Chloris striate mosaic virus


Basic Information

Genus Mastrevirus
NCBI Assembly GCF_000839545.1
Release date 2015/2/12
Submitter Andersen,M.T., Richardson,K.A., Harbison,S.A., Morris,B.A.
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_001466
TAATAAAAGACGACGTGGCTTGATGGACAGCCGTAGGATGTGTTCTGAGATGTGGACTCCGAGCAAAACTATCTCTAATACCAGTTGCCCACCTGCCGAGTGCCCTCTTCGGCTTTTATGGGCCATAACAGGCCGGCTCTTTGCATGGGCGGGGGGGCAACCATAATATTACCGCCCCCCCGGCCCATGCGAGGGCCCATGCTCAACGGGTCCCGAGCGGCTTTGGCTTTCACATGGGCTTGTCCCCCGCGATGCGATCTGCTCTGCCATGCTTTGGCGGCTTTATAAAGCCGTTCTCAGACCTTTGTTTTCCAATGCAGTACCAGGGGTACGAGCAGCTCAGTAGATCTGGATCCGTGGAGCAACCCAGCCCCGGTGCTAGCTTTGCTTTCCCGGTGAAGGTGACAGCCCTCGTCTGTTTCGCAGCGATTGTTGGAGCCTGTATTCTTGTATTCTTGTACAAGACGTGCATTGCGGACTGCATAACGCAGTACCGGCTTACGGACTACGGCTGTCACACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGACCTCTGCGCAAGCTAGTGCTGGTACCAGCACCCCTGTGTGTGTTCCCTGTGCTCCTCAGGTACAGGCGTCCGTGGATCTACCCTCCGTAAGTAGGGTGTCATGAGTCCTGCCAGCTCATGGAAGAGGAAGAGGCCCTCTTCTTCCTCCGCTCAGGCGTCTAAGAAGCGCCGCGTGTACAGGCCTGCTGTTTCACGTTCTCTCGCTCGGCGAGAACCTCTGCAGGTGCAAGACTTTGTCTGGGATACAGATGTGGCTTTCAATAGGGGAGGAGGATGCTACCTCCTCACTAGCTATGCTCGAGGCTCTGCCGAGAATCAGCGGAAGACCGCTGAGACCATCACGTACAAGGTGGCAGTTAACCTGGGGTGTGCTATCTCCGGGACGATGCAGCAATATTGCATCAGCTCCCGACCGGTCTGCTGGATTGTATACGACGCGGCCCCCACTGGCTCTGCTGTTACCCCGAAGGACATCTTCGGGTACCCGGAAGGATTAGTTAACTGGCCTACTACTTGGAAGGTGGCCAGAGCGGTGTCCCACCGCTTCATAGTGAAGCGCCGATGGGTCTTCACCATGGAGTCCAACGGCTCGCGCTTCGACCGTGACTACACCAACCTCCCGGCTGCTATACCGCAGTCCCTTCCCGTTCTGAACAAGTTCGCGAAGCAGTTGGGCGTGCGGACCGAGTGGAAGAACGCTGAAGGCGGAGACTTCGGCGACATAAAGAGCGGAGCTCTTTACCTAGTCATGGCTCCGGCTAACGGAGCTGTCTTTGTAGCCCGCGGCAATGTCCGCGTGTATTTTAAGTCTGTTGGGAATCAGTGATTCCCCAGACTTCATTTTCAATAAACTGTGAGAGTTTGCTTGCCAAACAACATAATTTCATTCATAACGATGGCGCAGTATGCGCAATACATTTAAAAGAAGGGCGGACAGGACAAAGGCGGGCGGCTAAGGGAAGCCGCAAGGGGCAACACCACATCCCAAGAATGAGTTTTGGAATATGCAGCCGCTGGCTTCACGCTATTCCGAAGGAATGAAGGTTTCCCCTGGGAGAAGGTGATACACCACGGCGTTGCCGTGAAACCAGTCGACCTGTTGGGTCGACATCGACTGCAGCCAGTCTTCATCCTCGTTTACGAGGATAATACATGGAATCCCGTTGGGGATTCTTTTCTTCTTCCCGTACTTGGGGTTTACCGTCAGGTCATACTGGCTGCCGACGAGTCCCTTCCAACAAGGGACGAACTTGAACGGGATGTCATCAATGATGTTGAACTGGGCCTGGCAGTTCCATTCCTCTAGGAAGTTCACTGAGTGCTGCCAGTAGTGATGAGTTCCAAGACTTCTGGCCCAAGAAGTCTTTCCAGTTCTTGTTGGCCCACAGATGTACAGGCTTCGTCTCCGGACTCCAGGGCTCCAGACCTGGTTAGGTCAGACATCCATTGGAGGTCAATACGTGCTTGTTCCTCCGAAATACCTGCATGCAGACTGAGGGCTTGAGGACTTACAGTATACAGCTCCTGCTGGAGCCATTCTCCTATGACCGGATGGTCGGACATGTCCCTTGACGCGTATGGCGCGGAGTAGGTTTGAGGAGGGTCAGGGAACAGGGCATTTGCACTGTATTGGAATTGCTGTAGGCGTACCGCCCATTCGAAAGGGAAACTCTTTCGAACCATGCTCAGATATTCGTCCCTGGACGTGGCGTTTGCCATGATTTGTTTCATGGTCTTGTCCCTAGAGGCCGACTGGGTCGGACTCCTGTTGACCTTGGGTTTCAGGAATTTTCCAAATTCCCAGCTACTCTCAGGATGTTTCATACAGTATTTCAGAGTACTGGCTGGCTGCCTTGCAGCTTGGATATTTGGATGAAATTCATCCAGGTCAAAGTATTTTGGAGAGGTGGTTCTGAAATTTGCTTCGAGTTGGACGAAGGCATGTAAGTGGGGCTCACCGTCAGCATGGAATTCCCTGGAAATGTAAATATAATTACATTTCTTATTTTTTAGACGGTCAGCAATTTTCTGACCAGCCTCTTCGGGACTGATAGGACACCTGGGATAGGTGAGGAAGACATGTTTAGTCCTCAGGGAGAAGGCCTTCTCCCCAGGCGTCACTTGCCCTCCGCGAGATGGCACTTGTACGGAAGTGCCACTTCCCTCCCCCTCGCTCTCACTGACAGGCAGGGACGACA

Gene Information

NCBI Accession NP_597785.2
Location 1864-2748,1->126
Protein Name putative Rep A
Coding Region ATGGCCCATAAAAGCCGAAGAGGGCACTCGGCAGGTGGGCAACTGGTATTAGAGATAGTTTTGCTCGGAGTCCACATCTCAGAACACATCCTACGGCTGTCCATCAAGCCACGTCGTCTTTTATTATCGTCCCTGCCTGTCAGTGAGAGCGAGGGGGAGGGAAGTGGCACTTCCGTACAAGTGCCATCTCGCGGAGGGCAAGTGACGCCTGGGGAGAAGGCCTTCTCCCTGAGGACTAAACATGTCTTCCTCACCTATCCCAGGTGTCCTATCAGTCCCGAAGAGGCTGGTCAGAAAATTGCTGACCGTCTAAAAAATAAGAAATGTAATTATATTTACATTTCCAGGGAATTCCATGCTGACGGTGAGCCCCACTTACATGCCTTCGTCCAACTCGAAGCAAATTTCAGAACCACCTCTCCAAAATACTTTGACCTGGATGAATTTCATCCAAATATCCAAGCTGCAAGGCAGCCAGCCAGTACTCTGAAATACTGTATGAAACATCCTGAGAGTAGCTGGGAATTTGGAAAATTCCTGAAACCCAAGGTCAACAGGAGTCCGACCCAGTCGGCCTCTAGGGACAAGACCATGAAACAAATCATGGCAAACGCCACGTCCAGGGACGAATATCTGAGCATGGTTCGAAAGAGTTTCCCTTTCGAATGGGCGGTACGCCTACAGCAATTCCAATACAGTGCAAATGCCCTGTTCCCTGACCCTCCTCAAACCTACTCCGCGCCATACGCGTCAAGGGACATGTCCGACCATCCGGTCATAGGAGAATGGCTCCAGCAGGAGCTGTATACTGTAAGTCCTCAAGCCCTCAGTCTGCATGCAGGTATTTCGGAGGAACAAGCACGTATTGACCTCCAATGGATGTCTGACCTAACCAGGTCTGGAGCCCTGGAGTCCGGAGACGAAGCCTGTACATCTGTGGGCCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCATCACTACTGGCAGCACTCAGTGA
Protein Sequence MAHKSRRGHSAGGQLVLEIVLLGVHISEHILRLSIKPRRLLLSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTYPRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFDLDEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMANATSRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEWLQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSVGQQELERLLGPEVLELITTGSTQ

NCBI Accession NP_040950.1
Location 234-656
Protein Name Hypothetical 14.5 KDa protein
Coding Region ATGGGCTTGTCCCCCGCGATGCGATCTGCTCTGCCATGCTTTGGCGGCTTTATAAAGCCGTTCTCAGACCTTTGTTTTCCAATGCAGTACCAGGGGTACGAGCAGCTCAGTAGATCTGGATCCGTGGAGCAACCCAGCCCCGGTGCTAGCTTTGCTTTCCCGGTGAAGGTGACAGCCCTCGTCTGTTTCGCAGCGATTGTTGGAGCCTGTATTCTTGTATTCTTGTACAAGACGTGCATTGCGGACTGCATAACGCAGTACCGGCTTACGGACTACGGCTGTCACACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGACCTCTGCGCAAGCTAGTGCTGGTACCAGCACCCCTGTGTGTGTTCCCTGTGCTCCTCAGGTACAGGCGTCCGTGGATCTACCCTCCGTAAGTAGGGTGTCATGA
Protein Sequence MGLSPAMRSALPCFGGFIKPFSDLCFPMQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACILVFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAGTSTPVCVPCAPQVQASVDLPSVSRVS

NCBI Accession NP_040951.1
Location 315-656
Protein Name Hypothetical 11.7 KDa protein
Coding Region ATGCAGTACCAGGGGTACGAGCAGCTCAGTAGATCTGGATCCGTGGAGCAACCCAGCCCCGGTGCTAGCTTTGCTTTCCCGGTGAAGGTGACAGCCCTCGTCTGTTTCGCAGCGATTGTTGGAGCCTGTATTCTTGTATTCTTGTACAAGACGTGCATTGCGGACTGCATAACGCAGTACCGGCTTACGGACTACGGCTGTCACACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGACCTCTGCGCAAGCTAGTGCTGGTACCAGCACCCCTGTGTGTGTTCCCTGTGCTCCTCAGGTACAGGCGTCCGTGGATCTACCCTCCGTAAGTAGGGTGTCATGA
Protein Sequence MQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACILVFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAGTSTPVCVPCAPQVQASVDLPSVSRVS

NCBI Accession NP_040952.1
Location 653-1378
Protein Name coat protein
Coding Region ATGAGTCCTGCCAGCTCATGGAAGAGGAAGAGGCCCTCTTCTTCCTCCGCTCAGGCGTCTAAGAAGCGCCGCGTGTACAGGCCTGCTGTTTCACGTTCTCTCGCTCGGCGAGAACCTCTGCAGGTGCAAGACTTTGTCTGGGATACAGATGTGGCTTTCAATAGGGGAGGAGGATGCTACCTCCTCACTAGCTATGCTCGAGGCTCTGCCGAGAATCAGCGGAAGACCGCTGAGACCATCACGTACAAGGTGGCAGTTAACCTGGGGTGTGCTATCTCCGGGACGATGCAGCAATATTGCATCAGCTCCCGACCGGTCTGCTGGATTGTATACGACGCGGCCCCCACTGGCTCTGCTGTTACCCCGAAGGACATCTTCGGGTACCCGGAAGGATTAGTTAACTGGCCTACTACTTGGAAGGTGGCCAGAGCGGTGTCCCACCGCTTCATAGTGAAGCGCCGATGGGTCTTCACCATGGAGTCCAACGGCTCGCGCTTCGACCGTGACTACACCAACCTCCCGGCTGCTATACCGCAGTCCCTTCCCGTTCTGAACAAGTTCGCGAAGCAGTTGGGCGTGCGGACCGAGTGGAAGAACGCTGAAGGCGGAGACTTCGGCGACATAAAGAGCGGAGCTCTTTACCTAGTCATGGCTCCGGCTAACGGAGCTGTCTTTGTAGCCCGCGGCAATGTCCGCGTGTATTTTAAGTCTGTTGGGAATCAGTGA
Protein Sequence MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDFVWDTDVAFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSRPVCWIVYDAAPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNGSRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANGAVFVARGNVRVYFKSVGNQ

NCBI Accession NP_899201.1
Location 1577->1987
Protein Name putative Rep B
Coding Region CCTAACCAGGTCTGGAGCCCTGGAGTCCGGAGACGAAGCCTGTACATCTGTGGGCCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCATCACTACTGGCAGCACTCAGTGAACTTCCTAGAGGAATGGAACTGCCAGGCCCAGTTCAACATCATTGATGACATCCCGTTCAAGTTCGTCCCTTGTTGGAAGGGACTCGTCGGCAGCCAGTATGACCTGACGGTAAACCCCAAGTACGGGAAGAAGAAAAGAATCCCCAACGGGATTCCATGTATTATCCTCGTAAACGAGGATGAAGACTGGCTGCAGTCGATGTCGACCCAACAGGTCGACTGGTTTCACGGCAACGCCGTGGTGTATCACCTTCTCCCAGGGGAAACCTTCATTCCTTCGGAATAG
Protein Sequence PNQVWSPGVRRRSLYICGPTRTGKTSWARSLGTHHYWQHSVNFLEEWNCQAQFNIIDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLQSMSTQQVDWFHGNAVVYHLLPGETFIPSE