Vernonia crinkle virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_001907745.1
Isolate Uganda
Release date 2016/12/18
Submitter Mollel,H.G., Ndunguru,J., Sseruwagi,P., Alicai,T., Colvin,J., Navas-Castillo,J., Fiallo-Olive,E.
Host
Vector
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_032118
ACCGGGTGGCCGCGGTTTTTTTTAGGGCTACGTGGACGAACGACAGCCAAGGAATTTGAAAAAACGAAACTTAGACGCGCCTTGGGGACCACGGTGAAAAATCAACCAATAGGGGCGCAGCCTTTGTCTTTAGTTTGAATTAGGGTTTCTTTAAGACTTGCCTACTAAGCTACGGCTTTTAAGTCAAAAATGTTCGACCCTCTACTGAACCCTTTTCCTCGTTCGTATCATGGATTTCGTATTATGCTTGCTGTAAAATATTTACAGATCTGTCAGGAAAAATACTCCAACGGTACTAAGGGACATACGTATTTACAGGAATTGATACGTATTCTACGACGCAGCGATTTCAATGAAGCGTCCGATCAATATACCGATTTCATCACCGTCTTTGGTGAGCAAAGTCCGACGGAGGCTGAACTTCGACAGCCCAGCTTCTGCGAGGCCCATTTCTCCCTATGTCCGAAGTGCTCGGGCCCAATGGCAAAACAGGCCCATGTTCAGGAAGCCCAGGATATACCGAATGTATCGTTCGTCGGACGTTCCCCGGGGCTGTGAAGGCCCGTGTAAGATCCAGTCATTTGATCAGCGTGATTCCGTTGTTCATACGGGTAATGTTAGGTGTCTTAGTGATGTCACCCGTGGAAGTGGTCTTACACATCGTACTGGGAAACGTTTATGTATTAAATCTATTTACATAATAGGTAAGATCTGGATGGACGAGAATGTGAAGAAGTCCAATCATACTAACACGTGTATGTTTTGGTTAGTTAGGGATAGGCGTCCTTATGGAACTAGTCCTCAGGATTTTGGTCAGGTTTTTAACATGTTTGACAACGAGCCCAGTACTGCTACTGTGAAAAATGATATGCGTGATCGGTACCAGGTGTTGAGGAAATTCAAGGTGACCGTTACTGGAGGACCTTACGCTTGTAAAGAGTCTGCAATTGTTAATAAGTTTTTGAATCTGTACCATCATGTTACCTATAACCATCAGGAGGCAGCGAAGTACGAGAACCATACGGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCAAATCCTGTGTATGCAAGTCTGAAAATACGAATGTACTTCTATGACAGTGTAACGAATTGAAATTAATAAAGATTGAATTTTATATCATAATTTGTGTCTACATGTACAGTTTGTTCCAATACATTCCATAATACATGATTGATAGCCCTAATTACAATGTTAATTGTGACTATTCCTGCTTGGTTGATGTACTTCATGATCTGTGTCTTGAACACTCTCAAGAAATGCAATGTCTGAGGCTGTAAACCAGTCCAGATCTTCAAGTTGATAAAACACTTGTGAAGACCTAGAGCTTTCCGCAGGTTGTGGTTGAATCTGATTTGCAGGTGTATCACGTCTTTGTTCATTGTGAACGGTCGTTTGTGGTGTTCCAGTATGGTGAAGTACAGAGGGTTGTGGAGGTTCCAGATATACTCTCCATTCATTGCCTGAATTGCAGTAATGGGTTCCCCTGTGCGTGAATCCATGGTTCCTGCAATTGAGATGAATCAGGTAGGCGCAGCCGCAGGGAAGGTCAATCTTCTTCCGGCGTATTGACCTCCGTTTCTTCTCTCTGTGTTGGGCTTTGATGTTCGGTGGAGAAGAGTGGTTCGGTGATGGTGTGGAACAACGCATTTTTTATAGCCCAGTATTTTAGTGCGTTGTTTTTTTCCTCGTCAAGGAACTCTTTATAGGACGACGTTGGGCCCGGATTGCACAGGAAGATTGTTGGGATCCCGCCTTTAATTTGAATTGGTTTCCCGTACTTCGTGTTGCTTTGCCAGTCTCGTTGGGCCCCCATGAATTCCTTGAAATGTTTCAAATAATGAGGGTCAACATCGTCAATGATATTAAACCAGGCATCATTTGAATATATTTTAGGGCTTAGATCCAGATGTCCACATAAATAGTTATGAGGACCTAAGGAACGTGCCCATAATGTTTTTCCAGTACGTGAATCACCTTCTAATACTAAACTTAAGGGCCTTATTGGCCGCGCAGCGGCAGCACATACGTTTTCAGAAGCCCATTCTTCCAGTGTATCTGGAACGTTATTAAACGAAGAAGATAAAAACGGACTAATATATTGCTCCATAGGAGGAGCGAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACAAAATCTTTAGGAGCCTTCTCCTTTAATATATCGAGGGCCTGTGACTTAGACCCTGAATTGAGTGCCTCGGCATATGCGTCGTTGGCATTCTGGCAACCTCCTCTAGCAGATCGTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTAGGATTTAACATCGGAGCTAGACTTAGCTCCCTGGATGTTAGGATGGAATTGGGTTGAGCGATTAGGTGAGTTGAGGTCGAAGAAACGGTTGTTTCTGCACTTGAATTTTCCTTCGAATTGGATGAGCACGTGTAGATGAGGTTCCCCATTTTCATGTAATTCTCTGCAAATTCTGATGAATAATTTATTTGTTGGGGTATCTAGGGCTAGCAATTGTGAAAGTGCCTCTTCTTTGGTAAGTGAGCAGCGTGGATAAGTAAGGAAGAAGTTTCTGGCATTTACAAGAAAGGCCCCTGATCTTGGCATGTTTGGCAGAAATGTATCGGGGACACTCAAACTTGCTCTGCAATTGGGGACATCGGGGACGCATTTATACCTAGTCCCCAATACCGGCTCTGTCGGTCAAAAGCGGCCACCCGTATAATATT

Gene Information

NCBI Accession YP_009329828.1
Location 190-558
Gene Name AV2
Protein Name pre-coat protein
Coding Region ATGTTCGACCCTCTACTGAACCCTTTTCCTCGTTCGTATCATGGATTTCGTATTATGCTTGCTGTAAAATATTTACAGATCTGTCAGGAAAAATACTCCAACGGTACTAAGGGACATACGTATTTACAGGAATTGATACGTATTCTACGACGCAGCGATTTCAATGAAGCGTCCGATCAATATACCGATTTCATCACCGTCTTTGGTGAGCAAAGTCCGACGGAGGCTGAACTTCGACAGCCCAGCTTCTGCGAGGCCCATTTCTCCCTATGTCCGAAGTGCTCGGGCCCAATGGCAAAACAGGCCCATGTTCAGGAAGCCCAGGATATACCGAATGTATCGTTCGTCGGACGTTCCCCGGGGCTGTGA
Protein Sequence MFDPLLNPFPRSYHGFRIMLAVKYLQICQEKYSNGTKGHTYLQELIRILRRSDFNEASDQYTDFITVFGEQSPTEAELRQPSFCEAHFSLCPKCSGPMAKQAHVQEAQDIPNVSFVGRSPGL

NCBI Accession YP_009329829.1
Location 353-1126
Gene Name AV1
Protein Name coat protein
Coding Region ATGAAGCGTCCGATCAATATACCGATTTCATCACCGTCTTTGGTGAGCAAAGTCCGACGGAGGCTGAACTTCGACAGCCCAGCTTCTGCGAGGCCCATTTCTCCCTATGTCCGAAGTGCTCGGGCCCAATGGCAAAACAGGCCCATGTTCAGGAAGCCCAGGATATACCGAATGTATCGTTCGTCGGACGTTCCCCGGGGCTGTGAAGGCCCGTGTAAGATCCAGTCATTTGATCAGCGTGATTCCGTTGTTCATACGGGTAATGTTAGGTGTCTTAGTGATGTCACCCGTGGAAGTGGTCTTACACATCGTACTGGGAAACGTTTATGTATTAAATCTATTTACATAATAGGTAAGATCTGGATGGACGAGAATGTGAAGAAGTCCAATCATACTAACACGTGTATGTTTTGGTTAGTTAGGGATAGGCGTCCTTATGGAACTAGTCCTCAGGATTTTGGTCAGGTTTTTAACATGTTTGACAACGAGCCCAGTACTGCTACTGTGAAAAATGATATGCGTGATCGGTACCAGGTGTTGAGGAAATTCAAGGTGACCGTTACTGGAGGACCTTACGCTTGTAAAGAGTCTGCAATTGTTAATAAGTTTTTGAATCTGTACCATCATGTTACCTATAACCATCAGGAGGCAGCGAAGTACGAGAACCATACGGAGAATGCTTTGTTGTTGTATATGGCATGTACTCATGCTTCAAATCCTGTGTATGCAAGTCTGAAAATACGAATGTACTTCTATGACAGTGTAACGAATTGA
Protein Sequence MKRPINIPISSPSLVSKVRRRLNFDSPASARPISPYVRSARAQWQNRPMFRKPRIYRMYRSSDVPRGCEGPCKIQSFDQRDSVVHTGNVRCLSDVTRGSGLTHRTGKRLCIKSIYIIGKIWMDENVKKSNHTNTCMFWLVRDRRPYGTSPQDFGQVFNMFDNEPSTATVKNDMRDRYQVLRKFKVTVTGGPYACKESAIVNKFLNLYHHVTYNHQEAAKYENHTENALLLYMACTHASNPVYASLKIRMYFYDSVTN

NCBI Accession YP_009329830.1
Location 1129-1533
Gene Name AC3
Protein Name REn
Coding Region ATGGATTCACGCACAGGGGAACCCATTACTGCAATTCAGGCAATGAATGGAGAGTATATCTGGAACCTCCACAACCCTCTGTACTTCACCATACTGGAACACCACAAACGACCGTTCACAATGAACAAAGACGTGATACACCTGCAAATCAGATTCAACCACAACCTGCGGAAAGCTCTAGGTCTTCACAAGTGTTTTATCAACTTGAAGATCTGGACTGGTTTACAGCCTCAGACATTGCATTTCTTGAGAGTGTTCAAGACACAGATCATGAAGTACATCAACCAAGCAGGAATAGTCACAATTAACATTGTAATTAGGGCTATCAATCATGTATTATGGAATGTATTGGAACAAACTGTACATGTAGACACAAATTATGATATAAAATTCAATCTTTATTAA
Protein Sequence MDSRTGEPITAIQAMNGEYIWNLHNPLYFTILEHHKRPFTMNKDVIHLQIRFNHNLRKALGLHKCFINLKIWTGLQPQTLHFLRVFKTQIMKYINQAGIVTINIVIRAINHVLWNVLEQTVHVDTNYDIKFNLY

NCBI Accession YP_009329831.1
Location 1226-1681
Gene Name AC2
Protein Name TrAP
Coding Region ATGCGTTGTTCCACACCATCACCGAACCACTCTTCTCCACCGAACATCAAAGCCCAACACAGAGAGAAGAAACGGAGGTCAATACGCCGGAAGAAGATTGACCTTCCCTGCGGCTGCGCCTACCTGATTCATCTCAATTGCAGGAACCATGGATTCACGCACAGGGGAACCCATTACTGCAATTCAGGCAATGAATGGAGAGTATATCTGGAACCTCCACAACCCTCTGTACTTCACCATACTGGAACACCACAAACGACCGTTCACAATGAACAAAGACGTGATACACCTGCAAATCAGATTCAACCACAACCTGCGGAAAGCTCTAGGTCTTCACAAGTGTTTTATCAACTTGAAGATCTGGACTGGTTTACAGCCTCAGACATTGCATTTCTTGAGAGTGTTCAAGACACAGATCATGAAGTACATCAACCAAGCAGGAATAGTCACAATTAA
Protein Sequence MRCSTPSPNHSSPPNIKAQHREKKRRSIRRKKIDLPCGCAYLIHLNCRNHGFTHRGTHYCNSGNEWRVYLEPPQPSVLHHTGTPQTTVHNEQRRDTPANQIQPQPAESSRSSQVFYQLEDLDWFTASDIAFLESVQDTDHEVHQPSRNSHN

NCBI Accession YP_009329832.1
Location 1581-2669
Gene Name AC1
Protein Name Rep
Coding Region ATGCCAAGATCAGGGGCCTTTCTTGTAAATGCCAGAAACTTCTTCCTTACTTATCCACGCTGCTCACTTACCAAAGAAGAGGCACTTTCACAATTGCTAGCCCTAGATACCCCAACAAATAAATTATTCATCAGAATTTGCAGAGAATTACATGAAAATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAAGGAAAATTCAAGTGCAGAAACAACCGTTTCTTCGACCTCAACTCACCTAATCGCTCAACCCAATTCCATCCTAACATCCAGGGAGCTAAGTCTAGCTCCGATGTTAAATCCTACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGACGATCTGCTAGAGGAGGTTGCCAGAATGCCAACGACGCATATGCCGAGGCACTCAATTCAGGGTCTAAGTCACAGGCCCTCGATATATTAAAGGAGAAGGCTCCTAAAGATTTTGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTCGCTCCTCCTATGGAGCAATATATTAGTCCGTTTTTATCTTCTTCGTTTAATAACGTTCCAGATACACTGGAAGAATGGGCTTCTGAAAACGTATGTGCTGCCGCTGCGCGGCCAATAAGGCCCTTAAGTTTAGTATTAGAAGGTGATTCACGTACTGGAAAAACATTATGGGCACGTTCCTTAGGTCCTCATAACTATTTATGTGGACATCTGGATCTAAGCCCTAAAATATATTCAAATGATGCCTGGTTTAATATCATTGACGATGTTGACCCTCATTATTTGAAACATTTCAAGGAATTCATGGGGGCCCAACGAGACTGGCAAAGCAACACGAAGTACGGGAAACCAATTCAAATTAAAGGCGGGATCCCAACAATCTTCCTGTGCAATCCGGGCCCAACGTCGTCCTATAAAGAGTTCCTTGACGAGGAAAAAAACAACGCACTAAAATACTGGGCTATAAAAAATGCGTTGTTCCACACCATCACCGAACCACTCTTCTCCACCGAACATCAAAGCCCAACACAGAGAGAAGAAACGGAGGTCAATACGCCGGAAGAAGATTGA
Protein Sequence MPRSGAFLVNARNFFLTYPRCSLTKEEALSQLLALDTPTNKLFIRICRELHENGEPHLHVLIQFEGKFKCRNNRFFDLNSPNRSTQFHPNIQGAKSSSDVKSYMEKDGDVLDHGVFQIDGRSARGGCQNANDAYAEALNSGSKSQALDILKEKAPKDFVLQFHNLNANLDRIFAPPMEQYISPFLSSSFNNVPDTLEEWASENVCAAAARPIRPLSLVLEGDSRTGKTLWARSLGPHNYLCGHLDLSPKIYSNDAWFNIIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEFLDEEKNNALKYWAIKNALFHTITEPLFSTEHQSPTQREETEVNTPEED

NCBI Accession YP_009329833.1
Location 2219-2518
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGAAAATGGGGAACCTCATCTACACGTGCTCATCCAATTCGAAGGAAAATTCAAGTGCAGAAACAACCGTTTCTTCGACCTCAACTCACCTAATCGCTCAACCCAATTCCATCCTAACATCCAGGGAGCTAAGTCTAGCTCCGATGTTAAATCCTACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGACGATCTGCTAGAGGAGGTTGCCAGAATGCCAACGACGCATATGCCGAGGCACTCAATTCAGGGTCTAAGTCACAGGCCCTCGATATATTAA
Protein Sequence MKMGNLIYTCSSNSKENSSAETTVSSTSTHLIAQPNSILTSRELSLAPMLNPTWKKTETCLIMEFSRSMDDLLEEVARMPTTHMPRHSIQGLSHRPSIY