Digitaria didactyla striate mosaic virus
Basic Information
Genus |
Mastrevirus
|
NCBI Assembly |
GCF_000889315.1 |
Isolate |
Australia |
Release date |
2015/2/22 |
Submitter |
Briddon,R.W., Martin,D.P., Owor,B.E., Donaldson,L., Markham,P.G., Greber,R.S., Varsani,A., Shepherd,D.N. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGCCCCCGGCCCATGGCGAGGGCCCTACGCTCAGCAGGGCCCGAGCGGCTTTACCTGCTTTGGTGTTCTTTAACTTGGATTTTCGCAGTGCGATCTGCCATCTGACCGGTTTTGTCTTTTAAAAGACCGCTCCCCCCCTTTGTTTCGAATGGCGACTCCGACATTTGATAGTGCATATTTTAGATCTGGATCTGTGGTTCAAAACCAAGACGGGACAAGCTTTGCTTTCCCGGTGAAGGTGACTGCCCTTGTCTGCATTTCTTCAATTGTAGCGGCCGCAATACTTGTATTTTTATACAAGACCTGTTTACAAGACTGCATAACGCAGTGGAGGCTTACGACATACGGCAGTCACTTTTCATCTGGTTTTGGAGGTACTCATTTGGTGACCTCAGGCCAGCCTGAGAGTAACCATACTCCCATTGTGAGTTTACCTGATAGATCTGCAGTTTCAGTGCCCCCTGTTTCGTTACCTGTTGGTTTGCAAACATCATGAGCCCTGCAGGCTCATATAAGAGGAAGCGCTCCGCCGCTTCGTCTTCAGCGACGCCAAAACGCCGTCGCGTCTATAAACAAGCAGTGAGTCGTCCTCTCTCAAGGAGAGAACCACTGCAGGTGCAAGATTTTACCTGGGAGCAAGATTCGGCGTTCAATGCAGGTGGCTCCGCCTACCTGCTTACAAGTTATGCCCGCGGTTCAGCTGAGAATCAGCGCAAGACCGCGGAGACGATCACCTACAAGGTGGCTATCAACCTTGGTGTTGCTATTAGTGGCACTATGCAACAATACTGTGTGTCGAGCCGGCCAGTGTGCTGGCTCGTTTACGATGCGGCACCGTCCGGCACGGCTGTGACGGCTCAAGAAATTTTCGGATTCCCTGATGGTTTGAAGAACTGGCCAACAACTTGGAAAGTGGCCAGATCGGTGTCCCACCGATTCATAGTGAAACGTCGGTGGGTGTTTACACTGGAGTCCAACGGCTCCAATTTTGCTACGGGGTACTCTAGTAACCCGTGTGCCATACCGCAATCCCTGCCGGTTCTGAACAAGTTCGCAAAGCAACTTGGCGTGCGGACGGAGTGGAAGAACACCGCAGGGGGAGACTTCGGCGACATTAAGAGCGGCGCTCTTTACTTAGTGTTGGCTCCGGCTAACGGATTAACTTTTGTAGCACGCGGAAATATCCGCATGTATTTTAAATCCGTCGGTAATCAGTGATTACCGTTCATGGTTTATGAATAATAAACACAGTTTGATGACAAGCTTGGCAAATTATTATTAAAATGAGGCATTATGCCGATTACAACATGGTTTTGTGTGTCGGGAGGGGGAACCCGGACCACGCACCCAAAACACTTAAATAAAACACACCCAACATTACATTATTAATATGCCGCCCTAGCGGAGAAGCTATGCTTCGACGTCCGACGAAGGAGGAATGAAAGACTCTCCTGCTTGAAGATAGTAGACCACACAGTTGCCGTGAAACCAGTCGGCTTGTTGAGGCGACATGGTTTGTAGCCAGTCTTCATCCTCGTTCGCGAGGATTATTGAAGGTATCCCATTCGGGATAGTCTTCTTTTTACCGTATTTTGGATTTACGGTTATGTCGAACTGGCTACCAACCAACCCCTTCCAACAAGGAACGAACTTGAACGGAATGTCATCTATGACATTATAGATGGCATTTTTATTCCACTCTGTGAGGAAATCTACAGAGTGTTGCCAGTAGTGGTGAGTTCCAAGACTTCTGGCCCAAGAAGTCTTTCCAGTTCTTGTTGGTCCACAGATATATAAGGATCGTCTTCGATGATGCGGACCTCGTTCCTGGTTACATCAGACATCCATTGGAGGTCAAGCTTTGCTTGTTCCTCCGATACTAATGCATGAACACTGTAAGCAGAGACACTTACAGTGAAGAACTCGGTATCGAGCCACTCTCCAATGACCGGATGGTCAGACATGTCGTTGGAGACGAACTGTGGCTGGTATTGTATCGGAGCTTCGGGGAAGAGCGCTTTGGCGCTGTATTCAAACTGTTGGAGACGGATTGCCCAGTCAAACGGAAATGCTTTCCGTATCATGGACAAATATTCGTCCCTGCTTGTGGCGTTAGCCATGATTTGTTTCATTTTTTTGTCACGGGTAAAGGAAGCTAGCTTCCTTTTCCTCGATGCCTTGGGCTTTACGAAGACCCCGTCTTCGTAGAAATCTGCCGGATTTTTCTGACAGTATTCCAGAGTTTTCTCTGGATTTCTTGCCGCCTGAATGTTAGGATGGAATTCAAAGAAATCAAAGTATTTGGCGGATGTGGTTCGGAAAACTTTGTCAAATTGAAGGAACGCATGTAAATGCGGTTCCCCATCTTGATGTAGCTCTTGAGCGATATACATATACTGTATATTATACCGCTTACAAAGTTTTTTGAGAAACGAACCAGCATCCTTTGGAGGGATTGGGCACCTTGGGTATGTCAGGAAGACATGTTGAGAGCGGACGTTGAAGCTTAGCGGCAGACTTGCCGCACTCTCCGAACTTGGATACTCGCCATAAGAGCGAGGATCGAACATGACTGAGTCACTGACAAGCTGGGACGACATAATAAAAGAGGACGTGGCTGAATGGAGAGCCGTAGGATCGTCTTTGAGATCCGATTTGTGAGTGAAACTCTCTTCCTACCAGTTTGCCAATGCCGAGTGCCAACCTACTCTTTTATAGGCCGCCGCCGCGACATGGGCCGAGGGGCAAACCAA
Gene Information
NCBI Accession
|
YP_003915157.1
|
Location
|
158-505 |
Protein Name
|
movement protein |
Coding Region
|
ATGGCGACTCCGACATTTGATAGTGCATATTTTAGATCTGGATCTGTGGTTCAAAACCAAGACGGGACAAGCTTTGCTTTCCCGGTGAAGGTGACTGCCCTTGTCTGCATTTCTTCAATTGTAGCGGCCGCAATACTTGTATTTTTATACAAGACCTGTTTACAAGACTGCATAACGCAGTGGAGGCTTACGACATACGGCAGTCACTTTTCATCTGGTTTTGGAGGTACTCATTTGGTGACCTCAGGCCAGCCTGAGAGTAACCATACTCCCATTGTGAGTTTACCTGATAGATCTGCAGTTTCAGTGCCCCCTGTTTCGTTACCTGTTGGTTTGCAAACATCATGA |
Protein Sequence
|
MATPTFDSAYFRSGSVVQNQDGTSFAFPVKVTALVCISSIVAAAILVFLYKTCLQDCITQWRLTTYGSHFSSGFGGTHLVTSGQPESNHTPIVSLPDRSAVSVPPVSLPVGLQTS |
NCBI Accession
|
YP_003915158.1
|
Location
|
502-1227 |
Protein Name
|
coat protein |
Coding Region
|
ATGAGCCCTGCAGGCTCATATAAGAGGAAGCGCTCCGCCGCTTCGTCTTCAGCGACGCCAAAACGCCGTCGCGTCTATAAACAAGCAGTGAGTCGTCCTCTCTCAAGGAGAGAACCACTGCAGGTGCAAGATTTTACCTGGGAGCAAGATTCGGCGTTCAATGCAGGTGGCTCCGCCTACCTGCTTACAAGTTATGCCCGCGGTTCAGCTGAGAATCAGCGCAAGACCGCGGAGACGATCACCTACAAGGTGGCTATCAACCTTGGTGTTGCTATTAGTGGCACTATGCAACAATACTGTGTGTCGAGCCGGCCAGTGTGCTGGCTCGTTTACGATGCGGCACCGTCCGGCACGGCTGTGACGGCTCAAGAAATTTTCGGATTCCCTGATGGTTTGAAGAACTGGCCAACAACTTGGAAAGTGGCCAGATCGGTGTCCCACCGATTCATAGTGAAACGTCGGTGGGTGTTTACACTGGAGTCCAACGGCTCCAATTTTGCTACGGGGTACTCTAGTAACCCGTGTGCCATACCGCAATCCCTGCCGGTTCTGAACAAGTTCGCAAAGCAACTTGGCGTGCGGACGGAGTGGAAGAACACCGCAGGGGGAGACTTCGGCGACATTAAGAGCGGCGCTCTTTACTTAGTGTTGGCTCCGGCTAACGGATTAACTTTTGTAGCACGCGGAAATATCCGCATGTATTTTAAATCCGTCGGTAATCAGTGA |
Protein Sequence
|
MSPAGSYKRKRSAASSSATPKRRRVYKQAVSRPLSRREPLQVQDFTWEQDSAFNAGGSAYLLTSYARGSAENQRKTAETITYKVAINLGVAISGTMQQYCVSSRPVCWLVYDAAPSGTAVTAQEIFGFPDGLKNWPTTWKVARSVSHRFIVKRRWVFTLESNGSNFATGYSSNPCAIPQSLPVLNKFAKQLGVRTEWKNTAGGDFGDIKSGALYLVLAPANGLTFVARGNIRMYFKSVGNQ |
NCBI Accession
|
YP_003915159.1
|
Location
|
1420-1839,1923-2609 |
Protein Name
|
replication associated protein |
Coding Region
|
ATGTCGTCCCAGCTTGTCAGTGACTCAGTCATGTTCGATCCTCGCTCTTATGGCGAGTATCCAAGTTCGGAGAGTGCGGCAAGTCTGCCGCTAAGCTTCAACGTCCGCTCTCAACATGTCTTCCTGACATACCCAAGGTGCCCAATCCCTCCAAAGGATGCTGGTTCGTTTCTCAAAAAACTTTGTAAGCGGTATAATATACAGTATATGTATATCGCTCAAGAGCTACATCAAGATGGGGAACCGCATTTACATGCGTTCCTTCAATTTGACAAAGTTTTCCGAACCACATCCGCCAAATACTTTGATTTCTTTGAATTCCATCCTAACATTCAGGCGGCAAGAAATCCAGAGAAAACTCTGGAATACTGTCAGAAAAATCCGGCAGATTTCTACGAAGACGGGGTCTTCGTAAAGCCCAAGGCATCGAGGAAAAGGAAGCTAGCTTCCTTTACCCGTGACAAAAAAATGAAACAAATCATGGCTAACGCCACAAGCAGGGACGAATATTTGTCCATGATACGGAAAGCATTTCCGTTTGACTGGGCAATCCGTCTCCAACAGTTTGAATACAGCGCCAAAGCGCTCTTCCCCGAAGCTCCGATACAATACCAGCCACAGTTCGTCTCCAACGACATGTCTGACCATCCGGTCATTGGAGAGTGGCTCGATACCGAGTTCTTCACTCAGGAACGAGGTCCGCATCATCGAAGACGATCCTTATATATCTGTGGACCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCACCACTACTGGCAACACTCTGTAGATTTCCTCACAGAGTGGAATAAAAATGCCATCTATAATGTCATAGATGACATTCCGTTCAAGTTCGTTCCTTGTTGGAAGGGGTTGGTTGGTAGCCAGTTCGACATAACCGTAAATCCAAAATACGGTAAAAAGAAGACTATCCCGAATGGGATACCTTCAATAATCCTCGCGAACGAGGATGAAGACTGGCTACAAACCATGTCGCCTCAACAAGCCGACTGGTTTCACGGCAACTGTGTGGTCTACTATCTTCAAGCAGGAGAGTCTTTCATTCCTCCTTCGTCGGACGTCGAAGCATAG |
Protein Sequence
|
MSSQLVSDSVMFDPRSYGEYPSSESAASLPLSFNVRSQHVFLTYPRCPIPPKDAGSFLKKLCKRYNIQYMYIAQELHQDGEPHLHAFLQFDKVFRTTSAKYFDFFEFHPNIQAARNPEKTLEYCQKNPADFYEDGVFVKPKASRKRKLASFTRDKKMKQIMANATSRDEYLSMIRKAFPFDWAIRLQQFEYSAKALFPEAPIQYQPQFVSNDMSDHPVIGEWLDTEFFTQERGPHHRRRSLYICGPTRTGKTSWARSLGTHHYWQHSVDFLTEWNKNAIYNVIDDIPFKFVPCWKGLVGSQFDITVNPKYGKKKTIPNGIPSIILANEDEDWLQTMSPQQADWFHGNCVVYYLQAGESFIPPSSDVEA |
NCBI Accession
|
YP_003915160.1
|
Location
|
1722-2609 |
Protein Name
|
RepA |
Coding Region
|
ATGTCGTCCCAGCTTGTCAGTGACTCAGTCATGTTCGATCCTCGCTCTTATGGCGAGTATCCAAGTTCGGAGAGTGCGGCAAGTCTGCCGCTAAGCTTCAACGTCCGCTCTCAACATGTCTTCCTGACATACCCAAGGTGCCCAATCCCTCCAAAGGATGCTGGTTCGTTTCTCAAAAAACTTTGTAAGCGGTATAATATACAGTATATGTATATCGCTCAAGAGCTACATCAAGATGGGGAACCGCATTTACATGCGTTCCTTCAATTTGACAAAGTTTTCCGAACCACATCCGCCAAATACTTTGATTTCTTTGAATTCCATCCTAACATTCAGGCGGCAAGAAATCCAGAGAAAACTCTGGAATACTGTCAGAAAAATCCGGCAGATTTCTACGAAGACGGGGTCTTCGTAAAGCCCAAGGCATCGAGGAAAAGGAAGCTAGCTTCCTTTACCCGTGACAAAAAAATGAAACAAATCATGGCTAACGCCACAAGCAGGGACGAATATTTGTCCATGATACGGAAAGCATTTCCGTTTGACTGGGCAATCCGTCTCCAACAGTTTGAATACAGCGCCAAAGCGCTCTTCCCCGAAGCTCCGATACAATACCAGCCACAGTTCGTCTCCAACGACATGTCTGACCATCCGGTCATTGGAGAGTGGCTCGATACCGAGTTCTTCACTGTAAGTGTCTCTGCTTACAGTGTTCATGCATTAGTATCGGAGGAACAAGCAAAGCTTGACCTCCAATGGATGTCTGATGTAACCAGGAACGAGGTCCGCATCATCGAAGACGATCCTTATATATCTGTGGACCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCACCACTACTGGCAACACTCTGTAG |
Protein Sequence
|
MSSQLVSDSVMFDPRSYGEYPSSESAASLPLSFNVRSQHVFLTYPRCPIPPKDAGSFLKKLCKRYNIQYMYIAQELHQDGEPHLHAFLQFDKVFRTTSAKYFDFFEFHPNIQAARNPEKTLEYCQKNPADFYEDGVFVKPKASRKRKLASFTRDKKMKQIMANATSRDEYLSMIRKAFPFDWAIRLQQFEYSAKALFPEAPIQYQPQFVSNDMSDHPVIGEWLDTEFFTVSVSAYSVHALVSEEQAKLDLQWMSDVTRNEVRIIEDDPYISVDQQELERLLGPEVLELTTTGNTL |