGCGCAGCGGCACCCATCACGTTCTCAGAAGCCCAGTCTTCAAGTTCTGCCGGAACTTGATCGAAAGAAGAAGATAGAAAAGGAGATACATAAACCTCCGGTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACATAATCTTTTGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGAAGAGCTCTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGAAATGAGGTCGAAGAATCTGTTGTTTGTGCATTGATATTTCCCCTCGAATTGGACGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCTGCAAACCCTAATAAATAATTTATTCACAGGGGTTTGTAAGTTTTGTAATTGGGAAAGTGCCTCTTCTTTAGTGAGAGAGCAGTTGGGATATGTGAGGAAATAATTTTTAGCATTTATATTGAATCTTCCTGTCCTAGGCATATTGGTGGACACTCAAACTTACTATGCAATCGGTGGAATGGTGGACAATATATATGTGTCCACCAATGGCAAATTGGTAATTACAAAAAATAATTGAAAGTCCGTAAATCGCGGCCATCCGCATTAATATT

Gene Information

NCBI Accession YP_009170676.1
Location 149-496
Gene Name AV2
Protein Name precoat protein
Coding Region ATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGGTAGAAAATACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAATATCCGTTATTAGAGCGAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGA
Protein Sequence MWDPLVNEFPETVHGFRCMLAIKYLQLVENTYSPDSLGYDLIRELISVIRAKNYVQASSRYDHFRARLEVSSTADLNQPIQQACCCPHCPRHKGKGMGQQAHQSEADVLQNVQKS

NCBI Accession YP_009170677.1
Location 309-1079
Gene Name AV1
Protein Name coat protein
Coding Region ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGTGTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGATGTCGTTCATATAGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGGTAAGCGTTTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAGAATATCAAAACGAAGAATCACACGAACAGTGTGATGTTCTTCCTCGTCCGTGATCGTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTGGCATGCAACCGTCACTGGTGGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGGAGGCTGGGAAATATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAA
Protein Sequence MSKRPADMIISAPVSKYRRLLTSTSPYSKRAAVRIVRATKGKEWVNRPTNRKPMFYRMYRSPDVPTGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRGYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVQRN

NCBI Accession YP_009170678.1
Location 1076-1480
Gene Name C3
Protein Name Ren
Coding Region ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTGTTGCAATATATTAATAATTTTGCTGTAATTTCCATAAACAATGTAATTCGAGCTGTGGACCATGTATTATGGAATGTATTAGCCCAAACAGTTTATGTACAAAGTTCACACATAATAAAATTCAACATTTATTAA
Protein Sequence MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNKPFLRNRDIITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQYINNFAVISINNVIRAVDHVLWNVLAQTVYVQSSHIIKFNIY

NCBI Accession YP_009170679.1
Location 1221-1625
Gene Name C2
Protein Name TrAP
Coding Region ATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGACCTAGATTGCGGCTGCTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAG
Protein Sequence MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPQEPRHHHRADTVQSQPEESVGDTQVFSNLPNLDDLTASDWSFLKGI

NCBI Accession YP_009170680.1
Location 1528-2613
Gene Name C1
Protein Name rep protein
Coding Region ATGCCTAGGACAGGAAGATTCAATATAAATGCTAAAAATTATTTCCTCACATATCCCAACTGCTCTCTCACTAAAGAAGAGGCACTTTCCCAATTACAAAACTTACAAACCCCTGTGAATAAATTATTTATTAGGGTTTGCAGAGAATTGCACGAGAATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAAGGGAGAAAGCTCCAAAAGATTATGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCACCGGAGGTTTATGTATCTCCTTTTCTATCTTCTTCTTTCGATCAAGTTCCGGCAGAACTTGAAGACTGGGCTTCTGAGAACGTGATGGGTGCCGCTGCGCGGCCTTTGAGACCCATGAGTATTGTGATTGAGGGTGATAGTAGGACTGGCAAGACCATGTGGGCTAGGTCTTTGGGTCCACATAACTACCTATGTGGTCACTTAGACCTCAGCCCTAAAGTGTACAGCAATGATGCTTGGTATAACGTCATTGATGACGTTGATCCGCATTATCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAACATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGA
Protein Sequence MPRTGRFNINAKNYFLTYPNCSLTKEEALSQLQNLQTPVNKLFIRVCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNSNLDRIFTPPPEVYVSPFLSSSFDQVPAELEDWASENVMGAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPLYSGSNQSAAQAGQEGDPASSR

NCBI Accession YP_009170681.1
Location 2163-2456
Gene Name C4
Protein Name C4
Coding Region ATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAA
Protein Sequence MGNLIYTCSSNSRGNINAQTTDSSTSFPQPGQHISIQTFRELRALQMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF