Bromus catharticus striate mosaic virus
Basic Information
Genus |
Mastrevirus
|
NCBI Assembly |
GCF_000890415.1 |
Isolate |
Australia |
Release date |
2015/2/22 |
Submitter |
Hadfield,J., Martin,D.P., Stainton,D., Kraberger,S., Owor,B.E., Shepherd,D.N., Lakay,F., Markham,P.G., Greber,R.S., Briddon,R.W., Varsani,A., Hatfield,J. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGCCCATCTTTAGCCGAGGGACCATGCCCAACCGGTCCCGAGGCGCCCGGACCCCCCAAACACTAGGGGTTGCACCCCGCAATATGATTTTCGAATCTGACTGCCATCTTCCTTTGTTTTGTCTTTATAAGACTAGATCGCACTAGTACGCTATGGCGGAGTACCCTCAGTCTGCTTTCGTTTTATCTGGTGCGATTCCACATCAAAGCAAGGACGAAGGCTTTGCCTCGTCTTTGAAGGTTACTGCTCTATCTTTGTTCGCAGCATTCATTGCTGCTGCCATCTTGTGTTTCCTATACAAGACTTGTCTTGCAGATTGCTATACGCAATACCGGACTACCGGTCTGAGCAGTACATCTTCATCTGGCTTTGGTCGAACCTCTGAGGCTTCGACAGCTGTCCCGCGGACAGCGTCTGAGGTTTCTATTCCCTTAGGGGATAGATCTGCTACTCCATCTTCCTGTTTACCTACATCTGGTATTTCATCTATTTGATTTGTCATGACGTCTTCCTCGAAGAGGAAACGTGGATCTGGTAAGACGAAGACGCGCAAGAAGGCGCGTTACACGAAGTGGACATCATCGAGAACAACGTCAGCTGCAGACTCTCTGCAGGTACAGACGTTCCTGTGGGCTGAGGATCAGTCCTTCAATACTGGTGGAGGTTGCAGACTGCTAACCTCCTTCACGCGTGGTTCAGGAGAGAACCAACGCAAATCCCAGGAGACCATTACGTACAAGGTTGCCGTCAACCTTGGCATCTCCGCCTCCACTACCGTTCAGAAGTATTGCCTGACCAGCCATCCTATATGTTGGCTGGTCTACGATAAGACGCCTGGGATTGCTGACCTGACTCCAACTGACATCTTTGATGTCCCGACTGGGTTGAACAACTGGCCTTCAACCTGGAAGGTCAAGCGCGAAGCATCTCACCGCTTCGTGGTGAAACGGCGCTGGCCGTTTAGACTGTCCGTCAATGGCTCTACGTTCTCTGCAGATTATACGAAGCTGCCGGTGCCCAATACAGACAACCTGTGTACGATCAACAGGTTCGCCAAGGGACTTGGAGTGCGAACCGAATGGAAGGACACGGTTTCTGCTGACGCCTCCGACATCAAGGGCGGAGCCCTGTACATAGTATTAGCCCCGGCTAATGGGCTTGTATTCACAGCTAGAGGTGTCATTAAAGTGTACTTCAAGAGTGTGGGCAATCAGTAGCCCAATGTAATGAGCCCATAGGGCGATGAATAAAATGGCACATTTTATTATGTCATTATGACGAACGAGTACAACGAGAAAATTACATAATTGGTTTTTGTGGGTCGCGAGGGGGAACCCGGAGCACGCACCCAAAAACACTAAACACACAAACCCAGAATATCTATAGGATACATGGCCGGCGCGTGCCGATAGTCACGCTGTAGCTGGCCCTAAGCTTCGAAGAAGCTCTCCCCTGCATACATGTAATGTATGATACAGTTTGTCTCAAACCAGCCAACCTGACTAGGTTGCATTTGTTTGAGCCAGTCTTCGTCCTCGTTCACGAGGATTATTGATGGAACTCCATTCTTGAGCATACGTCGTTTACCATATTTTGGATTTACGGTAATGTCAAACTGGCATCCAACAAGCCCTTTCCAACAAGGAACGAACTTGAATGGTATGTCATCTATGACATTGTAAGTTGCGTTAGCAACTAAGTTGAGGAAGTCGACGCTGTGTTGCCAGTAGTTGTGAGCTCCCAGACTTCTAGCCCAAGAAGTCTTTCCAGTTCTTGTTGGTCCGCAAATGTAGAGTGATCTTCTTCGTTCATCAGGACGTCTGTCCTGCTAATATCAGACATCCATTGGAGGTCAAGCCTCGCTTGGTCCTCCGTTACGCCATTATGTATGGAATATGCATAAGGACTTACAGAAAATAATTCTGCTTGGAGCCATGCTCCAATCACCGGATGTTCATCCTGTGCTGGCATCCCGAAGGGATCCATATATGGCGTAGGAACCGAAGGGAATAAGCTCTCTGCGGAGTATTGGAATTGTTGCAACCTCGTTGCCCAATCGAATGGGAACGTATTCCTGACCATCGAGAGATAGTCCTCCTTGCAGGTACTGCTCTTGATTATCTCCGCCATTTTGGCGTCTTTAGTTGATGGAGCATCAACCTTCTTCTTCTTCTGCTTGGTGCTTGCTTGGAAAACCCCCGTTTCTACGAAACATAAGGGGTTTTTTTTGATGTATGCTAACACCTTGTGTGGCATTCTTGCATTCTGCACGTTAGGATGAAATTCTTCGACGTCGAAGAATTTAGCACTCTTGGTGCGAACATATTTCTTGCATTGTACCAGACAATGCAAATGGTAAGATCCATCTTGATGTTCTTCTCTTGCCACGTAGACATACGTGGGTTCGAACCTTCGAAGAAGGCTTGAGAGGTGTTCTTGCATGAACACCGGATCAAGGTGGCACTTGCTGTACGTTAAGAAAATGTTCCTTGATCTTACCTCGAAGCATGCTGCGACCGCCCCTGGGGCGCCAACCTCCCCGCTCGGTGAGCGGGGGGCGCCAGTTTGCCCCCTGGCGTCTGATGTCTCACTGACAAAGGAGGCCATCTCGTCAGAGGCTATCGTGGATAGACTCTCAGCCCTTGGATGATCTTTGAGATCCGAGGTTTTGAAAAACTCCCTTCCTAGACCCTTGCCCCTTGGCGCCCCCCCCCCCGCGCCCTATCTTATAGGGCCTCGGGTGGGTGGCTTTTTTCTGGGCCGGGCCGGCGTAAAGATGGGCAAGCAA
Gene Information
NCBI Accession
|
YP_004089625.1
|
Location
|
162-503 |
Protein Name
|
movement protein |
Coding Region
|
ATGGCGGAGTACCCTCAGTCTGCTTTCGTTTTATCTGGTGCGATTCCACATCAAAGCAAGGACGAAGGCTTTGCCTCGTCTTTGAAGGTTACTGCTCTATCTTTGTTCGCAGCATTCATTGCTGCTGCCATCTTGTGTTTCCTATACAAGACTTGTCTTGCAGATTGCTATACGCAATACCGGACTACCGGTCTGAGCAGTACATCTTCATCTGGCTTTGGTCGAACCTCTGAGGCTTCGACAGCTGTCCCGCGGACAGCGTCTGAGGTTTCTATTCCCTTAGGGGATAGATCTGCTACTCCATCTTCCTGTTTACCTACATCTGGTATTTCATCTATTTGA |
Protein Sequence
|
MAEYPQSAFVLSGAIPHQSKDEGFASSLKVTALSLFAAFIAAAILCFLYKTCLADCYTQYRTTGLSSTSSSGFGRTSEASTAVPRTASEVSIPLGDRSATPSSCLPTSGISSI |
NCBI Accession
|
YP_004089626.1
|
Location
|
510-1226 |
Protein Name
|
coat protein |
Coding Region
|
ATGACGTCTTCCTCGAAGAGGAAACGTGGATCTGGTAAGACGAAGACGCGCAAGAAGGCGCGTTACACGAAGTGGACATCATCGAGAACAACGTCAGCTGCAGACTCTCTGCAGGTACAGACGTTCCTGTGGGCTGAGGATCAGTCCTTCAATACTGGTGGAGGTTGCAGACTGCTAACCTCCTTCACGCGTGGTTCAGGAGAGAACCAACGCAAATCCCAGGAGACCATTACGTACAAGGTTGCCGTCAACCTTGGCATCTCCGCCTCCACTACCGTTCAGAAGTATTGCCTGACCAGCCATCCTATATGTTGGCTGGTCTACGATAAGACGCCTGGGATTGCTGACCTGACTCCAACTGACATCTTTGATGTCCCGACTGGGTTGAACAACTGGCCTTCAACCTGGAAGGTCAAGCGCGAAGCATCTCACCGCTTCGTGGTGAAACGGCGCTGGCCGTTTAGACTGTCCGTCAATGGCTCTACGTTCTCTGCAGATTATACGAAGCTGCCGGTGCCCAATACAGACAACCTGTGTACGATCAACAGGTTCGCCAAGGGACTTGGAGTGCGAACCGAATGGAAGGACACGGTTTCTGCTGACGCCTCCGACATCAAGGGCGGAGCCCTGTACATAGTATTAGCCCCGGCTAATGGGCTTGTATTCACAGCTAGAGGTGTCATTAAAGTGTACTTCAAGAGTGTGGGCAATCAGTAG |
Protein Sequence
|
MTSSSKRKRGSGKTKTRKKARYTKWTSSRTTSAADSLQVQTFLWAEDQSFNTGGGCRLLTSFTRGSGENQRKSQETITYKVAVNLGISASTTVQKYCLTSHPICWLVYDKTPGIADLTPTDIFDVPTGLNNWPSTWKVKREASHRFVVKRRWPFRLSVNGSTFSADYTKLPVPNTDNLCTINRFAKGLGVRTEWKDTVSADASDIKGGALYIVLAPANGLVFTARGVIKVYFKSVGNQ |
NCBI Accession
|
YP_004089627.1
|
Location
|
1439-1831,1921-2616 |
Protein Name
|
Rep |
Coding Region
|
ATGGCCTCCTTTGTCAGTGAGACATCAGACGCCAGGGGGCAAACTGGCGCCCCCCGCTCACCGAGCGGGGAGGTTGGCGCCCCAGGGGCGGTCGCAGCATGCTTCGAGGTAAGATCAAGGAACATTTTCTTAACGTACAGCAAGTGCCACCTTGATCCGGTGTTCATGCAAGAACACCTCTCAAGCCTTCTTCGAAGGTTCGAACCCACGTATGTCTACGTGGCAAGAGAAGAACATCAAGATGGATCTTACCATTTGCATTGTCTGGTACAATGCAAGAAATATGTTCGCACCAAGAGTGCTAAATTCTTCGACGTCGAAGAATTTCATCCTAACGTGCAGAATGCAAGAATGCCACACAAGGTGTTAGCATACATCAAAAAAAACCCCTTATGTTTCGTAGAAACGGGGGTTTTCCAAGCAAGCACCAAGCAGAAGAAGAAGAAGGTTGATGCTCCATCAACTAAAGACGCCAAAATGGCGGAGATAATCAAGAGCAGTACCTGCAAGGAGGACTATCTCTCGATGGTCAGGAATACGTTCCCATTCGATTGGGCAACGAGGTTGCAACAATTCCAATACTCCGCAGAGAGCTTATTCCCTTCGGTTCCTACGCCATATATGGATCCCTTCGGGATGCCAGCACAGGATGAACATCCGGTGATTGGAGCATGGCTCCAAGCAGAATTATTTTCTAGACGTCCTGATGAACGAAGAAGATCACTCTACATTTGCGGACCAACAAGAACTGGAAAGACTTCTTGGGCTAGAAGTCTGGGAGCTCACAACTACTGGCAACACAGCGTCGACTTCCTCAACTTAGTTGCTAACGCAACTTACAATGTCATAGATGACATACCATTCAAGTTCGTTCCTTGTTGGAAAGGGCTTGTTGGATGCCAGTTTGACATTACCGTAAATCCAAAATATGGTAAACGACGTATGCTCAAGAATGGAGTTCCATCAATAATCCTCGTGAACGAGGACGAAGACTGGCTCAAACAAATGCAACCTAGTCAGGTTGGCTGGTTTGAGACAAACTGTATCATACATTACATGTATGCAGGGGAGAGCTTCTTCGAAGCTTAG |
Protein Sequence
|
MASFVSETSDARGQTGAPRSPSGEVGAPGAVAACFEVRSRNIFLTYSKCHLDPVFMQEHLSSLLRRFEPTYVYVAREEHQDGSYHLHCLVQCKKYVRTKSAKFFDVEEFHPNVQNARMPHKVLAYIKKNPLCFVETGVFQASTKQKKKKVDAPSTKDAKMAEIIKSSTCKEDYLSMVRNTFPFDWATRLQQFQYSAESLFPSVPTPYMDPFGMPAQDEHPVIGAWLQAELFSRRPDERRRSLYICGPTRTGKTSWARSLGAHNYWQHSVDFLNLVANATYNVIDDIPFKFVPCWKGLVGCQFDITVNPKYGKRRMLKNGVPSIILVNEDEDWLKQMQPSQVGWFETNCIIHYMYAGESFFEA |
NCBI Accession
|
YP_004089628.1
|
Location
|
1705-2616 |
Protein Name
|
RepA |
Coding Region
|
ATGGCCTCCTTTGTCAGTGAGACATCAGACGCCAGGGGGCAAACTGGCGCCCCCCGCTCACCGAGCGGGGAGGTTGGCGCCCCAGGGGCGGTCGCAGCATGCTTCGAGGTAAGATCAAGGAACATTTTCTTAACGTACAGCAAGTGCCACCTTGATCCGGTGTTCATGCAAGAACACCTCTCAAGCCTTCTTCGAAGGTTCGAACCCACGTATGTCTACGTGGCAAGAGAAGAACATCAAGATGGATCTTACCATTTGCATTGTCTGGTACAATGCAAGAAATATGTTCGCACCAAGAGTGCTAAATTCTTCGACGTCGAAGAATTTCATCCTAACGTGCAGAATGCAAGAATGCCACACAAGGTGTTAGCATACATCAAAAAAAACCCCTTATGTTTCGTAGAAACGGGGGTTTTCCAAGCAAGCACCAAGCAGAAGAAGAAGAAGGTTGATGCTCCATCAACTAAAGACGCCAAAATGGCGGAGATAATCAAGAGCAGTACCTGCAAGGAGGACTATCTCTCGATGGTCAGGAATACGTTCCCATTCGATTGGGCAACGAGGTTGCAACAATTCCAATACTCCGCAGAGAGCTTATTCCCTTCGGTTCCTACGCCATATATGGATCCCTTCGGGATGCCAGCACAGGATGAACATCCGGTGATTGGAGCATGGCTCCAAGCAGAATTATTTTCTGTAAGTCCTTATGCATATTCCATACATAATGGCGTAACGGAGGACCAAGCGAGGCTTGACCTCCAATGGATGTCTGATATTAGCAGGACAGACGTCCTGATGAACGAAGAAGATCACTCTACATTTGCGGACCAACAAGAACTGGAAAGACTTCTTGGGCTAGAAGTCTGGGAGCTCACAACTACTGGCAACACAGCGTCGACTTCCTCAACTTAG |
Protein Sequence
|
MASFVSETSDARGQTGAPRSPSGEVGAPGAVAACFEVRSRNIFLTYSKCHLDPVFMQEHLSSLLRRFEPTYVYVAREEHQDGSYHLHCLVQCKKYVRTKSAKFFDVEEFHPNVQNARMPHKVLAYIKKNPLCFVETGVFQASTKQKKKKVDAPSTKDAKMAEIIKSSTCKEDYLSMVRNTFPFDWATRLQQFQYSAESLFPSVPTPYMDPFGMPAQDEHPVIGAWLQAELFSVSPYAYSIHNGVTEDQARLDLQWMSDISRTDVLMNEEDHSTFADQQELERLLGLEVWELTTTGNTASTSST |