Citrus chlorotic dwarf associated virus
Basic Information
Genus |
Citlodavirus
|
NCBI Assembly |
GCF_000898955.1 |
Isolate |
Turkey |
Release date |
2015/2/22 |
Submitter |
Loconsole,G., Saldarelli,P., Doddapaneni,H., Savino,V., Martelli,G.P., Saponari,M. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ATCCCGGTTATTGGTTAGGTTTGAATAGGTATTCAAATTTTGATTATGAAACGTGTTGGGCACGTTTCCTCGTGCTATATAAACGTGGAATACTATGCGTATTTGTACATGGAGAAAGGATTATTTGGGGAACACACGGAGAAGGTATTGATCTGTGTACTTGTTTTTTTTTATTCAATCCAAATCATAAGCAATGTGTCATTATGCATTAAGTGTTCAAGATTTGCCCGAGAGTTTGTTCGGTTTAATGAGCATGTTGAGTGTGAGGTATTTAAAGTGTGTGGAAGAGAGGGAAATGGAGAGAAGCCTAATGGTAGGGAATCCCGTAGGAGGAGCCCTGGGTAATGCTCGTATACTTATACGGTTAATACGTAGATACTGCAGGTGTAGAGACTGGGTAAGGAAAGGTAGGGTCAATGGTGAGTACCAGGAGTGGAGGACAATATGGGACAAGCCGTGTAACGACTGTGGAGACGCTGCCGATGTGGGCCACAAAGAGAAGAAGGAGGCCCAGGTGGCCGAGAAAGGAAAAGAAGCCCAAGATTGCTGGGGCTGTATTTGTGAAGGCCCGGCCCAGGAGAAAGTCGAGCAAAGGTGTTCCTCCGGGGTGTAAGGGCCCATGTAAAACACACACGGTGGATGTGATAAAGACTATTTATCACGATGGCCGTGGATCTGGAATGATTTCAAATATTGACCGAGGTGATGAGCTAGGTCAAAGGGAAGGAAGGAAAATAAGGGTTTCACGTATGATCATACGTGGCAAGATCTGGTTGGACGTGAATAATGCATCCGTACCAGGAAGCAATTTAGCTAAAATATGGATTTTCAAGGATAGGAGACCGGGGACTGAACCGGTTGCTTTTAATGCGCTGATGGATATGTCTGATTCAGAACCACTCAGTGCATTTGTGAAGGTTGACTACAGGGACAGGTTTATTGCCCTTCACACTATGACGGTAGACCTGCACGGTGGAAAGGATTTTAGGGTTGACGAGCTTGACTTGGATGAGTTAGTTGAGATAAACAGTGATGTTTTGTTTAGTCATGAGGACGATGGGTCTGTGGCCCATACGATCCAAAATGGTATTTTTATATATTATGCTTGTAGTGATCCTAGACAGACTGTGCAAATAACTGCACAGGCTCGATTGTATTTTTATGATTCTACATCAAATTAATAAAATTTAATATTTTTTTTTAAAATAGAATGGACGGTCAAGATTTGGTGTTACAAGACTATCATAGCACGAGACGTATTGAATACCCTCTAAGTGATGAGTGGCAGCAGATAAAGCTTGCATTCCCTAGTATGAAGGAGATTAGCTGGCATAAGTTACGTGGTCAATGCATGAAAATTGACCATTGTCAGATACGGTATGATCCGCAAGTACCTGCTAATGCAGAAGGGAATGTATTGGTTGTGGTACACGATAGACGTATGGAAGCTGACAAGTCAATGCAAGCTGAATATACTTTTCCAATACGATGTGGAATAGAACTTAATTACTATTCCTGTTCGTATTTTTCGTTGAAGGACCCAGTACCATGGTGTGTATACTATAGGGTTGTGAACTCTACTGTGTTGAAGGGTTCTCATTTTTGTCAATTTAAGGCGCGCGTGAAGCTAAGCGCGGCTAAATCAAGTAGCCCAATTGGGTTCAGGGGTCCAAGTGTTAAGATTTTAAACAAGGCATTCAACGAAGACCAGGTGGATTTCATGCACGTGGGCATCCCGAAGTCAGAAAGGGTGTTATGCAGGAGTAATAGTGTTTTAACGACCCGGCCCAGATTGAATCTTGAGGCTGGGGAGAGTTGGGCCTCGAAAAGTATATTATCAGGCGAAGGTGGATCGGAGGTTGGTGATTCCGGCCCATATAGGGGTTTGGCTCAGTTAGGCCCAGACGCGATTGATCCAGGTGATAGCGCGTCTAATTTGGGTGATCCAAAATCAGTTGCGGATGAAGTCATTAGAAGACTTAACAGTTCAGTTATTGGGATGGACTTAAACAGTTCAAAATTTGCAGAGATAATTGGAGATGCAGTACTCAAGGGAAGTGTGATCAACAGTAGAGATAATCAGGCCTCAACAAGTAATGCTAATGATTATAAGAAAAAAAGCTTGGCTTAAAATTGTATAATTTGTAATTAACGGGGTACGCTTAAGCATTTGTTTGAGCCGAGGCTTTCGAGGCGAGTCACCCCGAAATATAATTTGCCAGAAAATCAATATGTTTATTATAGATAATAAAGGCACGAAGTGCCGTACAAGGATACGAAATCAAATACACGCAAACAACTAGTAGAATACATCAGTGGGGTCCATATAATGCATAAGTACATTTTGGTTCCACCAGTCCTTTATTGTGGGTGACATATAAGTTAACCAGTCCATATCTGGATTAACACATATTATGGACGGTATGCCTCCCTTAATAGTGCGATCGGGTCTATACTTAATGTTAACGGTAATGTTTTTTTGGGACCCCACTAAGGATTTCATAACCTCATGTGAGATTTTGGTGTATTGGATGTCATCAATGACGTTATACAGTGCGTGGTCGTTGTAGTCGTGGAATTTGATGGCACCCGTGAAGTAGTTGTGTAGGCCTAAACTTCTGGCCCAGGCGGTTTTGCCTGATCGGCTTGGGCCGCAGATGTAGAGGGATTTGGGCCTGTCGGGCTTGGAGTCTGGTTCCTGTGCTCGTCACACCAGAAGTGATGTTGCAAATTAATTGGGCACTCAGTCTCAAATATTGCTTTTGGACAGCAGGAATAACACAGTTCATACTGTAAAAATGGTTTACTTACACATAGGATGTTCTGCTGGGCCCACTGCTTGACGTGTTCAGGAAGGTTCGGGAATTCTGTGAAAGCAGGTATGAACGGTTCACGTAGTCTGCAGTAGTTGTCACGTGCGAACGCTGAGATCGCTGGCCATCTGAGGACGAAGTCTGATGGTCTGAGCTCTCTGACTAGGTTAAGGAAGGACCGTTCGTCGGTTGCCTCGAGGAGCACGTCCCTCCACAGTTTTTCTTGATCCTTTTGTGGGGATCGTGCTCTGGAGTTGAAGCGTCCTTCCTCCACATAGTTGCCGTCCTTCATGAGGTATTTTCTGGAGGCGGCTGGTGATTTCAAGGACTCGATACAGGGATGGAATGACCTCTCTCTGCGTACGGAGAGGAGGTCGAAGAACCGGGGGTTCTGTGTTTCGACCCGTTTCTTGCACTGGATCATGGCATGAAGGTGTGGGTCTCCGGATTCGTGGAGTTCCTCACACACGCACATGTAAGTGATTGTGAATCGTGCGAGTGTTAGTCGAAGGAAAGCTTGGAGGTGTTCCTTGGTGCATGGGCACTTGGGGTATGTAAGGAAAATATTTTTGGCTGAGAATCGGAAGCTAGAGGAAGTGGAAGCCATGTTGTACGGATTGGTGGAGGAAAGATTAGCCCCCTTATGGTAGTGGGAGTGGGAGTGCCAATTTTATATAATATTACAGGCACTCCCACTGTGACACGTGGCAGTTTAGCAGCCACAAACAGAGATATGATTGAGAGATGCTCTACGTGGAATAACCTGAGGCCGTTAGATTTGTGTTTCTCACTTTAAATAATAACCATTGGATGAGCTATCCATGCGA
Gene Information
NCBI Accession
|
YP_006522418.1
|
Location
|
194-613 |
Protein Name
|
putative V2-like protein |
Coding Region
|
ATGTGTCATTATGCATTAAGTGTTCAAGATTTGCCCGAGAGTTTGTTCGGTTTAATGAGCATGTTGAGTGTGAGGTATTTAAAGTGTGTGGAAGAGAGGGAAATGGAGAGAAGCCTAATGGTAGGGAATCCCGTAGGAGGAGCCCTGGGTAATGCTCGTATACTTATACGGTTAATACGTAGATACTGCAGGTGTAGAGACTGGGTAAGGAAAGGTAGGGTCAATGGTGAGTACCAGGAGTGGAGGACAATATGGGACAAGCCGTGTAACGACTGTGGAGACGCTGCCGATGTGGGCCACAAAGAGAAGAAGGAGGCCCAGGTGGCCGAGAAAGGAAAAGAAGCCCAAGATTGCTGGGGCTGTATTTGTGAAGGCCCGGCCCAGGAGAAAGTCGAGCAAAGGTGTTCCTCCGGGGTGTAA |
Protein Sequence
|
MCHYALSVQDLPESLFGLMSMLSVRYLKCVEEREMERSLMVGNPVGGALGNARILIRLIRRYCRCRDWVRKGRVNGEYQEWRTIWDKPCNDCGDAADVGHKEKKEAQVAEKGKEAQDCWGCICEGPAQEKVEQRCSSGV |
NCBI Accession
|
YP_006522419.1
|
Location
|
417-1181 |
Protein Name
|
putative coat protein-like protein |
Coding Region
|
ATGGTGAGTACCAGGAGTGGAGGACAATATGGGACAAGCCGTGTAACGACTGTGGAGACGCTGCCGATGTGGGCCACAAAGAGAAGAAGGAGGCCCAGGTGGCCGAGAAAGGAAAAGAAGCCCAAGATTGCTGGGGCTGTATTTGTGAAGGCCCGGCCCAGGAGAAAGTCGAGCAAAGGTGTTCCTCCGGGGTGTAAGGGCCCATGTAAAACACACACGGTGGATGTGATAAAGACTATTTATCACGATGGCCGTGGATCTGGAATGATTTCAAATATTGACCGAGGTGATGAGCTAGGTCAAAGGGAAGGAAGGAAAATAAGGGTTTCACGTATGATCATACGTGGCAAGATCTGGTTGGACGTGAATAATGCATCCGTACCAGGAAGCAATTTAGCTAAAATATGGATTTTCAAGGATAGGAGACCGGGGACTGAACCGGTTGCTTTTAATGCGCTGATGGATATGTCTGATTCAGAACCACTCAGTGCATTTGTGAAGGTTGACTACAGGGACAGGTTTATTGCCCTTCACACTATGACGGTAGACCTGCACGGTGGAAAGGATTTTAGGGTTGACGAGCTTGACTTGGATGAGTTAGTTGAGATAAACAGTGATGTTTTGTTTAGTCATGAGGACGATGGGTCTGTGGCCCATACGATCCAAAATGGTATTTTTATATATTATGCTTGTAGTGATCCTAGACAGACTGTGCAAATAACTGCACAGGCTCGATTGTATTTTTATGATTCTACATCAAATTAA |
Protein Sequence
|
MVSTRSGGQYGTSRVTTVETLPMWATKRRRRPRWPRKEKKPKIAGAVFVKARPRRKSSKGVPPGCKGPCKTHTVDVIKTIYHDGRGSGMISNIDRGDELGQREGRKIRVSRMIIRGKIWLDVNNASVPGSNLAKIWIFKDRRPGTEPVAFNALMDMSDSEPLSAFVKVDYRDRFIALHTMTVDLHGGKDFRVDELDLDELVEINSDVLFSHEDDGSVAHTIQNGIFIYYACSDPRQTVQITAQARLYFYDSTSN |
NCBI Accession
|
YP_006522420.1
|
Location
|
1211-2131 |
Protein Name
|
putative BL1-like movement protein |
Coding Region
|
ATGGACGGTCAAGATTTGGTGTTACAAGACTATCATAGCACGAGACGTATTGAATACCCTCTAAGTGATGAGTGGCAGCAGATAAAGCTTGCATTCCCTAGTATGAAGGAGATTAGCTGGCATAAGTTACGTGGTCAATGCATGAAAATTGACCATTGTCAGATACGGTATGATCCGCAAGTACCTGCTAATGCAGAAGGGAATGTATTGGTTGTGGTACACGATAGACGTATGGAAGCTGACAAGTCAATGCAAGCTGAATATACTTTTCCAATACGATGTGGAATAGAACTTAATTACTATTCCTGTTCGTATTTTTCGTTGAAGGACCCAGTACCATGGTGTGTATACTATAGGGTTGTGAACTCTACTGTGTTGAAGGGTTCTCATTTTTGTCAATTTAAGGCGCGCGTGAAGCTAAGCGCGGCTAAATCAAGTAGCCCAATTGGGTTCAGGGGTCCAAGTGTTAAGATTTTAAACAAGGCATTCAACGAAGACCAGGTGGATTTCATGCACGTGGGCATCCCGAAGTCAGAAAGGGTGTTATGCAGGAGTAATAGTGTTTTAACGACCCGGCCCAGATTGAATCTTGAGGCTGGGGAGAGTTGGGCCTCGAAAAGTATATTATCAGGCGAAGGTGGATCGGAGGTTGGTGATTCCGGCCCATATAGGGGTTTGGCTCAGTTAGGCCCAGACGCGATTGATCCAGGTGATAGCGCGTCTAATTTGGGTGATCCAAAATCAGTTGCGGATGAAGTCATTAGAAGACTTAACAGTTCAGTTATTGGGATGGACTTAAACAGTTCAAAATTTGCAGAGATAATTGGAGATGCAGTACTCAAGGGAAGTGTGATCAACAGTAGAGATAATCAGGCCTCAACAAGTAATGCTAATGATTATAAGAAAAAAAGCTTGGCTTAA |
Protein Sequence
|
MDGQDLVLQDYHSTRRIEYPLSDEWQQIKLAFPSMKEISWHKLRGQCMKIDHCQIRYDPQVPANAEGNVLVVVHDRRMEADKSMQAEYTFPIRCGIELNYYSCSYFSLKDPVPWCVYYRVVNSTVLKGSHFCQFKARVKLSAAKSSSPIGFRGPSVKILNKAFNEDQVDFMHVGIPKSERVLCRSNSVLTTRPRLNLEAGESWASKSILSGEGGSEVGDSGPYRGLAQLGPDAIDPGDSASNLGDPKSVADEVIRRLNSSVIGMDLNSSKFAEIIGDAVLKGSVINSRDNQASTSNANDYKKKSLA |
NCBI Accession
|
YP_006522421.1
|
Location
|
2300->2707 |
Protein Name
|
putative C1:C2-like protein |
Coding Region
|
CGAGCACAGGAACCAGACTCCAAGCCCGACAGGCCCAAATCCCTCTACATCTGCGGCCCAAGCCGATCAGGCAAAACCGCCTGGGCCAGAAGTTTAGGCCTACACAACTACTTCACGGGTGCCATCAAATTCCACGACTACAACGACCACGCACTGTATAACGTCATTGATGACATCCAATACACCAAAATCTCACATGAGGTTATGAAATCCTTAGTGGGGTCCCAAAAAAACATTACCGTTAACATTAAGTATAGACCCGATCGCACTATTAAGGGAGGCATACCGTCCATAATATGTGTTAATCCAGATATGGACTGGTTAACTTATATGTCACCCACAATAAAGGACTGGTGGAACCAAAATGTACTTATGCATTATATGGACCCCACTGATGTATTCTACTAG |
Protein Sequence
|
RAQEPDSKPDRPKSLYICGPSRSGKTAWARSLGLHNYFTGAIKFHDYNDHALYNVIDDIQYTKISHEVMKSLVGSQKNITVNIKYRPDRTIKGGIPSIICVNPDMDWLTYMSPTIKDWWNQNVLMHYMDPTDVFY |
NCBI Accession
|
YP_006522422.1
|
Location
|
2611-3420 |
Protein Name
|
putative RepA-like protein |
Coding Region
|
ATGGCTTCCACTTCCTCTAGCTTCCGATTCTCAGCCAAAAATATTTTCCTTACATACCCCAAGTGCCCATGCACCAAGGAACACCTCCAAGCTTTCCTTCGACTAACACTCGCACGATTCACAATCACTTACATGTGCGTGTGTGAGGAACTCCACGAATCCGGAGACCCACACCTTCATGCCATGATCCAGTGCAAGAAACGGGTCGAAACACAGAACCCCCGGTTCTTCGACCTCCTCTCCGTACGCAGAGAGAGGTCATTCCATCCCTGTATCGAGTCCTTGAAATCACCAGCCGCCTCCAGAAAATACCTCATGAAGGACGGCAACTATGTGGAGGAAGGACGCTTCAACTCCAGAGCACGATCCCCACAAAAGGATCAAGAAAAACTGTGGAGGGACGTGCTCCTCGAGGCAACCGACGAACGGTCCTTCCTTAACCTAGTCAGAGAGCTCAGACCATCAGACTTCGTCCTCAGATGGCCAGCGATCTCAGCGTTCGCACGTGACAACTACTGCAGACTACGTGAACCGTTCATACCTGCTTTCACAGAATTCCCGAACCTTCCTGAACACGTCAAGCAGTGGGCCCAGCAGAACATCCTATGTGTAAGTAAACCATTTTTACAGTATGAACTGTGTTATTCCTGCTGTCCAAAAGCAATATTTGAGACTGAGTGCCCAATTAATTTGCAACATCACTTCTGGTGTGACGAGCACAGGAACCAGACTCCAAGCCCGACAGGCCCAAATCCCTCTACATCTGCGGCCCAAGCCGATCAGGCAAAACCGCCTGGGCCAGAAGTTTAG |
Protein Sequence
|
MASTSSSFRFSAKNIFLTYPKCPCTKEHLQAFLRLTLARFTITYMCVCEELHESGDPHLHAMIQCKKRVETQNPRFFDLLSVRRERSFHPCIESLKSPAASRKYLMKDGNYVEEGRFNSRARSPQKDQEKLWRDVLLEATDERSFLNLVRELRPSDFVLRWPAISAFARDNYCRLREPFIPAFTEFPNLPEHVKQWAQQNILCVSKPFLQYELCYSCCPKAIFETECPINLQHHFWCDEHRNQTPSPTGPNPSTSAAQADQAKPPGPEV |