Chenopodium leaf curl virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002821805.1
Isolate USA: Florida, Citra
Release date 2018/8/25
Submitter Ng,T.F., Duffy,S., Polston,J.E., Bixby,E., Vallad,G.E., Breitbart,M., Ng,T.F.F., Vallad,G.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038440
ACTGGATGGCCGCGCGATTTTTGGAGTCCTTTACTCTGGAGAGGCCCATTTCGCTACCGGCCCACACTTTAATTTAAAGTAAAGTCTATTTCGTCCATTCATAGTGAGTCTGACGAGCGTAGATATCCGGACCTACTTGGTCGCTAAGTTAGTGGGTGCAGTTATAAATTAAAGTGTCATTGGCCCACGCTCTTTAACTCAAAATGCCTAAGAGGGAAGCCCCATGGCGATTACTGGCGGGAACCTCGAAGGTTAGCCGAAATGCGAAATATTCTACCCGTCTAGGAAGTGGGCCAACATTTAACAAGGCCACTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATATACCGGATGATCCGTACTCCAGATGTGCCCAGAGGGTGTGAAGGGCCTTGTAAAGTCCAGTCATTCGAACAGCGACATGATGTGTCACATACTGGGAAAGTGATATGCATATCCGACGTGACACGGGGTAATGGTATAACCCACCGTGTTGGTAAGCGATTCTGTGTTAAGTCCGTGTACATTCTGGGCAAGATATGGATGGATGAGAACATCAAGTTGAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTTAGGGATCGAAGACCGTATGGTACTCCCATGGATTTCGGTCAGGTGTTCAACATGTTCGACAATGAGCCTAGCACTGCTACTGTGAAGAACGATCTACGTGATCGTTATCAGGTCATGCACCGGTTCTATGGCAAGGTTACGGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGCTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAAGCTGGGAAGTACGAGAACCACACGGAGAACGCGCTATTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTATATGCAACTTTGAAGATCCGAATCTATTTCTATGATTCGATTATGAATTAATAAATTTTGAATTTTATTGAATGTCTAAAGAGCACATTAGTTACATAAGACCGGTCTGTCGCAAAACTAGCAGCCCTAATTACATTGTTTATGGAAATAACGCCTAACTGATCTAAATACATATTAACTAATTGCCTAAATCTATTTAAGTACGTCGTCCCAGAAGCTGTCAGAGAAGTCGTCCAGACTTGGAAGGTTAAGAAGGCCTTGTGGAGATCCAACACTCTCCGCAGGTTGTGGTTTGCCCTGATCTGGATGTGGTACACTCTGCTGGACGTGTACGCCGGTTCCTCCACCCTGTCTATCCTGAAATAGAGGGGATTTTCGATCTCCCATATAAAAACGCCATTCTCCGCTTGAGCTGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGCCCGGAACAGCCAATATGCACGTATATGGAGCACCCGCAATCTAAATCAATCCTGCGCCTCCTGATCCCCCTCTTCTTGGCTATCTTGTGCGCTATCTTGATAGAGGGGGGATGTGAGGGTGATGAAGACCGCATTTTTTATTGTCCAGTTCTTTAGTGATGTGTTTTCAATTTTGTCCAAGAACTCCTTATAACTGGCACCCTCACCAGGATTGCAAAGCACGATAGACGGTATCCCGCCTTTAATTTGAACTGGCCTGCCGTACTTGCAGTTTGATTGCCAGTCCTTCTGGGCCCCCAGAAGTTCTTTCCAGTGCTTTAATTTTAGATATTGCGGTGCGACGTCATCGATGACGTTATACTCCACTTCGTTAGAATAAACCCGGGCATTGAAATCAAGGTGACCACTGAGATAATTATGTGGACCCAAGGCACGAGCCCACATCGTCTTTCCCGTCCTTGAGTCACCTTCGACGATTATACTTATCGGTCTTTCTGGCCGCGCAGCGACGCCGTTTCCGAAGTAATCATCCGCCCAAGCTTGCATATCTACTGGAACGTTAGTGAACGACGAGAGAGGAAACGGAGGAACCCATCGTTCAGGAGGTTTGTGAAATAGGCGCTCAATGTTAGCCTTGACGTTGTGATAGCTAACGATAAACGTCTTTGGGTCTCCCGCCTTTATAATGTCGAGAGCCTCTCTCGCAGTAGTTGCATTAACAGCGTTGTGATACACGTCGTCTTTATTCGCCTTTGAACCCCCAGACACTTTGTATTGTCCGGATTCACAATAATCACCTTCCTTGGTGATGTAATTCTTGACGGCGTTGGTGTCTTTAGCGCCTTGGACGTTCGGGTGAAATCCGGCAGACCTTCTGGGGTGAGTGAGGTCGAAAAATCTAGCATCCTTGATGTTGGACTTACCGGAGAGTTGGATGAGACAGTGTAAATGAGGGAACCCATCTGCGTGTTCCTCTCTTGCGACTCTGATGTATGTAGGTTTGACGACTGACCAAGGCAGGGATTGAAGCAAGAGAAGAGCTTCATCTTTGGGTATGTCGCACTGGGGATATGTTAAGAAAATATTTCTAGCTTGGATACGAAAGGAATTAGGGTTTCGTGGCATTTTTGTAATTTATGAAGAGGACTCCAGACCAGGACTCCGGGTTTCCTCTCCTCAAAAACTTAATATTCGTGGAGTCCTGGAGTCCCATTTATACTAAAACCCTCTGGGGGACTCCAGGGGCAAAAGCGGCCATCCATATAATATT

Gene Information

NCBI Accession YP_009506378.1
Location 194-637
Gene Name AC5
Protein Name AC5 protein
Coding Region ATGGGAGTACCATACGGTCTTCGATCCCTAACCAACCAGAACATAACACTGTTCGTGTGGTTCTTCAACTTGATGTTCTCATCCATCCATATCTTGCCCAGAATGTACACGGACTTAACACAGAATCGCTTACCAACACGGTGGGTTATACCATTACCCCGTGTCACGTCGGATATGCATATCACTTTCCCAGTATGTGACACATCATGTCGCTGTTCGAATGACTGGACTTTACAAGGCCCTTCACACCCTCTGGGCACATCTGGAGTACGGATCATCCGGTATATCCTGGGCTTCCTGTACATGGGCCTGTTCACCCATTCAGTGGCCTTGTTAAATGTTGGCCCACTTCCTAGACGGGTAGAATATTTCGCATTTCGGCTAACCTTCGAGGTTCCCGCCAGTAATCGCCATGGGGCTTCCCTCTTAGGCATTTTGAGTTAA
Protein Sequence MGVPYGLRSLTNQNITLFVWFFNLMFSSIHILPRMYTDLTQNRLPTRWVIPLPRVTSDMHITFPVCDTSCRCSNDWTLQGPSHPLGTSGVRIIRYILGFLYMGLFTHSVALLNVGPLPRRVEYFAFRLTFEVPASNRHGASLLGILS

NCBI Accession YP_009506379.1
Location 204-959
Gene Name CP/AV1
Protein Name coat protein
Coding Region ATGCCTAAGAGGGAAGCCCCATGGCGATTACTGGCGGGAACCTCGAAGGTTAGCCGAAATGCGAAATATTCTACCCGTCTAGGAAGTGGGCCAACATTTAACAAGGCCACTGAATGGGTGAACAGGCCCATGTACAGGAAGCCCAGGATATACCGGATGATCCGTACTCCAGATGTGCCCAGAGGGTGTGAAGGGCCTTGTAAAGTCCAGTCATTCGAACAGCGACATGATGTGTCACATACTGGGAAAGTGATATGCATATCCGACGTGACACGGGGTAATGGTATAACCCACCGTGTTGGTAAGCGATTCTGTGTTAAGTCCGTGTACATTCTGGGCAAGATATGGATGGATGAGAACATCAAGTTGAAGAACCACACGAACAGTGTTATGTTCTGGTTGGTTAGGGATCGAAGACCGTATGGTACTCCCATGGATTTCGGTCAGGTGTTCAACATGTTCGACAATGAGCCTAGCACTGCTACTGTGAAGAACGATCTACGTGATCGTTATCAGGTCATGCACCGGTTCTATGGCAAGGTTACGGGTGGACAGTATGCCAGCAACGAGCAGGCTATAGTCAAGCGCTTCTGGAAGGTCAACAATCATGTGGTGTACAATCACCAGGAAGCTGGGAAGTACGAGAACCACACGGAGAACGCGCTATTATTGTATATGGCATGTACTCATGCCTCTAATCCTGTATATGCAACTTTGAAGATCCGAATCTATTTCTATGATTCGATTATGAATTAA
Protein Sequence MPKREAPWRLLAGTSKVSRNAKYSTRLGSGPTFNKATEWVNRPMYRKPRIYRMIRTPDVPRGCEGPCKVQSFEQRHDVSHTGKVICISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHRFYGKVTGGQYASNEQAIVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIMN

NCBI Accession YP_009506380.1
Location 956-1354
Gene Name REn/AC3
Protein Name replication enhancer
Coding Region ATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGGAGAATGGCGTTTTTATATGGGAGATCGAAAATCCCCTCTATTTCAGGATAGACAGGGTGGAGGAACCGGCGTACACGTCCAGCAGAGTGTACCACATCCAGATCAGGGCAAACCACAACCTGCGGAGAGTGTTGGATCTCCACAAGGCCTTCTTAACCTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGACGACGTACTTAAATAGATTTAGGCAATTAGTTAATATGTATTTAGATCAGTTAGGCGTTATTTCCATAAACAATGTAATTAGGGCTGCTAGTTTTGCGACAGACCGGTCTTATGTAACTAATGTGCTCTTTAGACATTCAATAAAATTCAAAATTTATTAA
Protein Sequence MDSRTGELITAAQAENGVFIWEIENPLYFRIDRVEEPAYTSSRVYHIQIRANHNLRRVLDLHKAFLTFQVWTTSLTASGTTYLNRFRQLVNMYLDQLGVISINNVIRAASFATDRSYVTNVLFRHSIKFKIY

NCBI Accession YP_009506381.1
Location 1101-1490
Gene Name TrAP/AC2
Protein Name transcription activator
Coding Region ATGCGGTCTTCATCACCCTCACATCCCCCCTCTATCAAGATAGCGCACAAGATAGCCAAGAAGAGGGGGATCAGGAGGCGCAGGATTGATTTAGATTGCGGGTGCTCCATATACGTGCATATTGGCTGTTCCGGGCATGGATTCACGCACAGGGGAACTCATCACTGCAGCTCAAGCGGAGAATGGCGTTTTTATATGGGAGATCGAAAATCCCCTCTATTTCAGGATAGACAGGGTGGAGGAACCGGCGTACACGTCCAGCAGAGTGTACCACATCCAGATCAGGGCAAACCACAACCTGCGGAGAGTGTTGGATCTCCACAAGGCCTTCTTAACCTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGACGACGTACTTAAATAG
Protein Sequence MRSSSPSHPPSIKIAHKIAKKRGIRRRRIDLDCGCSIYVHIGCSGHGFTHRGTHHCSSSGEWRFYMGDRKSPLFQDRQGGGTGVHVQQSVPHPDQGKPQPAESVGSPQGLLNLPSLDDFSDSFWDDVLK

NCBI Accession YP_009506382.1
Location 1402-2481
Gene Name Rep/AC1
Protein Name replication initiator protein
Coding Region ATGCCACGAAACCCTAATTCCTTTCGTATCCAAGCTAGAAATATTTTCTTAACATATCCCCAGTGCGACATACCCAAAGATGAAGCTCTTCTCTTGCTTCAATCCCTGCCTTGGTCAGTCGTCAAACCTACATACATCAGAGTCGCAAGAGAGGAACACGCAGATGGGTTCCCTCATTTACACTGTCTCATCCAACTCTCCGGTAAGTCCAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCGGATTTCACCCGAACGTCCAAGGCGCTAAAGACACCAACGCCGTCAAGAATTACATCACCAAGGAAGGTGATTATTGTGAATCCGGACAATACAAAGTGTCTGGGGGTTCAAAGGCGAATAAAGACGACGTGTATCACAACGCTGTTAATGCAACTACTGCGAGAGAGGCTCTCGACATTATAAAGGCGGGAGACCCAAAGACGTTTATCGTTAGCTATCACAACGTCAAGGCTAACATTGAGCGCCTATTTCACAAACCTCCTGAACGATGGGTTCCTCCGTTTCCTCTCTCGTCGTTCACTAACGTTCCAGTAGATATGCAAGCTTGGGCGGATGATTACTTCGGAAACGGCGTCGCTGCGCGGCCAGAAAGACCGATAAGTATAATCGTCGAAGGTGACTCAAGGACGGGAAAGACGATGTGGGCTCGTGCCTTGGGTCCACATAATTATCTCAGTGGTCACCTTGATTTCAATGCCCGGGTTTATTCTAACGAAGTGGAGTATAACGTCATCGATGACGTCGCACCGCAATATCTAAAATTAAAGCACTGGAAAGAACTTCTGGGGGCCCAGAAGGACTGGCAATCAAACTGCAAGTACGGCAGGCCAGTTCAAATTAAAGGCGGGATACCGTCTATCGTGCTTTGCAATCCTGGTGAGGGTGCCAGTTATAAGGAGTTCTTGGACAAAATTGAAAACACATCACTAAAGAACTGGACAATAAAAAATGCGGTCTTCATCACCCTCACATCCCCCCTCTATCAAGATAGCGCACAAGATAGCCAAGAAGAGGGGGATCAGGAGGCGCAGGATTGA
Protein Sequence MPRNPNSFRIQARNIFLTYPQCDIPKDEALLLLQSLPWSVVKPTYIRVAREEHADGFPHLHCLIQLSGKSNIKDARFFDLTHPRRSAGFHPNVQGAKDTNAVKNYITKEGDYCESGQYKVSGGSKANKDDVYHNAVNATTAREALDIIKAGDPKTFIVSYHNVKANIERLFHKPPERWVPPFPLSSFTNVPVDMQAWADDYFGNGVAARPERPISIIVEGDSRTGKTMWARALGPHNYLSGHLDFNARVYSNEVEYNVIDDVAPQYLKLKHWKELLGAQKDWQSNCKYGRPVQIKGGIPSIVLCNPGEGASYKEFLDKIENTSLKNWTIKNAVFITLTSPLYQDSAQDSQEEGDQEAQD

NCBI Accession YP_009506383.1
Location 2037-2402
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAAGCTCTTCTCTTGCTTCAATCCCTGCCTTGGTCAGTCGTCAAACCTACATACATCAGAGTCGCAAGAGAGGAACACGCAGATGGGTTCCCTCATTTACACTGTCTCATCCAACTCTCCGGTAAGTCCAACATCAAGGATGCTAGATTTTTCGACCTCACTCACCCCAGAAGGTCTGCCGGATTTCACCCGAACGTCCAAGGCGCTAAAGACACCAACGCCGTCAAGAATTACATCACCAAGGAAGGTGATTATTGTGAATCCGGACAATACAAAGTGTCTGGGGGTTCAAAGGCGAATAAAGACGACGTGTATCACAACGCTGTTAATGCAACTACTGCGAGAGAGGCTCTCGACATTATAA
Protein Sequence MKLFSCFNPCLGQSSNLHTSESQERNTQMGSLIYTVSSNSPVSPTSRMLDFSTSLTPEGLPDFTRTSKALKTPTPSRITSPRKVIIVNPDNTKCLGVQRRIKTTCITTLLMQLLRERLSTL