Chloris striate mosaic virus
Basic Information
Genus |
Mastrevirus
|
NCBI Assembly |
GCF_000839545.1 |
Release date |
2015/2/12 |
Submitter |
Andersen,M.T., Richardson,K.A., Harbison,S.A., Morris,B.A. |
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATAAAAGACGACGTGGCTTGATGGACAGCCGTAGGATGTGTTCTGAGATGTGGACTCCGAGCAAAACTATCTCTAATACCAGTTGCCCACCTGCCGAGTGCCCTCTTCGGCTTTTATGGGCCATAACAGGCCGGCTCTTTGCATGGGCGGGGGGGCAACCATAATATTACCGCCCCCCCGGCCCATGCGAGGGCCCATGCTCAACGGGTCCCGAGCGGCTTTGGCTTTCACATGGGCTTGTCCCCCGCGATGCGATCTGCTCTGCCATGCTTTGGCGGCTTTATAAAGCCGTTCTCAGACCTTTGTTTTCCAATGCAGTACCAGGGGTACGAGCAGCTCAGTAGATCTGGATCCGTGGAGCAACCCAGCCCCGGTGCTAGCTTTGCTTTCCCGGTGAAGGTGACAGCCCTCGTCTGTTTCGCAGCGATTGTTGGAGCCTGTATTCTTGTATTCTTGTACAAGACGTGCATTGCGGACTGCATAACGCAGTACCGGCTTACGGACTACGGCTGTCACACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGACCTCTGCGCAAGCTAGTGCTGGTACCAGCACCCCTGTGTGTGTTCCCTGTGCTCCTCAGGTACAGGCGTCCGTGGATCTACCCTCCGTAAGTAGGGTGTCATGAGTCCTGCCAGCTCATGGAAGAGGAAGAGGCCCTCTTCTTCCTCCGCTCAGGCGTCTAAGAAGCGCCGCGTGTACAGGCCTGCTGTTTCACGTTCTCTCGCTCGGCGAGAACCTCTGCAGGTGCAAGACTTTGTCTGGGATACAGATGTGGCTTTCAATAGGGGAGGAGGATGCTACCTCCTCACTAGCTATGCTCGAGGCTCTGCCGAGAATCAGCGGAAGACCGCTGAGACCATCACGTACAAGGTGGCAGTTAACCTGGGGTGTGCTATCTCCGGGACGATGCAGCAATATTGCATCAGCTCCCGACCGGTCTGCTGGATTGTATACGACGCGGCCCCCACTGGCTCTGCTGTTACCCCGAAGGACATCTTCGGGTACCCGGAAGGATTAGTTAACTGGCCTACTACTTGGAAGGTGGCCAGAGCGGTGTCCCACCGCTTCATAGTGAAGCGCCGATGGGTCTTCACCATGGAGTCCAACGGCTCGCGCTTCGACCGTGACTACACCAACCTCCCGGCTGCTATACCGCAGTCCCTTCCCGTTCTGAACAAGTTCGCGAAGCAGTTGGGCGTGCGGACCGAGTGGAAGAACGCTGAAGGCGGAGACTTCGGCGACATAAAGAGCGGAGCTCTTTACCTAGTCATGGCTCCGGCTAACGGAGCTGTCTTTGTAGCCCGCGGCAATGTCCGCGTGTATTTTAAGTCTGTTGGGAATCAGTGATTCCCCAGACTTCATTTTCAATAAACTGTGAGAGTTTGCTTGCCAAACAACATAATTTCATTCATAACGATGGCGCAGTATGCGCAATACATTTAAAAGAAGGGCGGACAGGACAAAGGCGGGCGGCTAAGGGAAGCCGCAAGGGGCAACACCACATCCCAAGAATGAGTTTTGGAATATGCAGCCGCTGGCTTCACGCTATTCCGAAGGAATGAAGGTTTCCCCTGGGAGAAGGTGATACACCACGGCGTTGCCGTGAAACCAGTCGACCTGTTGGGTCGACATCGACTGCAGCCAGTCTTCATCCTCGTTTACGAGGATAATACATGGAATCCCGTTGGGGATTCTTTTCTTCTTCCCGTACTTGGGGTTTACCGTCAGGTCATACTGGCTGCCGACGAGTCCCTTCCAACAAGGGACGAACTTGAACGGGATGTCATCAATGATGTTGAACTGGGCCTGGCAGTTCCATTCCTCTAGGAAGTTCACTGAGTGCTGCCAGTAGTGATGAGTTCCAAGACTTCTGGCCCAAGAAGTCTTTCCAGTTCTTGTTGGCCCACAGATGTACAGGCTTCGTCTCCGGACTCCAGGGCTCCAGACCTGGTTAGGTCAGACATCCATTGGAGGTCAATACGTGCTTGTTCCTCCGAAATACCTGCATGCAGACTGAGGGCTTGAGGACTTACAGTATACAGCTCCTGCTGGAGCCATTCTCCTATGACCGGATGGTCGGACATGTCCCTTGACGCGTATGGCGCGGAGTAGGTTTGAGGAGGGTCAGGGAACAGGGCATTTGCACTGTATTGGAATTGCTGTAGGCGTACCGCCCATTCGAAAGGGAAACTCTTTCGAACCATGCTCAGATATTCGTCCCTGGACGTGGCGTTTGCCATGATTTGTTTCATGGTCTTGTCCCTAGAGGCCGACTGGGTCGGACTCCTGTTGACCTTGGGTTTCAGGAATTTTCCAAATTCCCAGCTACTCTCAGGATGTTTCATACAGTATTTCAGAGTACTGGCTGGCTGCCTTGCAGCTTGGATATTTGGATGAAATTCATCCAGGTCAAAGTATTTTGGAGAGGTGGTTCTGAAATTTGCTTCGAGTTGGACGAAGGCATGTAAGTGGGGCTCACCGTCAGCATGGAATTCCCTGGAAATGTAAATATAATTACATTTCTTATTTTTTAGACGGTCAGCAATTTTCTGACCAGCCTCTTCGGGACTGATAGGACACCTGGGATAGGTGAGGAAGACATGTTTAGTCCTCAGGGAGAAGGCCTTCTCCCCAGGCGTCACTTGCCCTCCGCGAGATGGCACTTGTACGGAAGTGCCACTTCCCTCCCCCTCGCTCTCACTGACAGGCAGGGACGACA
Gene Information
NCBI Accession
|
NP_597785.2
|
Location
|
1864-2748,1->126 |
Protein Name
|
putative Rep A |
Coding Region
|
ATGGCCCATAAAAGCCGAAGAGGGCACTCGGCAGGTGGGCAACTGGTATTAGAGATAGTTTTGCTCGGAGTCCACATCTCAGAACACATCCTACGGCTGTCCATCAAGCCACGTCGTCTTTTATTATCGTCCCTGCCTGTCAGTGAGAGCGAGGGGGAGGGAAGTGGCACTTCCGTACAAGTGCCATCTCGCGGAGGGCAAGTGACGCCTGGGGAGAAGGCCTTCTCCCTGAGGACTAAACATGTCTTCCTCACCTATCCCAGGTGTCCTATCAGTCCCGAAGAGGCTGGTCAGAAAATTGCTGACCGTCTAAAAAATAAGAAATGTAATTATATTTACATTTCCAGGGAATTCCATGCTGACGGTGAGCCCCACTTACATGCCTTCGTCCAACTCGAAGCAAATTTCAGAACCACCTCTCCAAAATACTTTGACCTGGATGAATTTCATCCAAATATCCAAGCTGCAAGGCAGCCAGCCAGTACTCTGAAATACTGTATGAAACATCCTGAGAGTAGCTGGGAATTTGGAAAATTCCTGAAACCCAAGGTCAACAGGAGTCCGACCCAGTCGGCCTCTAGGGACAAGACCATGAAACAAATCATGGCAAACGCCACGTCCAGGGACGAATATCTGAGCATGGTTCGAAAGAGTTTCCCTTTCGAATGGGCGGTACGCCTACAGCAATTCCAATACAGTGCAAATGCCCTGTTCCCTGACCCTCCTCAAACCTACTCCGCGCCATACGCGTCAAGGGACATGTCCGACCATCCGGTCATAGGAGAATGGCTCCAGCAGGAGCTGTATACTGTAAGTCCTCAAGCCCTCAGTCTGCATGCAGGTATTTCGGAGGAACAAGCACGTATTGACCTCCAATGGATGTCTGACCTAACCAGGTCTGGAGCCCTGGAGTCCGGAGACGAAGCCTGTACATCTGTGGGCCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCATCACTACTGGCAGCACTCAGTGA |
Protein Sequence
|
MAHKSRRGHSAGGQLVLEIVLLGVHISEHILRLSIKPRRLLLSSLPVSESEGEGSGTSVQVPSRGGQVTPGEKAFSLRTKHVFLTYPRCPISPEEAGQKIADRLKNKKCNYIYISREFHADGEPHLHAFVQLEANFRTTSPKYFDLDEFHPNIQAARQPASTLKYCMKHPESSWEFGKFLKPKVNRSPTQSASRDKTMKQIMANATSRDEYLSMVRKSFPFEWAVRLQQFQYSANALFPDPPQTYSAPYASRDMSDHPVIGEWLQQELYTVSPQALSLHAGISEEQARIDLQWMSDLTRSGALESGDEACTSVGQQELERLLGPEVLELITTGSTQ |
NCBI Accession
|
NP_040950.1
|
Location
|
234-656 |
Protein Name
|
Hypothetical 14.5 KDa protein |
Coding Region
|
ATGGGCTTGTCCCCCGCGATGCGATCTGCTCTGCCATGCTTTGGCGGCTTTATAAAGCCGTTCTCAGACCTTTGTTTTCCAATGCAGTACCAGGGGTACGAGCAGCTCAGTAGATCTGGATCCGTGGAGCAACCCAGCCCCGGTGCTAGCTTTGCTTTCCCGGTGAAGGTGACAGCCCTCGTCTGTTTCGCAGCGATTGTTGGAGCCTGTATTCTTGTATTCTTGTACAAGACGTGCATTGCGGACTGCATAACGCAGTACCGGCTTACGGACTACGGCTGTCACACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGACCTCTGCGCAAGCTAGTGCTGGTACCAGCACCCCTGTGTGTGTTCCCTGTGCTCCTCAGGTACAGGCGTCCGTGGATCTACCCTCCGTAAGTAGGGTGTCATGA |
Protein Sequence
|
MGLSPAMRSALPCFGGFIKPFSDLCFPMQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACILVFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAGTSTPVCVPCAPQVQASVDLPSVSRVS |
NCBI Accession
|
NP_040951.1
|
Location
|
315-656 |
Protein Name
|
Hypothetical 11.7 KDa protein |
Coding Region
|
ATGCAGTACCAGGGGTACGAGCAGCTCAGTAGATCTGGATCCGTGGAGCAACCCAGCCCCGGTGCTAGCTTTGCTTTCCCGGTGAAGGTGACAGCCCTCGTCTGTTTCGCAGCGATTGTTGGAGCCTGTATTCTTGTATTCTTGTACAAGACGTGCATTGCGGACTGCATAACGCAGTACCGGCTTACGGACTACGGCTGTCACACTTCGGCTGGGTTCGGAGGTGCGTTACCCGTGACCTCTGCGCAAGCTAGTGCTGGTACCAGCACCCCTGTGTGTGTTCCCTGTGCTCCTCAGGTACAGGCGTCCGTGGATCTACCCTCCGTAAGTAGGGTGTCATGA |
Protein Sequence
|
MQYQGYEQLSRSGSVEQPSPGASFAFPVKVTALVCFAAIVGACILVFLYKTCIADCITQYRLTDYGCHTSAGFGGALPVTSAQASAGTSTPVCVPCAPQVQASVDLPSVSRVS |
NCBI Accession
|
NP_040952.1
|
Location
|
653-1378 |
Protein Name
|
coat protein |
Coding Region
|
ATGAGTCCTGCCAGCTCATGGAAGAGGAAGAGGCCCTCTTCTTCCTCCGCTCAGGCGTCTAAGAAGCGCCGCGTGTACAGGCCTGCTGTTTCACGTTCTCTCGCTCGGCGAGAACCTCTGCAGGTGCAAGACTTTGTCTGGGATACAGATGTGGCTTTCAATAGGGGAGGAGGATGCTACCTCCTCACTAGCTATGCTCGAGGCTCTGCCGAGAATCAGCGGAAGACCGCTGAGACCATCACGTACAAGGTGGCAGTTAACCTGGGGTGTGCTATCTCCGGGACGATGCAGCAATATTGCATCAGCTCCCGACCGGTCTGCTGGATTGTATACGACGCGGCCCCCACTGGCTCTGCTGTTACCCCGAAGGACATCTTCGGGTACCCGGAAGGATTAGTTAACTGGCCTACTACTTGGAAGGTGGCCAGAGCGGTGTCCCACCGCTTCATAGTGAAGCGCCGATGGGTCTTCACCATGGAGTCCAACGGCTCGCGCTTCGACCGTGACTACACCAACCTCCCGGCTGCTATACCGCAGTCCCTTCCCGTTCTGAACAAGTTCGCGAAGCAGTTGGGCGTGCGGACCGAGTGGAAGAACGCTGAAGGCGGAGACTTCGGCGACATAAAGAGCGGAGCTCTTTACCTAGTCATGGCTCCGGCTAACGGAGCTGTCTTTGTAGCCCGCGGCAATGTCCGCGTGTATTTTAAGTCTGTTGGGAATCAGTGA |
Protein Sequence
|
MSPASSWKRKRPSSSSAQASKKRRVYRPAVSRSLARREPLQVQDFVWDTDVAFNRGGGCYLLTSYARGSAENQRKTAETITYKVAVNLGCAISGTMQQYCISSRPVCWIVYDAAPTGSAVTPKDIFGYPEGLVNWPTTWKVARAVSHRFIVKRRWVFTMESNGSRFDRDYTNLPAAIPQSLPVLNKFAKQLGVRTEWKNAEGGDFGDIKSGALYLVMAPANGAVFVARGNVRVYFKSVGNQ |
NCBI Accession
|
NP_899201.1
|
Location
|
1577->1987 |
Protein Name
|
putative Rep B |
Coding Region
|
CCTAACCAGGTCTGGAGCCCTGGAGTCCGGAGACGAAGCCTGTACATCTGTGGGCCAACAAGAACTGGAAAGACTTCTTGGGCCAGAAGTCTTGGAACTCATCACTACTGGCAGCACTCAGTGAACTTCCTAGAGGAATGGAACTGCCAGGCCCAGTTCAACATCATTGATGACATCCCGTTCAAGTTCGTCCCTTGTTGGAAGGGACTCGTCGGCAGCCAGTATGACCTGACGGTAAACCCCAAGTACGGGAAGAAGAAAAGAATCCCCAACGGGATTCCATGTATTATCCTCGTAAACGAGGATGAAGACTGGCTGCAGTCGATGTCGACCCAACAGGTCGACTGGTTTCACGGCAACGCCGTGGTGTATCACCTTCTCCCAGGGGAAACCTTCATTCCTTCGGAATAG |
Protein Sequence
|
PNQVWSPGVRRRSLYICGPTRTGKTSWARSLGTHHYWQHSVNFLEEWNCQAQFNIIDDIPFKFVPCWKGLVGSQYDLTVNPKYGKKKRIPNGIPCIILVNEDEDWLQSMSTQQVDWFHGNAVVYHLLPGETFIPSE |