Chilli leaf curl Ahmedabad virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_001316395.1 |
Isolate |
India: Ahmedabad |
Release date |
2015/10/16 |
Submitter |
Chahwala,F.D., Bhatt,B.S., Rathore,S., Singh,A.K. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTTACCCTGGTCCCCACCACACGCACTAACGGACAAATACACGTGGACCAATGAAATTGGCTCCTCATCGCTAAATTATTAAATGGTCCCCTATTTAAACTTGGTCCCCAAGTAGTGCACACCAACCAATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGGTAGAAAATACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAATATCCGTTATTAGAGCGAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGTGTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGATGTCGTTCATATAGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGGTAAGCGTTTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAGAATATCAAAACGAAGAATCACACGAACAGTGTGATGTTCTTCCTCGTCCGTGATCGTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTGGCATGCAACCGTCACTGGTGGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGGAGGCTGGGAAATATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAATAAATGTTGAATTTTATTATGTGTGAACTTTGTACATAAACTGTTTGGGCTAATACATTCCATAATACATGGTCCACAGCTCGAATTACATTGTTTATGGAAATTACAGCAAAATTATTAATATATTGCAACACTTGGGTCCTAAATACCCTTAAGAAATGACCAGTCCGAGGCTGTAAGGTCGTCCAGATTCGGAAGGTTAGAAAACACTTGTGTATCCCCAACGCTTTCCTCAGGTTGTGATTGAACTGTATCTGCACGGTGATGATGTCTCGGTTCCTGAGGAATGGCTTGTTGTGGTGCTCGGTTATCTTGAAATACAGGGGATTTGTTATCTCCCAGATAAACACGCCATTCTCTGCTTGAGCTGCAGTGATGGGTTCCCCTGTGCGTGAATCCATAGCCGTGGCAGCGTAATGCGATGAAATATGAGCAGCCGCAATCTAGGTCAACGCGACGACGCCGGGTCCCCTTCTTGGCCAGCCTGTGCTGCACTTTGATTGGAACCTGAGTAGAGTGGGCCTGTGAGGGTGATGAAGGTCGCATTCTTTAAAGCCCAATGTTTGAGTGCGGAATTCTTCTCTTCATCCAAGAACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGCGGGAATTCCACCTTTAATTTGAACTGGCTTTCCGTATTTTGTATTTGATTGCCAGTCTCTTTGGGCCCCCATGAATTCTTTAAAGTGTTTTAGATAATGCGGATCAACGTCATCAATGACGTTATACCAAGCATCATTGCTGTACACTTTAGGGCTGAGGTCTAAGTGACCACATAGGTAGTTATGTGGACCCAAAGACCTAGCCCACATGGTCTTGCCAGTCCTACTATCACCCTCAATCACAATACTCATGGGTCTCAAAGGCCGCGCAGCGGCACCCATCACGTTCTCAGAAGCCCAGTCTTCAAGTTCTGCCGGAACTTGATCGAAAGAAGAAGATAGAAAAGGAGATACATAAACCTCCGGTGGAGGTGTAAAAATCCTATCTAAATTAGAATTTAAATTATGAAATTGTAAAACATAATCTTTTGGAGCTTTCTCCCTTAAAATATTGAGGGCCGAAGACTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTGCCATCGATCTGGAAAACTCCAAAGTCAATGAAGTCTCCGTCTTTCTCCACATAGGCTTTGACATCTGAAGAGCTCTTAGCTCTCTGAATGTTTGGATGGAAATGTGCTGACCTGGTTGGGGAAATGAGGTCGAAGAATCTGTTGTTTGTGCATTGATATTTCCCCTCGAATTGGACGAGCACGTGTAGATGAGGTTCCCCATTCTCGTGCAATTCTCTGCAAACCCTAATAAATAATTTATTCACAGGGGTTTGTAAGTTTTGTAATTGGGAAAGTGCCTCTTCTTTAGTGAGAGAGCAGTTGGGATATGTGAGGAAATAATTTTTAGCATTTATATTGAATCTTCCTGTCCTAGGCATATTGGTGGACACTCAAACTTACTATGCAATCGGTGGAATGGTGGACAATATATATGTGTCCACCAATGGCAAATTGGTAATTACAAAAAATAATTGAAAGTCCGTAAATCGCGGCCATCCGCATTAATATT
Gene Information
NCBI Accession
|
YP_009170676.1
|
Location
|
149-496 |
Gene Name
|
AV2 |
Protein Name
|
precoat protein |
Coding Region
|
ATGTGGGATCCATTAGTAAACGAGTTCCCCGAAACCGTTCACGGTTTTAGGTGTATGCTTGCTATCAAATATCTGCAGTTGGTAGAAAATACGTATTCCCCTGATTCATTGGGATACGACTTGATACGAGAATTAATATCCGTTATTAGAGCGAAAAACTATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGA |
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAIKYLQLVENTYSPDSLGYDLIRELISVIRAKNYVQASSRYDHFRARLEVSSTADLNQPIQQACCCPHCPRHKGKGMGQQAHQSEADVLQNVQKS |
NCBI Accession
|
YP_009170677.1
|
Location
|
309-1079 |
Gene Name
|
AV1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCCAAGCGTCCAGCAGATATGATCATTTCCGCGCCCGTCTCGAAGTATCGTCGACTGCTGACCTCAACCAGCCCATACAGCAAGCGTGCTGCTGTCCGCATTGTCCGCGCCACAAAGGGAAAGGAATGGGTCAACAGGCCCACCAATCGGAAGCCGATGTTTTACAGAATGTACAGAAGTCCTGATGTCCCCACAGGGTGTGAGGGTCCATGTAAGGTTCAGTCTTTTGAGTCTAGACACGATGTCGTTCATATAGGTAAGGTCATGTGTATTAGTGATGTTACCCGCGGTACTGGGTTAACCCATAGGGTAGGTAAGCGTTTTTGTGTTAAGTCCGTGTATGTATTAGGCAAAATATGGATGGATGAGAATATCAAAACGAAGAATCACACGAACAGTGTGATGTTCTTCCTCGTCCGTGATCGTCGCCCTGTTGATAAACCACAAGATTTTGGAGAGGTCTTCAACATGTTTGACAACGAGCCTAGCACTGCAACTGTGAAGAATATGCATAGGGGGTACCAGGTGTTGCGGAAGTGGCATGCAACCGTCACTGGTGGACAATATGCGTCGAAGGAACAGGCCTTAGTGAAGAAGTTTGTTAGGGTTAACAATTATGTTGTTTATAACCAGCAGGAGGCTGGGAAATATGAAAACCACACGGAGAATGCTTTGATGTTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGCTTAAGATTCGTATCTACTTTTACGACTCTGTACAACGAAATTAA |
Protein Sequence
|
MSKRPADMIISAPVSKYRRLLTSTSPYSKRAAVRIVRATKGKEWVNRPTNRKPMFYRMYRSPDVPTGCEGPCKVQSFESRHDVVHIGKVMCISDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNMHRGYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVQRN |
NCBI Accession
|
YP_009170678.1
|
Location
|
1076-1480 |
Gene Name
|
C3 |
Protein Name
|
Ren |
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAGGACCCAAGTGTTGCAATATATTAATAATTTTGCTGTAATTTCCATAAACAATGTAATTCGAGCTGTGGACCATGTATTATGGAATGTATTAGCCCAAACAGTTTATGTACAAAGTTCACACATAATAAAATTCAACATTTATTAA |
Protein Sequence
|
MDSRTGEPITAAQAENGVFIWEITNPLYFKITEHHNKPFLRNRDIITVQIQFNHNLRKALGIHKCFLTFRIWTTLQPRTGHFLRVFRTQVLQYINNFAVISINNVIRAVDHVLWNVLAQTVYVQSSHIIKFNIY |
NCBI Accession
|
YP_009170679.1
|
Location
|
1221-1625 |
Gene Name
|
C2 |
Protein Name
|
TrAP |
Coding Region
|
ATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGACCTAGATTGCGGCTGCTCATATTTCATCGCATTACGCTGCCACGGCTATGGATTCACGCACAGGGGAACCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTTTATCTGGGAGATAACAAATCCCCTGTATTTCAAGATAACCGAGCACCACAACAAGCCATTCCTCAGGAACCGAGACATCATCACCGTGCAGATACAGTTCAATCACAACCTGAGGAAAGCGTTGGGGATACACAAGTGTTTTCTAACCTTCCGAATCTGGACGACCTTACAGCCTCGGACTGGTCATTTCTTAAGGGTATTTAG |
Protein Sequence
|
MRPSSPSQAHSTQVPIKVQHRLAKKGTRRRRVDLDCGCSYFIALRCHGYGFTHRGTHHCSSSREWRVYLGDNKSPVFQDNRAPQQAIPQEPRHHHRADTVQSQPEESVGDTQVFSNLPNLDDLTASDWSFLKGI |
NCBI Accession
|
YP_009170680.1
|
Location
|
1528-2613 |
Gene Name
|
C1 |
Protein Name
|
rep protein |
Coding Region
|
ATGCCTAGGACAGGAAGATTCAATATAAATGCTAAAAATTATTTCCTCACATATCCCAACTGCTCTCTCACTAAAGAAGAGGCACTTTCCCAATTACAAAACTTACAAACCCCTGTGAATAAATTATTTATTAGGGTTTGCAGAGAATTGCACGAGAATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAAGGGAGAAAGCTCCAAAAGATTATGTTTTACAATTTCATAATTTAAATTCTAATTTAGATAGGATTTTTACACCTCCACCGGAGGTTTATGTATCTCCTTTTCTATCTTCTTCTTTCGATCAAGTTCCGGCAGAACTTGAAGACTGGGCTTCTGAGAACGTGATGGGTGCCGCTGCGCGGCCTTTGAGACCCATGAGTATTGTGATTGAGGGTGATAGTAGGACTGGCAAGACCATGTGGGCTAGGTCTTTGGGTCCACATAACTACCTATGTGGTCACTTAGACCTCAGCCCTAAAGTGTACAGCAATGATGCTTGGTATAACGTCATTGATGACGTTGATCCGCATTATCTAAAACACTTTAAAGAATTCATGGGGGCCCAAAGAGACTGGCAATCAAATACAAAATACGGAAAGCCAGTTCAAATTAAAGGTGGAATTCCCGCTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTTCTTGGATGAAGAGAAGAATTCCGCACTCAAACATTGGGCTTTAAAGAATGCGACCTTCATCACCCTCACAGGCCCACTCTACTCAGGTTCCAATCAAAGTGCAGCACAGGCTGGCCAAGAAGGGGACCCGGCGTCGTCGCGTTGA |
Protein Sequence
|
MPRTGRFNINAKNYFLTYPNCSLTKEEALSQLQNLQTPVNKLFIRVCRELHENGEPHLHVLVQFEGKYQCTNNRFFDLISPTRSAHFHPNIQRAKSSSDVKAYVEKDGDFIDFGVFQIDGRSARGGCQSANDAYAEAINSGSKSSALNILREKAPKDYVLQFHNLNSNLDRIFTPPPEVYVSPFLSSSFDQVPAELEDWASENVMGAAARPLRPMSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPAIFLCNPGPNSSYKEFLDEEKNSALKHWALKNATFITLTGPLYSGSNQSAAQAGQEGDPASSR |
NCBI Accession
|
YP_009170681.1
|
Location
|
2163-2456 |
Gene Name
|
C4 |
Protein Name
|
C4 |
Coding Region
|
ATGGGGAACCTCATCTACACGTGCTCGTCCAATTCGAGGGGAAATATCAATGCACAAACAACAGATTCTTCGACCTCATTTCCCCAACCAGGTCAGCACATTTCCATCCAAACATTCAGAGAGCTAAGAGCTCTTCAGATGTCAAAGCCTATGTGGAGAAAGACGGAGACTTCATTGACTTTGGAGTTTTCCAGATCGATGGCAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAGTCTTCGGCCCTCAATATTTTAA |
Protein Sequence
|
MGNLIYTCSSNSRGNINAQTTDSSTSFPQPGQHISIQTFRELRALQMSKPMWRKTETSLTLEFSRSMADQLEEVANLPTTHMPRQSIQGPSLRPSIF |