Vernonia yellow vein virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000864465.1 |
Isolate |
India:Madurai |
Release date |
2015/2/13 |
Submitter |
Packialakshmi,R.M., Srivastava,N., Girish,K.R., Usha,R. |
Host |
|
Vector |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGAAATTTTTTTTGGGCCCCACCACGTGCTCTGTCTTTAAATCTTGTCCGCTCCTCAAAGTCTTATTAGTTCGTGGTCCCCTATAAAGATTGGTCTCCAAGTTTTCATTTTCAAAAATGTGGGATCCCCTTTTGCATGAGTTCCCTGAAACCGTACATGGTCTTCGTTGTATGCTAGCGGTTAAGTATTTATCCGCCGTGGCAGATACGTATTCTCCTGATACCTTAGGTTTCGATCTTCTTAGGGATTTAATTTGTGTCGTTAGGGCTCGTAATTATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGATGTACCAAAGGGCTGTGAAGGCCCATGTAAGGTGCAGTCGTTTGAACAGCGTCATGATATTGCTCATACTGGCAAGGTGATATGTGTCTCGGATGTCACACGTGGTAATGGGTTGACTCATAGGGTTGGTAAACGTTTTTGTGTTAAGTCCATGTATGTGCTTGGTAAGGTGTGGATGGATGAAAACATCAAGACGAAGAACCATACGAACACAGTTATGTTCTATATTGTAAGAGATCGTCGTCCGTTTGGGACTCCCATGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTCAAAAATGATTTGAGGGATCGGTATCAGGTATTGCGGAAGTTCTACGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAGGCAATGGTTCAGAAATTCATGAGGCTGAATAATTATGTTGTTTACAATCATCAGGAGGCTGCTAAGTATGATAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTTTGAAGATACGGATATATTTTTATGACTCTGTATCAAATTAATAAAAATTAAATTTTATTATTTCGAATTGTTTTACATATATTGTTCCTGATAATACATTGTGTAATACATGATCTACTGCTCTAATTACAAGATTTAAAGAAATTACGCCTAAACTATCCAAGTATTTTAATACTTGTGTCTTAAATACTCTTAAGAAATGCGATGTCGCTGGACGTAAGTGACTCCAAATGGTGAAAGTCAGATAACATTTGCGTAGTCCCAGTGCTTTCCTCAGGTAGTGGTTGAATTGGATCCTGACTTCGATGATGTCCTTGTTCATGTTGAATGGTCGTTGTAGGTGCTTTAGGATCTTGAAATATAGGGGATTTGGAACTTCCCAGATAAATACGCCATTCTGAGCTTGAGCTGCAGTGATGGGTTCCCCTGTGTGTGAATCCATGGTTGTGGCAGTTGATGTGTCTGTATATTGAGCATCCACAGGGGAGGTCTATCCTCTTTCTTTTGATTGGTCTTGCTTTTGCTGCTCTATGTAGGGCTTTGATTGGCACTTGAGAACAGCGGCTCGTATAGGGTGAGGAAGGTTGCATTTTTGAGTGACCAGTCTCTTAATGCTTTGTTTTTTTCTTCGTCTAGGTATTCTTTATAGGATGATGTTGGCCCTGGATTGCATAGGAAGATTGTTGGAATCCCTCCTTTAATTTGAATGGGTTTTCCGTATTTCGTGTTGCTTTGCCACTCCCTTTGGGCCCCCATAAATTCTTTATAGTGTTTTAGGTAGTGGGGGTCAACATCGTCAATGACGTTATACCACGCGTCATTGCTGTATACTTTCGGGCTTAGGTCCAGGTGACCACATAGGTAGTTGTGTGGGCCTAGTGAACGAGCCCACATTGTCTTTCCTGTCCTGCTTTCTCCTTCTATTATTATACTGAGTGGTCGGAGTGGCCGCAGGCCGGCGTCGGAAATATTTTCCGATGCCCACTCTTCCATTTCCTCTGGTACATTATTAAAAGTAGAAGATAAAAAAGGCGAAATATAAATCTCTAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAATACAAAATCTTTGGGAGCTTTCTCCCTTAGTATATTGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAACTCCAAAGTCAAGGATGTCTCCGTCTTCTTCCATGTAGGATTTGACATCGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGTTTGTAGGTCGAAGAATCTGTTATTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGTCCCATCTTCGTGTAGTTCTCTGCAAACTCTGATGAACAGTTTATTTGTAGGTGTTTCTAGGTTTTTAATTTGGGAAAGGGTTTCTTCTTTTGTGAGTGAGCAGTGAGGGTATGTGAGGAAATAGTTCTTGGCATTTATTAAGAACCGTTTTGGGGGTGCCATGTTGACTTGGTCAATCGGGTCCTCTCAAACTATCGTATGCAATCGGGGAATGGGTCTCAATATATAGGTGAGGACCTAAATGGCATGGATTGTAATTTCGGAATGAAATTCAAATTTCAAATTGGTAAAGCGGCCATCCGTCTAATATT
Gene Information
NCBI Accession
|
YP_459925.1
|
Location
|
129-476 |
Gene Name
|
av2 |
Protein Name
|
AV2 protein |
Coding Region
|
ATGTGGGATCCCCTTTTGCATGAGTTCCCTGAAACCGTACATGGTCTTCGTTGTATGCTAGCGGTTAAGTATTTATCCGCCGTGGCAGATACGTATTCTCCTGATACCTTAGGTTTCGATCTTCTTAGGGATTTAATTTGTGTCGTTAGGGCTCGTAATTATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGA |
Protein Sequence
|
MWDPLLHEFPETVHGLRCMLAVKYLSAVADTYSPDTLGFDLLRDLICVVRARNYVEATSRYSDFNSRIQSTSSSEFRQPLFSTCCCPHCPRHQKTNVDQQAHVPKAQALSDVQKQ |
NCBI Accession
|
YP_459926.1
|
Location
|
289-1059 |
Gene Name
|
av1 |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGATGTACCAAAGGGCTGTGAAGGCCCATGTAAGGTGCAGTCGTTTGAACAGCGTCATGATATTGCTCATACTGGCAAGGTGATATGTGTCTCGGATGTCACACGTGGTAATGGGTTGACTCATAGGGTTGGTAAACGTTTTTGTGTTAAGTCCATGTATGTGCTTGGTAAGGTGTGGATGGATGAAAACATCAAGACGAAGAACCATACGAACACAGTTATGTTCTATATTGTAAGAGATCGTCGTCCGTTTGGGACTCCCATGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTCAAAAATGATTTGAGGGATCGGTATCAGGTATTGCGGAAGTTCTACGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAGGCAATGGTTCAGAAATTCATGAGGCTGAATAATTATGTTGTTTACAATCATCAGGAGGCTGCTAAGTATGATAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTTTGAAGATACGGATATATTTTTATGACTCTGTATCAAATTAA |
Protein Sequence
|
MSKRPADIVISTPVSKVRRRLNFDSPYSRRAAVPTVRVTKRQMWTNRPMYRKPRLYRMYKSNDVPKGCEGPCKVQSFEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSMYVLGKVWMDENIKTKNHTNTVMFYIVRDRRPFGTPMDFGQVFNMYDNEPSTATVKNDLRDRYQVLRKFYATVTGGQYASKEQAMVQKFMRLNNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN |
NCBI Accession
|
YP_459927.2
|
Location
|
319-993 |
Gene Name
|
ac5 |
Protein Name
|
AC5 protein |
Coding Region
|
ATGAGTACATGCCATATACAACAACAAAGCGTTCTCAGTATGGTTATCATACTTAGCAGCCTCCTGATGATTGTAAACAACATAATTATTCAGCCTCATGAATTTCTGAACCATTGCCTGCTCCTTGCTTGCATACTGACCACCAGTAACAGTTGCGTAGAACTTCCGCAATACCTGATACCGATCCCTCAAATCATTTTTGACAGTAGCAGTGCTAGGCTCATTATCATACATGTTAAAAACCTGACCAAAATCCATGGGAGTCCCAAACGGACGACGATCTCTTACAATATAGAACATAACTGTGTTCGTATGGTTCTTCGTCTTGATGTTTTCATCCATCCACACCTTACCAAGCACATACATGGACTTAACACAAAAACGTTTACCAACCCTATGAGTCAACCCATTACCACGTGTGACATCCGAGACACATATCACCTTGCCAGTATGAGCAATATCATGACGCTGTTCAAACGACTGCACCTTACATGGGCCTTCACAGCCCTTTGGTACATCATTGCTTTTGTACATCCGATAGAGCCTGGGCTTTCGGTACATGGGCCTGTTGGTCCACATTTGTCTTTTGGTGACGCGGACAGTGGGGACAGCAGCACGTCGAGAATAGGGGCTGTCGAAATTCAGACGACGACGTACTTTGGATACGGGAGTTGA |
Protein Sequence
|
MSTCHIQQQSVLSMVIILSSLLMIVNNIIIQPHEFLNHCLLLACILTTSNSCVELPQYLIPIPQIIFDSSSARLIIIHVKNLTKIHGSPKRTTISYNIEHNCVRMVLRLDVFIHPHLTKHIHGLNTKTFTNPMSQPITTCDIRDTYHLASMSNIMTLFKRLHLTWAFTALWYIIAFVHPIEPGLSVHGPVGPHLSFGDADSGDSSTSRIGAVEIQTTTYFGYGS |
NCBI Accession
|
YP_459928.2
|
Location
|
1056-1460 |
Gene Name
|
ac3 |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAAGACACAAGTATTAAAATACTTGGATAGTTTAGGCGTAATTTCTTTAAATCTTGTAATTAGAGCAGTAGATCATGTATTACACAATGTATTATCAGGAACAATATATGTAAAACAATTCGAAATAATAAAATTTAATTTTTATTAA |
Protein Sequence
|
MDSHTGEPITAAQAQNGVFIWEVPNPLYFKILKHLQRPFNMNKDIIEVRIQFNHYLRKALGLRKCYLTFTIWSHLRPATSHFLRVFKTQVLKYLDSLGVISLNLVIRAVDHVLHNVLSGTIYVKQFEIIKFNFY |
NCBI Accession
|
YP_459929.2
|
Location
|
1201-1608 |
Gene Name
|
ac2 |
Protein Name
|
transactivator protein |
Coding Region
|
ATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAGAGCAGCAAAAGCAAGACCAATCAAAAGAAAGAGGATAGACCTCCCCTGTGGATGCTCAATATACAGACACATCAACTGCCACAACCATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAA |
Protein Sequence
|
MQPSSPYTSRCSQVPIKALHRAAKARPIKRKRIDLPCGCSIYRHINCHNHGFTHRGTHHCSSSSEWRIYLGSSKSPIFQDPKAPTTTIQHEQGHHRSQDPIQPLPEESTGTTQMLSDFHHLESLTSSDIAFLKSI |
NCBI Accession
|
YP_459930.2
|
Location
|
1547-2596 |
Gene Name
|
ac1 |
Protein Name
|
replication initiator protein |
Coding Region
|
ATGGCACCCCCAAAACGGTTCTTAATAAATGCCAAGAACTATTTCCTCACATACCCTCACTGCTCACTCACAAAAGAAGAAACCCTTTCCCAAATTAAAAACCTAGAAACACCTACAAATAAACTGTTCATCAGAGTTTGCAGAGAACTACACGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAAGGGAGAAAGCTCCCAAAGATTTTGTATTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCATTAGAGATTTATATTTCGCCTTTTTTATCTTCTACTTTTAATAATGTACCAGAGGAAATGGAAGAGTGGGCATCGGAAAATATTTCCGACGCCGGCCTGCGGCCACTCCGACCACTCAGTATAATAATAGAAGGAGAAAGCAGGACAGGAAAGACAATGTGGGCTCGTTCACTAGGCCCACACAACTACCTATGTGGTCACCTGGACCTAAGCCCGAAAGTATACAGCAATGACGCGTGGTATAACGTCATTGACGATGTTGACCCCCACTACCTAAAACACTATAAAGAATTTATGGGGGCCCAAAGGGAGTGGCAAAGCAACACGAAATACGGAAAACCCATTCAAATTAAAGGAGGGATTCCAACAATCTTCCTATGCAATCCAGGGCCAACATCATCCTATAAAGAATACCTAGACGAAGAAAAAAACAAAGCATTAAGAGACTGGTCACTCAAAAATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAG |
Protein Sequence
|
MAPPKRFLINAKNYFLTYPHCSLTKEETLSQIKNLETPTNKLFIRVCRELHEDGTPHLHVLIQFEGKFKCQNNRFFDLQTPSRSAHFHPNIQGAKSSSDVKSYMEEDGDILDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFHNLNSNLDRIFTPPLEIYISPFLSSTFNNVPEEMEEWASENISDAGLRPLRPLSIIIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHYKEFMGAQREWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNKALRDWSLKNATFLTLYEPLFSSANQSPT |
NCBI Accession
|
YP_459931.1
|
Location
|
2146-2439 |
Gene Name
|
ac4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAA |
Protein Sequence
|
MGLLTCMSSSSSKANSNAKITDSSTYKPQAGQHISIRTFRELKAQAMSNPTWKKTETSLTLEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY |