Catharanthus yellow mosaic virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000928135.1 |
Isolate |
Pakistan:Islamabad |
Release date |
2015/2/22 |
Submitter |
Mustujab,A., Tahir,M. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTGTGGGCCCCACAAAGCACTAACTGACAAGGACATATGGACCAATGAGAATCGTTCTACATCGCCTCATTGTTTTGTGGTCCCCCTATATAATTACTTGCTGAGTAAGATTGTTGTAAACATGTGGGACCCACTAGTGAACGAGTTTCCMGAAACTGTTCATGGGTTTAGGTGCATGTTGGCAGTGAAATATCTCCAACTAGTTGCAGATACGTATTCTCCAGATACGGTGGGATACGATTTAATACGTGATTTAATTTCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCGAGGGGATGTGAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAAATCTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTCATGTTTTTTCTTGTTAGGGATCGTAGACCCGTTGACAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGCACGCAACTGTGACAGGTGGTCTATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAATAAATATTGAATTTTATATCATGATTCTCAATTACATTAATTGTGCCCTCAAGTACATCATATAATACATGTCTGAAAGCCTTAATACAATTATTTATACTAATTACGCCTAAACTATCTAAATATCGTAAAACTTGAGTCTTAAAGACTCTTAAGAAATGCCCAGTCTGAGGATGTAAACGAGTGTGGATCCTCAGGCCCAAGTAACACTTCATTATCCCCAGTCTCTTCCTGAGGTTGTGATTGAACTGGACCCTGATGTTGATGATGTCGTGGTTCATGTTGAGTGGCCTGCTGTGGTGTTCTGTTATCTTGAAGTAGAGGGGATTTTGAATCTCCCAGATATACACGCCATTCTCTGCTTGAGCTGCAGTGATGGATTCCCCTGTGCGTGAATCCATGGTTGTGGCAGTTGATGTGTACGTAGTATGAGCACCCACAGTTTAGATCAACCCTCTTACGCCGGATGGCTCTACGCTTAGCAGCTCTGTGTTGGACCTTGATTGGAACCTGAGTATAGTGGGCCTTCGAGGGAGATGAAGGTTGCATTTTTTAGTGCCCAGGCTTTCAATGCGCTATTCTTCTCCTCGTCCAGGTACTCCTTATAGCTGGAATTGGGCCCAGGATTGCAGAGGAAGATAGTGGGAATACCACCTTTAATTTGAACTGGCTTCCCGTACTTTGTATTTGATTGCCAGTCCCTTTGGGCCCCCATGAACTCTTTAAAGTGCTTTAGGTAGTGGGGATCAACGTCATCAATGACGTTGTACCAGGCCTCATTATTGTAGACCTTTGGGCTAAGGTCTAGATGCCCACACAGATAATTATGTGGTCCAAGTGATCTGGCCCACATCGTCTTTCCCGTTCTACTGTCACCCTCTATGACTATACTTATGGGTCTCAAAGGCCGCGCAGCGGCACTGACAACATTCTCGGCAGCCCACTCCTCAAGTTCTTCGGGAACTTGATCAAAGGAAGAAGACGAAAAAGGAGAAACATAAACCTCTACAGGAGGTGTAAAAATCCTATCTAAATTACATTTTAAATTATGATATTGAAAAATAAAATCTTTAGGGAGTTTTTCCCTAATTATTGCTAAAGCTGCGTCAGCAGAACCGGCATTTAACGCCTCTGCTGCAACATCATTAGCTGTCTGTTGACCTCCTCGAGCAGATCTTCCATCGATCTGAAACTCACCCCAGTCGATGTAATCACCGTCCTTCTCGATGTAGGACTTGACATCAGAGCTGGACTTAGCTCCCTGGAAGTTTGGGTGGAATTGAGTTGAGGTATAGGGGTGAGTGACATCAAAATGTCTGGGGTTTCTGAACTGGGATTTACCTTTGAACTGGATGAGGGCATGGATATGCAGAGACCCATCTTGGTGTTTTTCTTGTGACACTCTGATAAATAATTTATCAGAAGGACAGGAAATGTTTTTAAGGAGTTCGAGCATTTGCTCCTTTGGTAATGGACATTTCGGATAAGTGAGGAAGATATTTTTGGCCTTCACTTGGAACTGGTGTGTACGAGGCATAATGAATTGGGTGCTCTCTAAAACTCTATGGAATGGGGTGCTTTGGGTGCCTATTTATACCGAGCCCCCAAATGGCATATTCGTAATTTCGAAATAACTTTCGAAATCCTCACGCTCCAAAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_009112872.1
|
Location
|
142-507 |
Gene Name
|
V2 |
Protein Name
|
pre coat protein |
Coding Region
|
ATGTGGGACCCACTAGTGAACGAGTTTCCMGAAACTGTTCATGGGTTTAGGTGCATGTTGGCAGTGAAATATCTCCAACTAGTTGCAGATACGTATTCTCCAGATACGGTGGGATACGATTTAATACGTGATTTAATTTCAGTAATAAGGGCCAGGAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCGAGGGGATGTGA |
Protein Sequence
|
MWDPLVNEFPETVHGFRCMLAVKYLQLVADTYSPDTVGYDLIRDLISVIRARNYVEATSRYNHFHARLEGTPPSELRQPICEPCCCPHCPRHKGKGMGEQAHEQKAQDVQDVQKSRCSEGM |
NCBI Accession
|
YP_009112873.1
|
Location
|
302-1072 |
Gene Name
|
CP |
Protein Name
|
Coat Protein |
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCCTCGAAGGTACGCCGCCGTCTGAACTTCGACAGCCCATATGCGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACAAAGGCAAGGGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTTCCGAGGGGATGTGAAGGCCCATGCAAGGTCCAGTCATTTGAGTCCAGACATGATATCCAGCACATTGGTAAAGTCATGTGTGTTAGTGATGTTACTCGTGGTATTGGGCTGACCCACAGGGTTGGCAAGAGGTTCTGTGTTAAGTCCGTTTATGTTCTGGGCAAAATCTGGATGGATGAGAACATCAAGACTAAGAATCATACGAATAGTGTCATGTTTTTTCTTGTTAGGGATCGTAGACCCGTTGACAAGCCTCAAGATTTTGGTGAGGTTTTTAACATGTTTGATAATGAGCCCAGCACGGCGACTGTGAAGAATGTTCATCGTGATAGATACCAGGTATTAAGGAAGTGGCACGCAACTGTGACAGGTGGTCTATATGCATCGAAGGAGCAGGCTCTCGTGAAGAAGTTTATTAGGGTTAATAATTATGTTGTGTACAACCAGCAAGAGGCTGGCAAGTATGAGAATCATACTGAGAATGCATTGATGTTGTATATGGCGTGTACGCACGCCTCTAACCCTGTGTATGCTACATTGAAGATACGGATCTATTTTTATGATTCAGTATCGAATTAA |
Protein Sequence
|
MSKRPADIIISTPASKVRRRLNFDSPYASRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGIGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGLYASKEQALVKKFIRVNNYVVYNQQEAGKYENHTENALMLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession
|
YP_009112874.1
|
Location
|
1069-1473 |
Gene Name
|
REn |
Protein Name
|
Replication Enhancer Protein |
Coding Region
|
ATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTCTACTTCAAGATAACAGAACACCACAGCAGGCCACTCAACATGAACCACGACATCATCAACATCAGGGTCCAGTTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAAGTGTTACTTGGGCCTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAAGACTCAAGTTTTACGATATTTAGATAGTTTAGGCGTAATTAGTATAAATAATTGTATTAAGGCTTTCAGACATGTATTATATGATGTACTTGAGGGCACAATTAATGTAATTGAGAATCATGATATAAAATTCAATATTTATTAA |
Protein Sequence
|
MDSRTGESITAAQAENGVYIWEIQNPLYFKITEHHSRPLNMNHDIINIRVQFNHNLRKRLGIMKCYLGLRIHTRLHPQTGHFLRVFKTQVLRYLDSLGVISINNCIKAFRHVLYDVLEGTINVIENHDIKFNIY |
NCBI Accession
|
YP_009112875.1
|
Location
|
1214-1621 |
Gene Name
|
TrAP |
Protein Name
|
Transactivator Protein |
Coding Region
|
ATGCAACCTTCATCTCCCTCGAAGGCCCACTATACTCAGGTTCCAATCAAGGTCCAACACAGAGCTGCTAAGCGTAGAGCCATCCGGCGTAAGAGGGTTGATCTAAACTGTGGGTGCTCATACTACGTACACATCAACTGCCACAACCATGGATTCACGCACAGGGGAATCCATCACTGCAGCTCAAGCAGAGAATGGCGTGTATATCTGGGAGATTCAAAATCCCCTCTACTTCAAGATAACAGAACACCACAGCAGGCCACTCAACATGAACCACGACATCATCAACATCAGGGTCCAGTTCAATCACAACCTCAGGAAGAGACTGGGGATAATGAAGTGTTACTTGGGCCTGAGGATCCACACTCGTTTACATCCTCAGACTGGGCATTTCTTAAGAGTCTTTAA |
Protein Sequence
|
MQPSSPSKAHYTQVPIKVQHRAAKRRAIRRKRVDLNCGCSYYVHINCHNHGFTHRGIHHCSSSREWRVYLGDSKSPLLQDNRTPQQATQHEPRHHQHQGPVQSQPQEETGDNEVLLGPEDPHSFTSSDWAFLKSL |
NCBI Accession
|
YP_009112876.1
|
Location
|
1551-2609 |
Gene Name
|
Rep |
Protein Name
|
replication associated Protein |
Coding Region
|
ATGCCTCGTACACACCAGTTCCAAGTGAAGGCCAAAAATATCTTCCTCACTTATCCGAAATGTCCATTACCAAAGGAGCAAATGCTCGAACTCCTTAAAAACATTTCCTGTCCTTCTGATAAATTATTTATCAGAGTGTCACAAGAAAAACACCAAGATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCCAGTTCAGAAACCCCAGACATTTTGATGTCACTCACCCCTATACCTCAACTCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGAGTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAGAGGCGTTAAATGCCGGTTCTGCTGACGCAGCTTTAGCAATAATTAGGGAAAAACTCCCTAAAGATTTTATTTTTCAATATCATAATTTAAAATGTAATTTAGATAGGATTTTTACACCTCCTGTAGAGGTTTATGTTTCTCCTTTTTCGTCTTCTTCCTTTGATCAAGTTCCCGAAGAACTTGAGGAGTGGGCTGCCGAGAATGTTGTCAGTGCCGCTGCGCGGCCTTTGAGACCCATAAGTATAGTCATAGAGGGTGACAGTAGAACGGGAAAGACGATGTGGGCCAGATCACTTGGACCACATAATTATCTGTGTGGGCATCTAGACCTTAGCCCAAAGGTCTACAATAATGAGGCCTGGTACAACGTCATTGATGACGTTGATCCCCACTACCTAAAGCACTTTAAAGAGTTCATGGGGGCCCAAAGGGACTGGCAATCAAATACAAAGTACGGGAAGCCAGTTCAAATTAAAGGTGGTATTCCCACTATCTTCCTCTGCAATCCTGGGCCCAATTCCAGCTATAAGGAGTACCTGGACGAGGAGAAGAATAGCGCATTGAAAGCCTGGGCACTAAAAAATGCAACCTTCATCTCCCTCGAAGGCCCACTATACTCAGGTTCCAATCAAGGTCCAACACAGAGCTGCTAA |
Protein Sequence
|
MPRTHQFQVKAKNIFLTYPKCPLPKEQMLELLKNISCPSDKLFIRVSQEKHQDGSLHIHALIQFKGKSQFRNPRHFDVTHPYTSTQFHPNFQGAKSSSDVKSYIEKDGDYIDWGEFQIDGRSARGGQQTANDVAAEALNAGSADAALAIIREKLPKDFIFQYHNLKCNLDRIFTPPVEVYVSPFSSSSFDQVPEELEEWAAENVVSAAARPLRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYNNEAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKAWALKNATFISLEGPLYSGSNQGPTQSC |
NCBI Accession
|
YP_009112877.1
|
Location
|
2195-2452 |
Gene Name
|
C4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGTCTCTGCATATCCATGCCCTCATCCAGTTCAAAGGTAAATCCCAGTTCAGAAACCCCAGACATTTTGATGTCACTCACCCCTATACCTCAACTCAATTCCACCCAAACTTCCAGGGAGCTAAGTCCAGCTCTGATGTCAAGTCCTACATCGAGAAGGACGGTGATTACATCGACTGGGGTGAGTTTCAGATCGATGGAAGATCTGCTCGAGGAGGTCAACAGACAGCTAATGATGTTGCAGCAGAGGCGTTAA |
Protein Sequence
|
MGLCISMPSSSSKVNPSSETPDILMSLTPIPQLNSTQTSRELSPALMSSPTSRRTVITSTGVSFRSMEDLLEEVNRQLMMLQQRR |