Digitaria ciliaris striate mosaic virus
Basic Information
| Genus |
Mastrevirus
|
| NCBI Assembly |
GCF_000900075.1 |
| Isolate |
Australia |
| Release date |
2015/2/22 |
| Submitter |
Kraberger,S., Thomas,J.E., Geering,A.D., Dayaram,A., Stainton,D., Hadfield,J., Walters,M., Parmenter,K.S., van Brunschot,S., Collings,D.A., Martin,D.P., Varsani,A., Geering,A., Parmenter,K. |
| Host |
|
| Vector |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATGGCGGAGTACCCTCAGTCTGCTTTGATTGTTTCTGGTGCGATTCCACGGCGAAGCCAGGACGAGAGCTTTGCCTCGTCTTTGAAGGTCACTGCTTTATCTTTGTTTGCAGCATTTATTGCTGCGTGTGTCTTGTCATTCATTTACAAGACCTGCATTGCGGATTTCATTACGCAATTCCGTTTATCCGGTTTAAGCAGTAGTACCTTCAATTCGGGCTTTGGGCGGACCGGTGAGGTTCCGCCAGCTGTCCCTACAAGGCCAGAATGTGAAGTTTCTATCCCCGTAAGGGAATCTGGTGTTTTGCTCGTGCTTTCAGGAGCTGCTTCCGTGGGTGGAGGTTGAGTCGTCATGCCTGCTTCGTCGAAGAGGAAGCGCGGGAGCAGTTCTGCTGGGAAGCGGCGTAAGAAGCCGCGGTACACGAAGTGGACTGGTTCCCGTTCCAGCGCTAGCCAGGATGCACTGCAGGTGCAGACCTTCCAATATGCTGAGGATCAGGCATTTAATGCAGGAGGACGTGCGCTGTTGCTCACGGCATTTACCCGCGGTTCTGCAGAGAACCAGCGGAAGTCCCAGGAGACCATTACGTACAAGGTTAGTGTTAGCCTTGGCGTTTCGGCATCTTCTACTGTACAGAAGTACTGCGTGAAGAGCCAGCCGATATGCTGGCTCGTGTACGATAAGACGCCTACTGGGATTGCTGACCTTGTCCCCTCGGACATTTTCGATGTGCCGAGTGGATTGACCAATTGGCCTTGTACCTGGAAGGTCAAGCGAGAAGTCTCGCACCGCTTTGTGGTGAAACGGCGCTGGCCGTTTACGTTGAGTTGCAACGGGAGTACCTTCACGGCGGATTACACGAAGCTGCCGGTGCCCAATACAGACAACCTGGTGTCCGTGAACCGGTTCGCCAAGGGATTAGGAGTGCGGACCGAGTGGAAGGATACGGTGTCTGCGGAGGCCTCCGACATTAAGGGTGGAGCCCTTTACATAGTTCTTGCCCCGGCTAACGGGGTTGTTTTCACCGCCCGCGGGGTAATTAAGGTGTACTTTAAGTCTGTGGGCAACCAGTAGCCCAGTGTAATGAGCCCCTTGGGCGAGTATTAATAAAACTCCAGTTTTATTATTGCACTTGTGCAGTGGCGGTACGACACAGAAAATACAACATTAACCTAAATTGGCGGCCAGATCGAAGGCGGCTAAGGGTTAGGACTCGAAAAAAAAAAACACACCCAACTCATATTAATGAAAATGCGCGGCGCGTGCCGACGGAGGAGTCACGCTGTAGCTGCGCCAAGGCTTTTGAAGAAAGTCTCTCCTTGGTACATGTAATGTACCTCGCAGTTAGCGTTAAACCAGTCAGCCTGACCAGGCTGCATTTGTTGGAGCCAGTCTTCGTCCTCGTTGGCGAGGATTATGCATGGGACTCCGTTGGAGAGCAGCCGTTTTTTGCCGTACTTTGGATTGACGGTGATGTCCCTCTGTGCTCCGACCAACCCCTTCCAACAAGGGACGAATTTGAAGGGGATGTCATCAATTACATTGTATTCAGCGTCGGGAATGATGTTGAGGAAGTCGACGCTGTGTTGCCAGTAGTTATGCTTGCCCAGACTTCTGGCCCAAGATGTCTTACCGGTACGAGTTGGTCCGCAGATGTAGAGGGATTTTCTTCGTTCAGCAGGGTTTCTGCCCTGCTGGTGTCATGCATCCATTGGAGGTCAGCTCTAGCTTGTTCCTCCGAAAGACCGGAGTGAATGCTGTAAGCATAGGGACTTACAGTGTACAGTTCTGCTCGGAGCCATGCTCCGAGCACTGGATGTTCTTCTTGGCTTGGCATGTTGAATGGGCTGACGTAGGGCGGAGGAGTAGAGGGGAACAGCCGTTCGGCTGAGTATTCAAAGTTTTGCAACCTTGTTGCCCAGTCGAATGGGAAGGTCTTCCTTACCATTGAGAGATACTCCTCCTTGCTCTTGGAGCTTCTGATGATATCCGCCATTTTGGCGTCCTTTGTTGTTGACGCGTCGATCTTGCGTTTGCGGACGTCGCTCTCCGTGTACGCCCCCTCCTCGGCGTACGATACCGGAGATTTCTTGCAGTATGCAAGGACTTTGTGGGGCATCCTTGCGTTTTGTACGTTGGGATGGTATTCTTCGAGGTCGAAGAAGCGTGCACGCGTAGTGCGTACGTGTTTCTTGCATTGCACGAAGCAATGCAGGTGGAAGGTGCCGTCTTGGTGTAGTTCTCTTGCCACGTATACATACGTAGGCTCAAACTTGCGAAGTTTGTGCGTGATGTCACGCAACGCTTCCTGTGGATCAAGCAAGCACTTGCTGTATGTTAGGAAGATGTTCTTGGCCCTCACCTCGAAGCTTGCTTCGGCAGCGCCCGGAGCGCGTTCGGCCAGTCGGCAGTTTGCCGAGTTTGCCGACTCTGTGTCACTGACAGGAGGAGCCATCTCGTCAGAAGCTAACGTGGATAGCTTCTTAGCCCTTGGATCAGCTTTGAGATCCGAGGTTTTGAGAAACTCTCTTCCTAGACCGCTGCCGACTGCCGAGTTCTCCCCCCGATAGCCCTTCTTATAGGGCCGGGGGGCATTGGTTTCCGTGTGGGCCGGCCCGGTAAAGAGGCAGCGCAATAATATTACCGCTGCCCTCTTTACCCGAGGGCCCCATGCTCAACGGGGACCGAGGTGCTTTCATGCCGGGCCCTATCAGCCCACTAAGGGCTGTTTCCCGCAATCTGATATCGATTTTTTGCTTTGACTGACATTTCTGCTTTGGATGCGGCTTTAAATAGACGCATCGCACTTCTTCGCC
Gene Information
|
NCBI Accession
|
YP_006666533.1
|
|
Location
|
1-345 |
|
Protein Name
|
movement protein |
|
Coding Region
|
ATGGCGGAGTACCCTCAGTCTGCTTTGATTGTTTCTGGTGCGATTCCACGGCGAAGCCAGGACGAGAGCTTTGCCTCGTCTTTGAAGGTCACTGCTTTATCTTTGTTTGCAGCATTTATTGCTGCGTGTGTCTTGTCATTCATTTACAAGACCTGCATTGCGGATTTCATTACGCAATTCCGTTTATCCGGTTTAAGCAGTAGTACCTTCAATTCGGGCTTTGGGCGGACCGGTGAGGTTCCGCCAGCTGTCCCTACAAGGCCAGAATGTGAAGTTTCTATCCCCGTAAGGGAATCTGGTGTTTTGCTCGTGCTTTCAGGAGCTGCTTCCGTGGGTGGAGGTTGA |
|
Protein Sequence
|
MAEYPQSALIVSGAIPRRSQDESFASSLKVTALSLFAAFIAACVLSFIYKTCIADFITQFRLSGLSSSTFNSGFGRTGEVPPAVPTRPECEVSIPVRESGVLLVLSGAASVGGG |
|
NCBI Accession
|
YP_006666534.1
|
|
Location
|
352-1074 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGCCTGCTTCGTCGAAGAGGAAGCGCGGGAGCAGTTCTGCTGGGAAGCGGCGTAAGAAGCCGCGGTACACGAAGTGGACTGGTTCCCGTTCCAGCGCTAGCCAGGATGCACTGCAGGTGCAGACCTTCCAATATGCTGAGGATCAGGCATTTAATGCAGGAGGACGTGCGCTGTTGCTCACGGCATTTACCCGCGGTTCTGCAGAGAACCAGCGGAAGTCCCAGGAGACCATTACGTACAAGGTTAGTGTTAGCCTTGGCGTTTCGGCATCTTCTACTGTACAGAAGTACTGCGTGAAGAGCCAGCCGATATGCTGGCTCGTGTACGATAAGACGCCTACTGGGATTGCTGACCTTGTCCCCTCGGACATTTTCGATGTGCCGAGTGGATTGACCAATTGGCCTTGTACCTGGAAGGTCAAGCGAGAAGTCTCGCACCGCTTTGTGGTGAAACGGCGCTGGCCGTTTACGTTGAGTTGCAACGGGAGTACCTTCACGGCGGATTACACGAAGCTGCCGGTGCCCAATACAGACAACCTGGTGTCCGTGAACCGGTTCGCCAAGGGATTAGGAGTGCGGACCGAGTGGAAGGATACGGTGTCTGCGGAGGCCTCCGACATTAAGGGTGGAGCCCTTTACATAGTTCTTGCCCCGGCTAACGGGGTTGTTTTCACCGCCCGCGGGGTAATTAAGGTGTACTTTAAGTCTGTGGGCAACCAGTAG |
|
Protein Sequence
|
MPASSKRKRGSSSAGKRRKKPRYTKWTGSRSSASQDALQVQTFQYAEDQAFNAGGRALLLTAFTRGSAENQRKSQETITYKVSVSLGVSASSTVQKYCVKSQPICWLVYDKTPTGIADLVPSDIFDVPSGLTNWPCTWKVKREVSHRFVVKRRWPFTLSCNGSTFTADYTKLPVPNTDNLVSVNRFAKGLGVRTEWKDTVSAEASDIKGGALYIVLAPANGVVFTARGVIKVYFKSVGNQ |
|
NCBI Accession
|
YP_006666535.1
|
|
Location
|
1278-1694,1778-2455 |
|
Protein Name
|
Rep |
|
Coding Region
|
ATGGCTCCTCCTGTCAGTGACACAGAGTCGGCAAACTCGGCAAACTGCCGACTGGCCGAACGCGCTCCGGGCGCTGCCGAAGCAAGCTTCGAGGTGAGGGCCAAGAACATCTTCCTAACATACAGCAAGTGCTTGCTTGATCCACAGGAAGCGTTGCGTGACATCACGCACAAACTTCGCAAGTTTGAGCCTACGTATGTATACGTGGCAAGAGAACTACACCAAGACGGCACCTTCCACCTGCATTGCTTCGTGCAATGCAAGAAACACGTACGCACTACGCGTGCACGCTTCTTCGACCTCGAAGAATACCATCCCAACGTACAAAACGCAAGGATGCCCCACAAAGTCCTTGCATACTGCAAGAAATCTCCGGTATCGTACGCCGAGGAGGGGGCGTACACGGAGAGCGACGTCCGCAAACGCAAGATCGACGCGTCAACAACAAAGGACGCCAAAATGGCGGATATCATCAGAAGCTCCAAGAGCAAGGAGGAGTATCTCTCAATGGTAAGGAAGACCTTCCCATTCGACTGGGCAACAAGGTTGCAAAACTTTGAATACTCAGCCGAACGGCTGTTCCCCTCTACTCCTCCGCCCTACGTCAGCCCATTCAACATGCCAAGCCAAGAAGAACATCCAGTGCTCGGAGCATGGCTCCGAGCAGAACTGTACACTCAGGGCAGAAACCCTGCTGAACGAAGAAAATCCCTCTACATCTGCGGACCAACTCGTACCGGTAAGACATCTTGGGCCAGAAGTCTGGGCAAGCATAACTACTGGCAACACAGCGTCGACTTCCTCAACATCATTCCCGACGCTGAATACAATGTAATTGATGACATCCCCTTCAAATTCGTCCCTTGTTGGAAGGGGTTGGTCGGAGCACAGAGGGACATCACCGTCAATCCAAAGTACGGCAAAAAACGGCTGCTCTCCAACGGAGTCCCATGCATAATCCTCGCCAACGAGGACGAAGACTGGCTCCAACAAATGCAGCCTGGTCAGGCTGACTGGTTTAACGCTAACTGCGAGGTACATTACATGTACCAAGGAGAGACTTTCTTCAAAAGCCTTGGCGCAGCTACAGCGTGA |
|
Protein Sequence
|
MAPPVSDTESANSANCRLAERAPGAAEASFEVRAKNIFLTYSKCLLDPQEALRDITHKLRKFEPTYVYVARELHQDGTFHLHCFVQCKKHVRTTRARFFDLEEYHPNVQNARMPHKVLAYCKKSPVSYAEEGAYTESDVRKRKIDASTTKDAKMADIIRSSKSKEEYLSMVRKTFPFDWATRLQNFEYSAERLFPSTPPPYVSPFNMPSQEEHPVLGAWLRAELYTQGRNPAERRKSLYICGPTRTGKTSWARSLGKHNYWQHSVDFLNIIPDAEYNVIDDIPFKFVPCWKGLVGAQRDITVNPKYGKKRLLSNGVPCIILANEDEDWLQQMQPGQADWFNANCEVHYMYQGETFFKSLGAATA |
|
NCBI Accession
|
YP_006666536.1
|
|
Location
|
1538-2455 |
|
Protein Name
|
RepA |
|
Coding Region
|
ATGGCTCCTCCTGTCAGTGACACAGAGTCGGCAAACTCGGCAAACTGCCGACTGGCCGAACGCGCTCCGGGCGCTGCCGAAGCAAGCTTCGAGGTGAGGGCCAAGAACATCTTCCTAACATACAGCAAGTGCTTGCTTGATCCACAGGAAGCGTTGCGTGACATCACGCACAAACTTCGCAAGTTTGAGCCTACGTATGTATACGTGGCAAGAGAACTACACCAAGACGGCACCTTCCACCTGCATTGCTTCGTGCAATGCAAGAAACACGTACGCACTACGCGTGCACGCTTCTTCGACCTCGAAGAATACCATCCCAACGTACAAAACGCAAGGATGCCCCACAAAGTCCTTGCATACTGCAAGAAATCTCCGGTATCGTACGCCGAGGAGGGGGCGTACACGGAGAGCGACGTCCGCAAACGCAAGATCGACGCGTCAACAACAAAGGACGCCAAAATGGCGGATATCATCAGAAGCTCCAAGAGCAAGGAGGAGTATCTCTCAATGGTAAGGAAGACCTTCCCATTCGACTGGGCAACAAGGTTGCAAAACTTTGAATACTCAGCCGAACGGCTGTTCCCCTCTACTCCTCCGCCCTACGTCAGCCCATTCAACATGCCAAGCCAAGAAGAACATCCAGTGCTCGGAGCATGGCTCCGAGCAGAACTGTACACTGTAAGTCCCTATGCTTACAGCATTCACTCCGGTCTTTCGGAGGAACAAGCTAGAGCTGACCTCCAATGGATGCATGACACCAGCAGGGCAGAAACCCTGCTGAACGAAGAAAATCCCTCTACATCTGCGGACCAACTCGTACCGGTAAGACATCTTGGGCCAGAAGTCTGGGCAAGCATAACTACTGGCAACACAGCGTCGACTTCCTCAACATCATTCCCGACGCTGAATACAATGTAA |
|
Protein Sequence
|
MAPPVSDTESANSANCRLAERAPGAAEASFEVRAKNIFLTYSKCLLDPQEALRDITHKLRKFEPTYVYVARELHQDGTFHLHCFVQCKKHVRTTRARFFDLEEYHPNVQNARMPHKVLAYCKKSPVSYAEEGAYTESDVRKRKIDASTTKDAKMADIIRSSKSKEEYLSMVRKTFPFDWATRLQNFEYSAERLFPSTPPPYVSPFNMPSQEEHPVLGAWLRAELYTVSPYAYSIHSGLSEEQARADLQWMHDTSRAETLLNEENPSTSADQLVPVRHLGPEVWASITTGNTASTSSTSFPTLNTM |