Plantago lanceolata latent virus


Basic Information

Genus Capulavirus
NCBI Assembly GCF_002824765.1
Isolate Finland: Aland archipelago
Release date 2018/8/25
Submitter Bernardo,P., Muhire,B., Francois,S., Deshoux,M., Hartnady,P., Farkas,K., Kraberger,S., Filloux,D., Fernandez,E., Galzi,S., Ferdinand,R., Granier,M., Marais,A., Monge Blasco,P., Candresse,T., Escriu,F., Varsani,A., Harkins,G.W., Martin,D.P., Roumagnac,P., Frilander,M.J., Monge,P., Peterschmitt,M., Laine,A.L.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038477
TAATATTACTGAAGTCCGCTGTGGGCCCCACCTTATCGTATTGGTCAAAAATGATGGGCCCTGCGAATCTGTTTTTTGAGTGACGTGTTTAATATGTCACGTATTTGGGACAGTATTTATACAATGATCTGCAGTATCTGTGATATTTGTATACAAATTTCTGACAGAAGCTAGTATTGTATGGAATACTGTTCCGAAGTACTCTTCTGGACGTATTTTTTGATAATTACTATTTATTTTGCATTGATATTATATTTCAATGGCAAAACGCTTCTACTTGGTCGACGAATTACCGAGCAGTTACGGGAAGTTAATTGCTATTGCCGGGAGGCAATGGCTTCAAGACCAGGAGAAGCGCGCGTTGGAGAATTCACTAATTCGGCAGGCCGACTTGTACCGTCAAGTTCGTGTAGGCTTTCAAAAATCCCAGAAGAGGGGTGAGCGTTGGAGCGTTAAAGTAGCGCGGTTTGAAGAAATTCTTCAAGCGGCTATAAATACGTCACGTTTGGGGCGTATTGAGTACGAGATCGAATCGCGAATTGTTAAGGACAATGGTGAAGCGAAAGAGGAGTACTGGTGTGACTACGACTTATGCGAAGCGGAGTAGGGTTGGCAGTGGTTATAGGCGACGTTGGAGTAGACGTCGTCGTATTGTTAGGCGTAAAGGTGTTTATGCAAGGCACAGATCTCAGTCTGTGTTACATTCCCTGTCTAATGCGACAGCAACGAAGGGAAAGGCTGGTTATGGATGGCATTTGAACGAGATACCTTTGGGTTCTTCTTACCCCGAGCGACATAGTGATAAAGTGAAGGTGAAGTCATTTAGGTTCCGTATGCAATTTAGAGATGGTGCTAACGGAGGAACCAATGCTGCAAATGTTCATAACCTATATCTTTATCTTGTGAAAGATAATAGTGGGGGTACCGAAGTTCCGTCATTCGATAAGATAGCAATGATGGACTACGGTAATGTTGCAACTGCAATTATCGACCACGATTCAGAGAAGAGATTCACTATTGTTAGGCAATGGAAGTATACTTTTACCGGGTCTTGTAATTCGCAATATCCCGGTAAAGATAGGATTGATTTTAACGACGTTGTTTACATTAATGTAGATACGGAGTTTAAGTCTGCGACAGATGGTAAGTATGCAAATACCCAAAAGAATGCTTGGGTTTTGTATATTATACCGCAGAGTTATGACTGTGTAATTGACGGACATGTTAATGTTCGTTTTGAATCGTTGGTGTAACTAAATATTTGTGAAATAAAAAGTTTATCTTTGGTGTATTTAACAAATATTTTGTTTTTGGGGGGTTAAAGTGTAAAAAAATTGTACTTGGTGTTGCCATTTGTAAAAAAATTGAAGGAAAAAAATGTTGCCCCGTGTATACAATAGAATAATTGGAGCCCGCGTGAGCGGGTGGAAGAACTTTTCAATAAAAGGGCTGTTGTATTTCTATATGTAATACGTTACATACAGACCATTCGTACATCTCATGTAGCTGTAGTGCAGCTCTGTACGATTGGTCTGGGTTACATAGTACTATAGTTGGAATTCCTCCGGGCACTTTTGTTTTTTTACGGTATTTTTCATTTACCGTAAAATCTTTTTGTGCTCCGAGGATTTCTTTTTTACATGGTAAAAACTGAAATGGAATATCATCTATTACATTATACATAGCGTGTTTGTCATACGCGCTCCAGTCCACACTTCCGCAGTAGTAATTGTGTCGGCCCAGTGATCTAGCCCATGCTGTTTTACCTGTTTTGGATGGGCCTTCAATGATTAATGTGATGGGCCTATCAGGTCTGTGGTCCTGCATCAGAAACAGTAATGGGCTGTTGTGAGTTCAACAGTAGTTGTTCTTCTAATTCTTCTTGGGCCGTATTTGAGGCCCAATCCAGATCTGCATGTTCAATATCTGGATCAATTAGTTGCATACTGTTGAAACTTACTGTGTAGAGGTTTGTTTCGGCCCATTGTTTAATGGGCTCAGGTAAATTAGGGAAAGCCCTGTATCTGGGTTCATACAGTACAGGGGGTTCTGGCCATCTGGAATTGGCTGCGTACTCCAGGTTGCGTAACTGTGTTGCCCATGTGTAGGGCTGTTCCGACTGGACTCTGGCGAGGAAGTCGGGCTTGGATGTAGACTCCTGGAGTATAGCAGTCCAGATTGTATCCCTAGACTTCTTAGGGCTACGTCTTGTAGCCTTAAGTACGCCTCGTTCGACGAAGTTTCCGTCCTTGGCGATGTAGTCGGCGACGTGGGCGTCGCTTCTGGGTACCTGGATATTGGGGTGGTGTGGTTGAGCATCACCACTGGTAATAGTGTTTGCGGTGGTGATGTCGAAGTATTTTGGGTCTCTGGTGGTGAGTCGCTTTGCGAGTTGGACGAGACAGTGGAGGTGTTTCGTTCCATCCTGATGATTTTCCTGACAAACTCTGGCATAAAAAATATCATAATTTTTTAATAGATTATATAAATAATCTAGTACGGATGTTGGTGTTAAATCGCATTTTGGGTAAGTTAGGAAAGCCGACTTACCCTGAAATCGGTATGTTAGTGGTTGACGTGGCATATTTCTAGAGAGAGAAATATTGTAGGGGTATTTTGGGTGGAAAAAAAAATAGGCTGAAAATGGTGTTTCCAGAGGGTTTTCAGACTAGTTTCGTGTTTAACAATGAAGTGAGCCGCGTAGCCAATTTATAGTAGTGAGCCAATGAGGCGAATTTAGCGAGAATTTGGAATCCGTAAATCTGGGCCGTTGATTGGATGTGTGGATGGATTAGTGCCACGTGGCGGGTACTGTGGGCGGCGGACTTCATA

Gene Information

NCBI Accession YP_009506569.1
Location 181-441
Protein Name V4
Coding Region ATGGAATACTGTTCCGAAGTACTCTTCTGGACGTATTTTTTGATAATTACTATTTATTTTGCATTGATATTATATTTCAATGGCAAAACGCTTCTACTTGGTCGACGAATTACCGAGCAGTTACGGGAAGTTAATTGCTATTGCCGGGAGGCAATGGCTTCAAGACCAGGAGAAGCGCGCGTTGGAGAATTCACTAATTCGGCAGGCCGACTTGTACCGTCAAGTTCGTGTAGGCTTTCAAAAATCCCAGAAGAGGGGTGA
Protein Sequence MEYCSEVLFWTYFLIITIYFALILYFNGKTLLLGRRITEQLREVNCYCREAMASRPGEARVGEFTNSAGRLVPSSSCRLSKIPEEG

NCBI Accession YP_009506570.1
Location 260-607
Protein Name V3
Coding Region ATGGCAAAACGCTTCTACTTGGTCGACGAATTACCGAGCAGTTACGGGAAGTTAATTGCTATTGCCGGGAGGCAATGGCTTCAAGACCAGGAGAAGCGCGCGTTGGAGAATTCACTAATTCGGCAGGCCGACTTGTACCGTCAAGTTCGTGTAGGCTTTCAAAAATCCCAGAAGAGGGGTGAGCGTTGGAGCGTTAAAGTAGCGCGGTTTGAAGAAATTCTTCAAGCGGCTATAAATACGTCACGTTTGGGGCGTATTGAGTACGAGATCGAATCGCGAATTGTTAAGGACAATGGTGAAGCGAAAGAGGAGTACTGGTGTGACTACGACTTATGCGAAGCGGAGTAG
Protein Sequence MAKRFYLVDELPSSYGKLIAIAGRQWLQDQEKRALENSLIRQADLYRQVRVGFQKSQKRGERWSVKVARFEEILQAAINTSRLGRIEYEIESRIVKDNGEAKEEYWCDYDLCEAE

NCBI Accession YP_009506571.1
Location 552-1253
Protein Name coat protein
Coding Region ATGGTGAAGCGAAAGAGGAGTACTGGTGTGACTACGACTTATGCGAAGCGGAGTAGGGTTGGCAGTGGTTATAGGCGACGTTGGAGTAGACGTCGTCGTATTGTTAGGCGTAAAGGTGTTTATGCAAGGCACAGATCTCAGTCTGTGTTACATTCCCTGTCTAATGCGACAGCAACGAAGGGAAAGGCTGGTTATGGATGGCATTTGAACGAGATACCTTTGGGTTCTTCTTACCCCGAGCGACATAGTGATAAAGTGAAGGTGAAGTCATTTAGGTTCCGTATGCAATTTAGAGATGGTGCTAACGGAGGAACCAATGCTGCAAATGTTCATAACCTATATCTTTATCTTGTGAAAGATAATAGTGGGGGTACCGAAGTTCCGTCATTCGATAAGATAGCAATGATGGACTACGGTAATGTTGCAACTGCAATTATCGACCACGATTCAGAGAAGAGATTCACTATTGTTAGGCAATGGAAGTATACTTTTACCGGGTCTTGTAATTCGCAATATCCCGGTAAAGATAGGATTGATTTTAACGACGTTGTTTACATTAATGTAGATACGGAGTTTAAGTCTGCGACAGATGGTAAGTATGCAAATACCCAAAAGAATGCTTGGGTTTTGTATATTATACCGCAGAGTTATGACTGTGTAATTGACGGACATGTTAATGTTCGTTTTGAATCGTTGGTGTAA
Protein Sequence MVKRKRSTGVTTTYAKRSRVGSGYRRRWSRRRRIVRRKGVYARHRSQSVLHSLSNATATKGKAGYGWHLNEIPLGSSYPERHSDKVKVKSFRFRMQFRDGANGGTNAANVHNLYLYLVKDNSGGTEVPSFDKIAMMDYGNVATAIIDHDSEKRFTIVRQWKYTFTGSCNSQYPGKDRIDFNDVVYINVDTEFKSATDGKYANTQKNAWVLYIIPQSYDCVIDGHVNVRFESLV

NCBI Accession YP_009506572.1
Location 1438-1821,1961-2584
Protein Name replication-associated protein
Coding Region ATGCCACGTCAACCACTAACATACCGATTTCAGGGTAAGTCGGCTTTCCTAACTTACCCAAAATGCGATTTAACACCAACATCCGTACTAGATTATTTATATAATCTATTAAAAAATTATGATATTTTTTATGCCAGAGTTTGTCAGGAAAATCATCAGGATGGAACGAAACACCTCCACTGTCTCGTCCAACTCGCAAAGCGACTCACCACCAGAGACCCAAAATACTTCGACATCACCACCGCAAACACTATTACCAGTGGTGATGCTCAACCACACCACCCCAATATCCAGGTACCCAGAAGCGACGCCCACGTCGCCGACTACATCGCCAAGGACGGAAACTTCGTCGAACGAGGCGTACTTAAGGCTACAAGACGTAGCCCTAAGAAGTCTAGGGATACAATCTGGACTGCTATACTCCAGGAGTCTACATCCAAGCCCGACTTCCTCGCCAGAGTCCAGTCGGAACAGCCCTACACATGGGCAACACAGTTACGCAACCTGGAGTACGCAGCCAATTCCAGATGGCCAGAACCCCCTGTACTGTATGAACCCAGATACAGGGCTTTCCCTAATTTACCTGAGCCCATTAAACAATGGGCCGAAACAAACCTCTACACAGACCACAGACCTGATAGGCCCATCACATTAATCATTGAAGGCCCATCCAAAACAGGTAAAACAGCATGGGCTAGATCACTGGGCCGACACAATTACTACTGCGGAAGTGTGGACTGGAGCGCGTATGACAAACACGCTATGTATAATGTAATAGATGATATTCCATTTCAGTTTTTACCATGTAAAAAAGAAATCCTCGGAGCACAAAAAGATTTTACGGTAAATGAAAAATACCGTAAAAAAACAAAAGTGCCCGGAGGAATTCCAACTATAGTACTATGTAACCCAGACCAATCGTACAGAGCTGCACTACAGCTACATGAGATGTACGAATGGTCTGTATGTAACGTATTACATATAGAAATACAACAGCCCTTTTATTGA
Protein Sequence MPRQPLTYRFQGKSAFLTYPKCDLTPTSVLDYLYNLLKNYDIFYARVCQENHQDGTKHLHCLVQLAKRLTTRDPKYFDITTANTITSGDAQPHHPNIQVPRSDAHVADYIAKDGNFVERGVLKATRRSPKKSRDTIWTAILQESTSKPDFLARVQSEQPYTWATQLRNLEYAANSRWPEPPVLYEPRYRAFPNLPEPIKQWAETNLYTDHRPDRPITLIIEGPSKTGKTAWARSLGRHNYYCGSVDWSAYDKHAMYNVIDDIPFQFLPCKKEILGAQKDFTVNEKYRKKTKVPGGIPTIVLCNPDQSYRAALQLHEMYEWSVCNVLHIEIQQPFY

NCBI Accession YP_009506573.1
Location 1808-2584
Protein Name RepA
Coding Region ATGCCACGTCAACCACTAACATACCGATTTCAGGGTAAGTCGGCTTTCCTAACTTACCCAAAATGCGATTTAACACCAACATCCGTACTAGATTATTTATATAATCTATTAAAAAATTATGATATTTTTTATGCCAGAGTTTGTCAGGAAAATCATCAGGATGGAACGAAACACCTCCACTGTCTCGTCCAACTCGCAAAGCGACTCACCACCAGAGACCCAAAATACTTCGACATCACCACCGCAAACACTATTACCAGTGGTGATGCTCAACCACACCACCCCAATATCCAGGTACCCAGAAGCGACGCCCACGTCGCCGACTACATCGCCAAGGACGGAAACTTCGTCGAACGAGGCGTACTTAAGGCTACAAGACGTAGCCCTAAGAAGTCTAGGGATACAATCTGGACTGCTATACTCCAGGAGTCTACATCCAAGCCCGACTTCCTCGCCAGAGTCCAGTCGGAACAGCCCTACACATGGGCAACACAGTTACGCAACCTGGAGTACGCAGCCAATTCCAGATGGCCAGAACCCCCTGTACTGTATGAACCCAGATACAGGGCTTTCCCTAATTTACCTGAGCCCATTAAACAATGGGCCGAAACAAACCTCTACACAGTAAGTTTCAACAGTATGCAACTAATTGATCCAGATATTGAACATGCAGATCTGGATTGGGCCTCAAATACGGCCCAAGAAGAATTAGAAGAACAACTACTGTTGAACTCACAACAGCCCATTACTGTTTCTGATGCAGGACCACAGACCTGA
Protein Sequence MPRQPLTYRFQGKSAFLTYPKCDLTPTSVLDYLYNLLKNYDIFYARVCQENHQDGTKHLHCLVQLAKRLTTRDPKYFDITTANTITSGDAQPHHPNIQVPRSDAHVADYIAKDGNFVERGVLKATRRSPKKSRDTIWTAILQESTSKPDFLARVQSEQPYTWATQLRNLEYAANSRWPEPPVLYEPRYRAFPNLPEPIKQWAETNLYTVSFNSMQLIDPDIEHADLDWASNTAQEELEEQLLLNSQQPITVSDAGPQT

NCBI Accession YP_009506574.1
Location 1957-2466
Protein Name C3
Coding Region ATGATATTTTTTATGCCAGAGTTTGTCAGGAAAATCATCAGGATGGAACGAAACACCTCCACTGTCTCGTCCAACTCGCAAAGCGACTCACCACCAGAGACCCAAAATACTTCGACATCACCACCGCAAACACTATTACCAGTGGTGATGCTCAACCACACCACCCCAATATCCAGGTACCCAGAAGCGACGCCCACGTCGCCGACTACATCGCCAAGGACGGAAACTTCGTCGAACGAGGCGTACTTAAGGCTACAAGACGTAGCCCTAAGAAGTCTAGGGATACAATCTGGACTGCTATACTCCAGGAGTCTACATCCAAGCCCGACTTCCTCGCCAGAGTCCAGTCGGAACAGCCCTACACATGGGCAACACAGTTACGCAACCTGGAGTACGCAGCCAATTCCAGATGGCCAGAACCCCCTGTACTGTATGAACCCAGATACAGGGCTTTCCCTAATTTACCTGAGCCCATTAAACAATGGGCCGAAACAAACCTCTACACAGTAA
Protein Sequence MIFFMPEFVRKIIRMERNTSTVSSNSQSDSPPETQNTSTSPPQTLLPVVMLNHTTPISRYPEATPTSPTTSPRTETSSNEAYLRLQDVALRSLGIQSGLLYSRSLHPSPTSSPESSRNSPTHGQHSYATWSTQPIPDGQNPLYCMNPDTGLSLIYLSPLNNGPKQTSTQ