Genus | Capulavirus |
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NCBI Assembly | GCF_001654365.1 |
Isolate | South Africa: Western Cape, Darling |
Release date | 2016/6/2 |
Submitter | Bernardo,P., Muhire,B., Francois,S., Deshoux,M., Hartnady,P., Farkas,K., Kraberger,S., Filloux,D., Fernandez,E., Galzi,S., Ferdinand,R., Granier,M., Marais,A., Monge Blasco,P., Candresse,T., Escriu,F., Varsani,A., Harkins,G.W., Martin,D.P., Roumagnac,P., Frilander,M.J., Monge,P., Peterschmitt,M., Laine,A.L. |
Host | |
Vector | |
Download | Genome |GFF3 |PEP |CDS |
NCBI Accession | YP_009255243.1 |
---|---|
Location | 128-334 |
Protein Name | V2 |
Coding Region | ATGTTCTCGAAGAGGTCATTGGGACATCCTAGTACTGTTTATGGAATATTGTGCCTCCTTAATTTTTTGGTGGCAGAATATTTTATTAATTTTTATTTTTTCATTTATTATTTTTATAAATGGAAAAACGTTTCTACTTCTCAGAAGAACTTCCGGATACGTACGGGAAGTTACAGGGCTTCTGCACAGAATACTTCTTGGGCTTGA |
Protein Sequence | MFSKRSLGHPSTVYGILCLLNFLVAEYFINFYFFIYYFYKWKNVSTSQKNFRIRTGSYRASAQNTSWA |
NCBI Accession | YP_009255244.1 |
---|---|
Location | 168-431 |
Protein Name | V4 |
Coding Region | ATGGAATATTGTGCCTCCTTAATTTTTTGGTGGCAGAATATTTTATTAATTTTTATTTTTTCATTTATTATTTTTATAAATGGAAAAACGTTTCTACTTCTCAGAAGAACTTCCGGATACGTACGGGAAGTTACAGGGCTTCTGCACAGAATACTTCTTGGGCTTGATGATAGAGAAGGCCCAAGAACTGGGCCTCTTTCAAGAGGCCTACAGATACCGTACTCTGAGACAGGCCTTCAGACAATCTCAGAGGAGGAAAGATAA |
Protein Sequence | MEYCASLIFWWQNILLIFIFSFIIFINGKTFLLLRRTSGYVREVTGLLHRILLGLDDREGPRTGPLSRGLQIPYSETGLQTISEEER |
NCBI Accession | YP_009255245.1 |
---|---|
Location | 247-651 |
Protein Name | V3 |
Coding Region | ATGGAAAAACGTTTCTACTTCTCAGAAGAACTTCCGGATACGTACGGGAAGTTACAGGGCTTCTGCACAGAATACTTCTTGGGCTTGATGATAGAGAAGGCCCAAGAACTGGGCCTCTTTCAAGAGGCCTACAGATACCGTACTCTGAGACAGGCCTTCAGACAATCTCAGAGGAGGAAAGATAAATGGGCCATAAAAGTGGCCCAATTTAACGGAGATTTGACGGCGGCTATAAATAGCGGCCGATTGTTTGGGCTCGAGGCCCAAAAATATTTAGATTACAAATCCCAAGTTGAGAATGGTGACTACAAGATCGGGACGCAATTACCAGGCCCTGGTCCCAACATGGGCCCGAAAGAAGAGAAGGTCCACCCTAGCCCGGAGTACAATAGTTGGGCCGATTAG |
Protein Sequence | MEKRFYFSEELPDTYGKLQGFCTEYFLGLMIEKAQELGLFQEAYRYRTLRQAFRQSQRRKDKWAIKVAQFNGDLTAAINSGRLFGLEAQKYLDYKSQVENGDYKIGTQLPGPGPNMGPKEEKVHPSPEYNSWAD |
NCBI Accession | YP_009255246.1 |
---|---|
Location | 545-1273 |
Protein Name | coat protein |
Coding Region | ATGGTGACTACAAGATCGGGACGCAATTACCAGGCCCTGGTCCCAACATGGGCCCGAAAGAAGAGAAGGTCCACCCTAGCCCGGAGTACAATAGTTGGGCCGATTAGAAGGCCCAATTACCAGTACAAGACCAGATACACTCCTCATAGGCCTCAACACAAGATTCACTCTCTTAGCCAGACCCGGGTTGTTAGCGGATCTGATAATGGTTATGGGTGGCATGTATCGGGTGTTAATATAGGATCCGGTTTCGAAGACAGACACAGTGACAAGATTAAGATAATTAATCTTAAGTTTATGATGCAGTTAAAGACTTCAGATGCCGGTCAACAGGCATCTTGTTACCATAATTTGTATATGTTTTTAGTTAAAGATAATTCTGGTGGAGCCCAAGTTCCCAAGTTTAATTCAATAGTAATGATGGATAATTCAAATCCAGCTACTGCAGAGGTTGACCACGATAGTAAAGACCGATTTACTATTGTACGGAGATGGAAGTTTAGCTTTAAGGGTAATTCATCTAAAAACGGCACCGCATACGACTGTGCTCGTAATTTAATTGATTTTAATAGAAATGTTAAAATCAATTCTGTTAGCGAGTTTAAATCCGCTACGGATGGTTCATATGCAAATACACAGAAGAATGCATGGGTTCTGTATATTGTACCACAGATATACGATTGTACTGTAGACGGACATGTAAAAATAAAATACGTATCTATTGTGTAA |
Protein Sequence | MVTTRSGRNYQALVPTWARKKRRSTLARSTIVGPIRRPNYQYKTRYTPHRPQHKIHSLSQTRVVSGSDNGYGWHVSGVNIGSGFEDRHSDKIKIINLKFMMQLKTSDAGQQASCYHNLYMFLVKDNSGGAQVPKFNSIVMMDNSNPATAEVDHDSKDRFTIVRRWKFSFKGNSSKNGTAYDCARNLIDFNRNVKINSVSEFKSATDGSYANTQKNAWVLYIVPQIYDCTVDGHVKIKYVSIV |
NCBI Accession | YP_009255247.1 |
---|---|
Location | 1295-1678,1818-2429 |
Protein Name | replication-associated protein |
Coding Region | ATGCCTCGTCAACCCAACAACACATTCCGCTTACAAGGTAAGTCTATTTTTCTGACTTACCCAAAATGCCCTCTTCTTCCTATTTTTTTAATTGATTATTTATATCAACTATTAAATAATTTTAACCCTACATATGCTAGGGTATGTACGGAGAATCACCAAGACGGTGAGCCACACCTTCACTGCCTTGTCCAGATGGACAAGAGGCTCAACACAACCAACCAACGGTTCTTCGACATCAAGGACCCAAATGGAGTGGCCACATACCACCCCAATTGCCAGGTCCCAAGAAGAGATGCAGATGTGGCAGACTATATTGCCAAGGGAGGACAATTTGAGGAACGAGGAATACTTAGGGCAAGTAGAAGAAGCCCTAAGAAGACAAGGGATACAATTTGGGCCTCCATCCTCACTGAATCCACATCCAAGTCCGAATTCCTCGCCAGAGTCCAACATGAGCAACCATATGTCTGGGCCACTCAACTCAGAAATCTGGAGTATGCAGCAAACAGTAAATGGCCCGAGCCCATTACTGTGTTCGAACCCAGATTTGTCAATTTTCCTCGCATCCCCGAGCCCATTCAACAATGGGCCGAGACAAATCTCTTCACAGACCAGAAACCTGATCGACCAATCACATTAATAATCGAGGGACCCTCCAAGACAGGCAAGACTGCGTGGGCCAGAAGCCTTGGAAGACACAACTATTACTGTGGAGGGGTTGACTTTAGTAATTATGATGTATTTGCTTTGTATAATGTAATTGATGATATTCCGTTCCAGTATTTACCTTGTAAAAAAGAATTACTAGGCTGTCAGAAAGATTTTACGGTAAATGAAAAATACCGTAAAAAAACTAGGATTAAAGGAGGGATTCCAACAATTATATTGTGCAATCCCGATCAATCCTATAGGATTGCTCTAGCTAATTCTGAAATGTACGAATGGAGTACACATAATGTGCTAAATATTGAAATAAAAGACCCTTTTTATTAA |
Protein Sequence | MPRQPNNTFRLQGKSIFLTYPKCPLLPIFLIDYLYQLLNNFNPTYARVCTENHQDGEPHLHCLVQMDKRLNTTNQRFFDIKDPNGVATYHPNCQVPRRDADVADYIAKGGQFEERGILRASRRSPKKTRDTIWASILTESTSKSEFLARVQHEQPYVWATQLRNLEYAANSKWPEPITVFEPRFVNFPRIPEPIQQWAETNLFTDQKPDRPITLIIEGPSKTGKTAWARSLGRHNYYCGGVDFSNYDVFALYNVIDDIPFQYLPCKKELLGCQKDFTVNEKYRKKTRIKGGIPTIILCNPDQSYRIALANSEMYEWSTHNVLNIEIKDPFY |
NCBI Accession | YP_009255248.1 |
---|---|
Location | 1665-2429 |
Protein Name | RepA |
Coding Region | ATGCCTCGTCAACCCAACAACACATTCCGCTTACAAGGTAAGTCTATTTTTCTGACTTACCCAAAATGCCCTCTTCTTCCTATTTTTTTAATTGATTATTTATATCAACTATTAAATAATTTTAACCCTACATATGCTAGGGTATGTACGGAGAATCACCAAGACGGTGAGCCACACCTTCACTGCCTTGTCCAGATGGACAAGAGGCTCAACACAACCAACCAACGGTTCTTCGACATCAAGGACCCAAATGGAGTGGCCACATACCACCCCAATTGCCAGGTCCCAAGAAGAGATGCAGATGTGGCAGACTATATTGCCAAGGGAGGACAATTTGAGGAACGAGGAATACTTAGGGCAAGTAGAAGAAGCCCTAAGAAGACAAGGGATACAATTTGGGCCTCCATCCTCACTGAATCCACATCCAAGTCCGAATTCCTCGCCAGAGTCCAACATGAGCAACCATATGTCTGGGCCACTCAACTCAGAAATCTGGAGTATGCAGCAAACAGTAAATGGCCCGAGCCCATTACTGTGTTCGAACCCAGATTTGTCAATTTTCCTCGCATCCCCGAGCCCATTCAACAATGGGCCGAGACAAATCTCTTCACAGTAAGTGCCCATGCAATTCAATTATTAGGGGCCGATTTGACTATTGAGGATATTAGATGGGCCCATGATTTAACAACTGAATTTATTAATGATGAATTAATTAATAATATTGATGAACCAATAATTATTAATGACTCAGGACCAGAAACCTGA |
Protein Sequence | MPRQPNNTFRLQGKSIFLTYPKCPLLPIFLIDYLYQLLNNFNPTYARVCTENHQDGEPHLHCLVQMDKRLNTTNQRFFDIKDPNGVATYHPNCQVPRRDADVADYIAKGGQFEERGILRASRRSPKKTRDTIWASILTESTSKSEFLARVQHEQPYVWATQLRNLEYAANSKWPEPITVFEPRFVNFPRIPEPIQQWAETNLFTVSAHAIQLLGADLTIEDIRWAHDLTTEFINDELINNIDEPIIINDSGPET |
NCBI Accession | YP_009255249.1 |
---|---|
Location | 1814-2296 |
Protein Name | C3 |
Coding Region | ATGCTAGGGTATGTACGGAGAATCACCAAGACGGTGAGCCACACCTTCACTGCCTTGTCCAGATGGACAAGAGGCTCAACACAACCAACCAACGGTTCTTCGACATCAAGGACCCAAATGGAGTGGCCACATACCACCCCAATTGCCAGGTCCCAAGAAGAGATGCAGATGTGGCAGACTATATTGCCAAGGGAGGACAATTTGAGGAACGAGGAATACTTAGGGCAAGTAGAAGAAGCCCTAAGAAGACAAGGGATACAATTTGGGCCTCCATCCTCACTGAATCCACATCCAAGTCCGAATTCCTCGCCAGAGTCCAACATGAGCAACCATATGTCTGGGCCACTCAACTCAGAAATCTGGAGTATGCAGCAAACAGTAAATGGCCCGAGCCCATTACTGTGTTCGAACCCAGATTTGTCAATTTTCCTCGCATCCCCGAGCCCATTCAACAATGGGCCGAGACAAATCTCTTCACAGTAA |
Protein Sequence | MLGYVRRITKTVSHTFTALSRWTRGSTQPTNGSSTSRTQMEWPHTTPIARSQEEMQMWQTILPREDNLRNEEYLGQVEEALRRQGIQFGPPSSLNPHPSPNSSPESNMSNHMSGPLNSEIWSMQQTVNGPSPLLCSNPDLSIFLASPSPFNNGPRQISSQ |