Vernonia yellow vein virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000864465.1
Isolate India:Madurai
Release date 2015/2/13
Submitter Packialakshmi,R.M., Srivastava,N., Girish,K.R., Usha,R.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_007730
ACCGGATGGCCGCGAAATTTTTTTTGGGCCCCACCACGTGCTCTGTCTTTAAATCTTGTCCGCTCCTCAAAGTCTTATTAGTTCGTGGTCCCCTATAAAGATTGGTCTCCAAGTTTTCATTTTCAAAAATGTGGGATCCCCTTTTGCATGAGTTCCCTGAAACCGTACATGGTCTTCGTTGTATGCTAGCGGTTAAGTATTTATCCGCCGTGGCAGATACGTATTCTCCTGATACCTTAGGTTTCGATCTTCTTAGGGATTTAATTTGTGTCGTTAGGGCTCGTAATTATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGATGTACCAAAGGGCTGTGAAGGCCCATGTAAGGTGCAGTCGTTTGAACAGCGTCATGATATTGCTCATACTGGCAAGGTGATATGTGTCTCGGATGTCACACGTGGTAATGGGTTGACTCATAGGGTTGGTAAACGTTTTTGTGTTAAGTCCATGTATGTGCTTGGTAAGGTGTGGATGGATGAAAACATCAAGACGAAGAACCATACGAACACAGTTATGTTCTATATTGTAAGAGATCGTCGTCCGTTTGGGACTCCCATGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTCAAAAATGATTTGAGGGATCGGTATCAGGTATTGCGGAAGTTCTACGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAGGCAATGGTTCAGAAATTCATGAGGCTGAATAATTATGTTGTTTACAATCATCAGGAGGCTGCTAAGTATGATAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTTTGAAGATACGGATATATTTTTATGACTCTGTATCAAATTAATAAAAATTAAATTTTATTATTTCGAATTGTTTTACATATATTGTTCCTGATAATACATTGTGTAATACATGATCTACTGCTCTAATTACAAGATTTAAAGAAATTACGCCTAAACTATCCAAGTATTTTAATACTTGTGTCTTAAATACTCTTAAGAAATGCGATGTCGCTGGACGTAAGTGACTCCAAATGGTGAAAGTCAGATAACATTTGCGTAGTCCCAGTGCTTTCCTCAGGTAGTGGTTGAATTGGATCCTGACTTCGATGATGTCCTTGTTCATGTTGAATGGTCGTTGTAGGTGCTTTAGGATCTTGAAATATAGGGGATTTGGAACTTCCCAGATAAATACGCCATTCTGAGCTTGAGCTGCAGTGATGGGTTCCCCTGTGTGTGAATCCATGGTTGTGGCAGTTGATGTGTCTGTATATTGAGCATCCACAGGGGAGGTCTATCCTCTTTCTTTTGATTGGTCTTGCTTTTGCTGCTCTATGTAGGGCTTTGATTGGCACTTGAGAACAGCGGCTCGTATAGGGTGAGGAAGGTTGCATTTTTGAGTGACCAGTCTCTTAATGCTTTGTTTTTTTCTTCGTCTAGGTATTCTTTATAGGATGATGTTGGCCCTGGATTGCATAGGAAGATTGTTGGAATCCCTCCTTTAATTTGAATGGGTTTTCCGTATTTCGTGTTGCTTTGCCACTCCCTTTGGGCCCCCATAAATTCTTTATAGTGTTTTAGGTAGTGGGGGTCAACATCGTCAATGACGTTATACCACGCGTCATTGCTGTATACTTTCGGGCTTAGGTCCAGGTGACCACATAGGTAGTTGTGTGGGCCTAGTGAACGAGCCCACATTGTCTTTCCTGTCCTGCTTTCTCCTTCTATTATTATACTGAGTGGTCGGAGTGGCCGCAGGCCGGCGTCGGAAATATTTTCCGATGCCCACTCTTCCATTTCCTCTGGTACATTATTAAAAGTAGAAGATAAAAAAGGCGAAATATAAATCTCTAATGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAATACAAAATCTTTGGGAGCTTTCTCCCTTAGTATATTGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCTGATCTTCCATCGATTTGGAAAACTCCAAAGTCAAGGATGTCTCCGTCTTCTTCCATGTAGGATTTGACATCGCTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGCTTGGGGTTTGTAGGTCGAAGAATCTGTTATTTTGGCATTTGAATTTGCCTTCGAACTGGATGAGGACATGCAGGTGAGGAGTCCCATCTTCGTGTAGTTCTCTGCAAACTCTGATGAACAGTTTATTTGTAGGTGTTTCTAGGTTTTTAATTTGGGAAAGGGTTTCTTCTTTTGTGAGTGAGCAGTGAGGGTATGTGAGGAAATAGTTCTTGGCATTTATTAAGAACCGTTTTGGGGGTGCCATGTTGACTTGGTCAATCGGGTCCTCTCAAACTATCGTATGCAATCGGGGAATGGGTCTCAATATATAGGTGAGGACCTAAATGGCATGGATTGTAATTTCGGAATGAAATTCAAATTTCAAATTGGTAAAGCGGCCATCCGTCTAATATT

Gene Information

NCBI Accession YP_459925.1
Location 129-476
Gene Name av2
Protein Name AV2 protein
Coding Region ATGTGGGATCCCCTTTTGCATGAGTTCCCTGAAACCGTACATGGTCTTCGTTGTATGCTAGCGGTTAAGTATTTATCCGCCGTGGCAGATACGTATTCTCCTGATACCTTAGGTTTCGATCTTCTTAGGGATTTAATTTGTGTCGTTAGGGCTCGTAATTATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGA
Protein Sequence MWDPLLHEFPETVHGLRCMLAVKYLSAVADTYSPDTLGFDLLRDLICVVRARNYVEATSRYSDFNSRIQSTSSSEFRQPLFSTCCCPHCPRHQKTNVDQQAHVPKAQALSDVQKQ

NCBI Accession YP_459926.1
Location 289-1059
Gene Name av1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAGTGATTTCAACTCCCGTATCCAAAGTACGTCGTCGTCTGAATTTCGACAGCCCCTATTCTCGACGTGCTGCTGTCCCCACTGTCCGCGTCACCAAAAGACAAATGTGGACCAACAGGCCCATGTACCGAAAGCCCAGGCTCTATCGGATGTACAAAAGCAATGATGTACCAAAGGGCTGTGAAGGCCCATGTAAGGTGCAGTCGTTTGAACAGCGTCATGATATTGCTCATACTGGCAAGGTGATATGTGTCTCGGATGTCACACGTGGTAATGGGTTGACTCATAGGGTTGGTAAACGTTTTTGTGTTAAGTCCATGTATGTGCTTGGTAAGGTGTGGATGGATGAAAACATCAAGACGAAGAACCATACGAACACAGTTATGTTCTATATTGTAAGAGATCGTCGTCCGTTTGGGACTCCCATGGATTTTGGTCAGGTTTTTAACATGTATGATAATGAGCCTAGCACTGCTACTGTCAAAAATGATTTGAGGGATCGGTATCAGGTATTGCGGAAGTTCTACGCAACTGTTACTGGTGGTCAGTATGCAAGCAAGGAGCAGGCAATGGTTCAGAAATTCATGAGGCTGAATAATTATGTTGTTTACAATCATCAGGAGGCTGCTAAGTATGATAACCATACTGAGAACGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCTAATCCAGTGTATGCTACTTTGAAGATACGGATATATTTTTATGACTCTGTATCAAATTAA
Protein Sequence MSKRPADIVISTPVSKVRRRLNFDSPYSRRAAVPTVRVTKRQMWTNRPMYRKPRLYRMYKSNDVPKGCEGPCKVQSFEQRHDIAHTGKVICVSDVTRGNGLTHRVGKRFCVKSMYVLGKVWMDENIKTKNHTNTVMFYIVRDRRPFGTPMDFGQVFNMYDNEPSTATVKNDLRDRYQVLRKFYATVTGGQYASKEQAMVQKFMRLNNYVVYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVSN

NCBI Accession YP_459927.2
Location 319-993
Gene Name ac5
Protein Name AC5 protein
Coding Region ATGAGTACATGCCATATACAACAACAAAGCGTTCTCAGTATGGTTATCATACTTAGCAGCCTCCTGATGATTGTAAACAACATAATTATTCAGCCTCATGAATTTCTGAACCATTGCCTGCTCCTTGCTTGCATACTGACCACCAGTAACAGTTGCGTAGAACTTCCGCAATACCTGATACCGATCCCTCAAATCATTTTTGACAGTAGCAGTGCTAGGCTCATTATCATACATGTTAAAAACCTGACCAAAATCCATGGGAGTCCCAAACGGACGACGATCTCTTACAATATAGAACATAACTGTGTTCGTATGGTTCTTCGTCTTGATGTTTTCATCCATCCACACCTTACCAAGCACATACATGGACTTAACACAAAAACGTTTACCAACCCTATGAGTCAACCCATTACCACGTGTGACATCCGAGACACATATCACCTTGCCAGTATGAGCAATATCATGACGCTGTTCAAACGACTGCACCTTACATGGGCCTTCACAGCCCTTTGGTACATCATTGCTTTTGTACATCCGATAGAGCCTGGGCTTTCGGTACATGGGCCTGTTGGTCCACATTTGTCTTTTGGTGACGCGGACAGTGGGGACAGCAGCACGTCGAGAATAGGGGCTGTCGAAATTCAGACGACGACGTACTTTGGATACGGGAGTTGA
Protein Sequence MSTCHIQQQSVLSMVIILSSLLMIVNNIIIQPHEFLNHCLLLACILTTSNSCVELPQYLIPIPQIIFDSSSARLIIIHVKNLTKIHGSPKRTTISYNIEHNCVRMVLRLDVFIHPHLTKHIHGLNTKTFTNPMSQPITTCDIRDTYHLASMSNIMTLFKRLHLTWAFTALWYIIAFVHPIEPGLSVHGPVGPHLSFGDADSGDSSTSRIGAVEIQTTTYFGYGS

NCBI Accession YP_459928.2
Location 1056-1460
Gene Name ac3
Protein Name replication enhancer protein
Coding Region ATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAAGACACAAGTATTAAAATACTTGGATAGTTTAGGCGTAATTTCTTTAAATCTTGTAATTAGAGCAGTAGATCATGTATTACACAATGTATTATCAGGAACAATATATGTAAAACAATTCGAAATAATAAAATTTAATTTTTATTAA
Protein Sequence MDSHTGEPITAAQAQNGVFIWEVPNPLYFKILKHLQRPFNMNKDIIEVRIQFNHYLRKALGLRKCYLTFTIWSHLRPATSHFLRVFKTQVLKYLDSLGVISLNLVIRAVDHVLHNVLSGTIYVKQFEIIKFNFY

NCBI Accession YP_459929.2
Location 1201-1608
Gene Name ac2
Protein Name transactivator protein
Coding Region ATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAGAGCAGCAAAAGCAAGACCAATCAAAAGAAAGAGGATAGACCTCCCCTGTGGATGCTCAATATACAGACACATCAACTGCCACAACCATGGATTCACACACAGGGGAACCCATCACTGCAGCTCAAGCTCAGAATGGCGTATTTATCTGGGAAGTTCCAAATCCCCTATATTTCAAGATCCTAAAGCACCTACAACGACCATTCAACATGAACAAGGACATCATCGAAGTCAGGATCCAATTCAACCACTACCTGAGGAAAGCACTGGGACTACGCAAATGTTATCTGACTTTCACCATTTGGAGTCACTTACGTCCAGCGACATCGCATTTCTTAAGAGTATTTAA
Protein Sequence MQPSSPYTSRCSQVPIKALHRAAKARPIKRKRIDLPCGCSIYRHINCHNHGFTHRGTHHCSSSSEWRIYLGSSKSPIFQDPKAPTTTIQHEQGHHRSQDPIQPLPEESTGTTQMLSDFHHLESLTSSDIAFLKSI

NCBI Accession YP_459930.2
Location 1547-2596
Gene Name ac1
Protein Name replication initiator protein
Coding Region ATGGCACCCCCAAAACGGTTCTTAATAAATGCCAAGAACTATTTCCTCACATACCCTCACTGCTCACTCACAAAAGAAGAAACCCTTTCCCAAATTAAAAACCTAGAAACACCTACAAATAAACTGTTCATCAGAGTTTGCAGAGAACTACACGAAGATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAAGGGAGAAAGCTCCCAAAGATTTTGTATTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCATTAGAGATTTATATTTCGCCTTTTTTATCTTCTACTTTTAATAATGTACCAGAGGAAATGGAAGAGTGGGCATCGGAAAATATTTCCGACGCCGGCCTGCGGCCACTCCGACCACTCAGTATAATAATAGAAGGAGAAAGCAGGACAGGAAAGACAATGTGGGCTCGTTCACTAGGCCCACACAACTACCTATGTGGTCACCTGGACCTAAGCCCGAAAGTATACAGCAATGACGCGTGGTATAACGTCATTGACGATGTTGACCCCCACTACCTAAAACACTATAAAGAATTTATGGGGGCCCAAAGGGAGTGGCAAAGCAACACGAAATACGGAAAACCCATTCAAATTAAAGGAGGGATTCCAACAATCTTCCTATGCAATCCAGGGCCAACATCATCCTATAAAGAATACCTAGACGAAGAAAAAAACAAAGCATTAAGAGACTGGTCACTCAAAAATGCAACCTTCCTCACCCTATACGAGCCGCTGTTCTCAAGTGCCAATCAAAGCCCTACATAG
Protein Sequence MAPPKRFLINAKNYFLTYPHCSLTKEETLSQIKNLETPTNKLFIRVCRELHEDGTPHLHVLIQFEGKFKCQNNRFFDLQTPSRSAHFHPNIQGAKSSSDVKSYMEEDGDILDFGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFHNLNSNLDRIFTPPLEIYISPFLSSTFNNVPEEMEEWASENISDAGLRPLRPLSIIIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHYKEFMGAQREWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEEKNKALRDWSLKNATFLTLYEPLFSSANQSPT

NCBI Accession YP_459931.1
Location 2146-2439
Gene Name ac4
Protein Name AC4 protein
Coding Region ATGGGACTCCTCACCTGCATGTCCTCATCCAGTTCGAAGGCAAATTCAAATGCCAAAATAACAGATTCTTCGACCTACAAACCCCAAGCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAAGCGATGTCAAATCCTACATGGAAGAAGACGGAGACATCCTTGACTTTGGAGTTTTCCAAATCGATGGAAGATCAGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATACTAA
Protein Sequence MGLLTCMSSSSSKANSNAKITDSSTYKPQAGQHISIRTFRELKAQAMSNPTWKKTETSLTLEFSKSMEDQLEEVANLPTTHMPRQSIQGPKLRPSIY