Tomato yellow leaf deformation dwarf virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_018587685.1
Isolate Brazil
Release date 2021/6/1
Submitter Pereira-Carvalho,R.C., Reis-Goncalves,V.P.M., Boiteux,L.S., Fonseca,M.E.N., Naito,F.Y., Rojas,M.R., Gilbertson,R.L.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_055586
ACTGGATGGCCGCGATTTTTTTCCCCCCCTCATGACGTGGCGCTCGCTCCCCGACCCGCTCCCGCAATTCGCGCCGCATTGTCGGCCATTATATGTGGTCCCTTTCAGATAAAGACAAATTTGACTGACCAATCCGACTTGGGCCTCTGGGCCTATTTGTTTAAAAATACTTGGGCGCTAAGTTGTTATATAAAGGGTTATGATATGATGGCCCAATAAGCTTTATTTCAAAAATGCCTAAGCGGTATCCCCCATTCCGCACAACGGCGGGAACGTCCAAGATTTCCCGCACGTCCAATTTATCTCCTCGTGGGGGTGTTCGGCCCAAATTCGACAAGGCCGCAGAGTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATATACCGGACGTTGAGAAGCCCAGACATTCCGAGGGGTTGTGAAGGGCCTTGTAAAGTCCAATCGTTCGAACAGCGTCATGACGTCTCTCATACCGGGAAGGTGTTGTGTATATCTGATGTGACACGGGGTAATGGCATTACTCACCGTGTCGGTAAACGTTTTTGCGTTAAGTCTGTATATATATTAGGGAAGGTATGGATGGACGACAATATTAAGCTGAAGAACCATACGAATAGCGTATTGTTCTGGTTAGTTAGGGACAGGAGGCCGTATGGTACCCCTATGGACTTCGGCCAGGTGTTCAACATGTACGATAACGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGCGATCGTCTCCAAGTCATGCACAGGTTCTCCGCGAAGGTTACGGGTGGACAGTATGCCAGTAACGAGCAGGCTGTGGTGCGGCGTTTTTGGAAGGTGTACAATCATGTGGTCTACAACCATCAGGAGGCCGCGAAGTACGAGAAYCACACGGAGAATGCCCTGTTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTATATGCAACCCTTAAGATCCGGATCTATTTTTATGATTCGATCTTAAATTAATAAAAATTGAACTTTATTGAATGATCCTCCAGTACATCTGTTACATACGTCTTGTCTGTTGCGAATTGAACAGCTCTAATGACATTATTAATTGAGATTACGCCTAATTGATCTAAATACATATTGACTAAGAATTTAAATCTATTTAAATAAGTCGTCCCAGAAGCTGTCAGAGAAGTCGTCCAGACTTGGAAGTTGAAGTATGCCTTGTGGAGATCCAACGCTCTCCTCAGGTTGTGGTTGAATCGTATCTGGACATGGTACACTGTCGTGTTGGCGTGGAGCAAAATCTCCACGTTGGTTATCTTGAAATACAGGGGATTTTGCACCTCCCAGGTATACACGCCATTCTCCGCTTGACGTCGCGTGATGCGTTCCCCTGTGCGTGAATCCATGTCCTCGGCAGTCGATGTGGAGGTATATTGAGCAACCGCACTCTAAATCAATTCGTCTTCTCCGAATGGCCCTCTTCTTCTTGGCTATTCTGTGTTGTGGTTTGATAGAGGGGGGAGTTGAGGAAGACGAATTTTGCATTGTGGAGAGTCCAGTTCTTGAGTGACAGATTCTCCTCTTTGTCGAGGAACTCTTTATAACTGGACCCCTCGCCTGGATTGCAAAGCACGATTGAGGGTATGCCGCCTTTAATTTGAACCGGCTTTCCGTATTTGCAATTTGATTGCCAGTCCCTTTGGGCCCCAATCAATTCTTTCCTGTGCTTCATCTTTAGGTAGTGCGGTGCGACGTCATCAATGACGTTATAATCCACATCATTTGAATAAACCCTAGAATTGAAATCCAGGTGTCCACTCAAATAATTGTGAGATCCCAAAGCACGTGCCCACATCGTCTTGCCGGTTCTTGAATCACCCTCCACGATGATGGACACTGGCCTGAGACTATTATGAAAATGTGGCCGCGCAGCGGAAAGACGACCAAAATAATCATCCGCCCACTCTTGCATCTCATCCGGAACGTTAGTGAAAGAGGAGAGTTGAAACGGAGGAGTCCATGGCTCCGGAGACTGAGCGAATATCTTGTGGATATTAGCACTGATGTTGTGATGTTGAACGATGAATGCCTTTGGATCTCCTGTCCGGATAATTGCAAGAGCCTCTGATGCAGAAGTGGCATTGATAGCGTTGTGATAGACGTCGTCTTTGTTGGTCTTTGTTCCGCCAGATATTTTGTATCGTCCGGATTCACAATAATCACCCTCTTTGGTGATGTAATTCTTGACGGCGTTGGCGTCTTTGGCTGCCTGGACGTTTGGGTGAAAATTGGCAGACCTTCTGGGGTGAGTAAGGTCGAAAAATCTAACATCCTTGATGTTCGACTTCCCTGATAGTTGTATGAGGCAGTGGAGATGAGGTTGTCCGTCAGTGTGTTCCTCTCTTGCGACTCTGATGTACGTCGGTTTGACGACCGTCCATTTGAGGGAATGAAGCATCCGAAGAACCTCATCTTTCTCTATGTCGCACTGTGGATAAGTGAGGAAGATGTTCTTAGCAGATAGCCTAAATGTAGTAGGTTGTCGTGGCATTTTTGTAAATATGAGCCAGGACACCAGGGATGGCTCTCAACTTCTGTGCTATTTGCTGGTGTCCTGGTGTCCCATTTATACTAAAACCTCCTTTGGACACCAGGGGTAAAAGCGGCCATCCTATAATATT

Gene Information

NCBI Accession YP_010087798.1
Location 234-989
Gene Name AC4
Protein Name Cp
Coding Region ATGCCTAAGCGGTATCCCCCATTCCGCACAACGGCGGGAACGTCCAAGATTTCCCGCACGTCCAATTTATCTCCTCGTGGGGGTGTTCGGCCCAAATTCGACAAGGCCGCAGAGTGGGTCAACAGGCCCATGTACAGGAAGCCCAGGATATACCGGACGTTGAGAAGCCCAGACATTCCGAGGGGTTGTGAAGGGCCTTGTAAAGTCCAATCGTTCGAACAGCGTCATGACGTCTCTCATACCGGGAAGGTGTTGTGTATATCTGATGTGACACGGGGTAATGGCATTACTCACCGTGTCGGTAAACGTTTTTGCGTTAAGTCTGTATATATATTAGGGAAGGTATGGATGGACGACAATATTAAGCTGAAGAACCATACGAATAGCGTATTGTTCTGGTTAGTTAGGGACAGGAGGCCGTATGGTACCCCTATGGACTTCGGCCAGGTGTTCAACATGTACGATAACGAGCCCAGTACTGCGACTGTGAAGAACGATCTCCGCGATCGTCTCCAAGTCATGCACAGGTTCTCCGCGAAGGTTACGGGTGGACAGTATGCCAGTAACGAGCAGGCTGTGGTGCGGCGTTTTTGGAAGGTGTACAATCATGTGGTCTACAACCATCAGGAGGCCGCGAAGTACGAGAAYCACACGGAGAATGCCCTGTTATTGTATATGGCATGTACTCATGCCTCGAACCCTGTATATGCAACCCTTAAGATCCGGATCTATTTTTATGATTCGATCTTAAATTAA
Protein Sequence MPKRYPPFRTTAGTSKISRTSNLSPRGGVRPKFDKAAEWVNRPMYRKPRIYRTLRSPDIPRGCEGPCKVQSFEQRHDVSHTGKVLCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVLFWLVRDRRPYGTPMDFGQVFNMYDNEPSTATVKNDLRDRLQVMHRFSAKVTGGQYASNEQAVVRRFWKVYNHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSILN

NCBI Accession YP_010087799.1
Location 986-1384
Gene Name AC3
Protein Name Ren
Coding Region ATGGATTCACGCACAGGGGAACGCATCACGCGACGTCAAGCGGAGAATGGCGTGTATACCTGGGAGGTGCAAAATCCCCTGTATTTCAAGATAACCAACGTGGAGATTTTGCTCCACGCCAACACGACAGTGTACCATGTCCAGATACGATTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCATACTTCAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGACGACTTATTTAAATAGATTTAAATTCTTAGTCAATATGTATTTAGATCAATTAGGCGTAATCTCAATTAATAATGTCATTAGAGCTGTTCAATTCGCAACAGACAAGACGTATGTAACAGATGTACTGGAGGATCATTCAATAAAGTTCAATTTTTATTAA
Protein Sequence MDSRTGERITRRQAENGVYTWEVQNPLYFKITNVEILLHANTTVYHVQIRFNHNLRRALDLHKAYFNFQVWTTSLTASGTTYLNRFKFLVNMYLDQLGVISINNVIRAVQFATDKTYVTDVLEDHSIKFNFY

NCBI Accession YP_010087800.1
Location 1131-1523
Gene Name AC2
Protein Name TRaP
Coding Region ATGCAAAATTCGTCTTCCTCAACTCCCCCCTCTATCAAACCACAACACAGAATAGCCAAGAAGAAGAGGGCCATTCGGAGAAGACGAATTGATTTAGAGTGCGGTTGCTCAATATACCTCCACATCGACTGCCGAGGACATGGATTCACGCACAGGGGAACGCATCACGCGACGTCAAGCGGAGAATGGCGTGTATACCTGGGAGGTGCAAAATCCCCTGTATTTCAAGATAACCAACGTGGAGATTTTGCTCCACGCCAACACGACAGTGTACCATGTCCAGATACGATTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGGCATACTTCAACTTCCAAGTCTGGACGACTTCTCTGACAGCTTCTGGGACGACTTATTTAAATAG
Protein Sequence MQNSSSSTPPSIKPQHRIAKKKRAIRRRRIDLECGCSIYLHIDCRGHGFTHRGTHHATSSGEWRVYLGGAKSPVFQDNQRGDFAPRQHDSVPCPDTIQPQPEESVGSPQGILQLPSLDDFSDSFWDDLFK

NCBI Accession YP_010087801.1
Location 1432-2529
Gene Name AC1
Protein Name REp
Coding Region ATGCCACGACAACCTACTACATTTAGGCTATCTGCTAAGAACATCTTCCTCACTTATCCACAGTGCGACATAGAGAAAGATGAGGTTCTTCGGATGCTTCATTCCCTCAAATGGACGGTCGTCAAACCGACGTACATCAGAGTCGCAAGAGAGGAACACACTGACGGACAACCTCATCTCCACTGCCTCATACAACTATCAGGGAAGTCGAACATCAAGGATGTTAGATTTTTCGACCTTACTCACCCCAGAAGGTCTGCCAATTTTCACCCAAACGTCCAGGCAGCCAAAGACGCCAACGCCGTCAAGAATTACATCACCAAAGAGGGTGATTATTGTGAATCCGGACGATACAAAATATCTGGCGGAACAAAGACCAACAAAGACGACGTCTATCACAACGCTATCAATGCCACTTCTGCATCAGAGGCTCTTGCAATTATCCGGACAGGAGATCCAAAGGCATTCATCGTTCAACATCACAACATCAGTGCTAATATCCACAAGATATTCGCTCAGTCTCCGGAGCCATGGACTCCTCCGTTTCAACTCTCCTCTTTCACTAACGTTCCGGATGAGATGCAAGAGTGGGCGGATGATTATTTTGGTCGTCTTTCCGCTGCGCGGCCACATTTTCATAATAGTCTCAGGCCAGTGTCCATCATCGTGGAGGGTGATTCAAGAACCGGCAAGACGATGTGGGCACGTGCTTTGGGATCTCACAATTATTTGAGTGGACACCTGGATTTCAATTCTAGGGTTTATTCAAATGATGTGGATTATAACGTCATTGATGACGTCGCACCGCACTACCTAAAGATGAAGCACAGGAAAGAATTGATTGGGGCCCAAAGGGACTGGCAATCAAATTGCAAATACGGAAAGCCGGTTCAAATTAAAGGCGGCATACCCTCAATCGTGCTTTGCAATCCAGGCGAGGGGTCCAGTTATAAAGAGTTCCTCGACAAAGAGGAGAATCTGTCACTCAAGAACTGGACTCTCCACAATGCAAAATTCGTCTTCCTCAACTCCCCCCTCTATCAAACCACAACACAGAATAGCCAAGAAGAAGAGGGCCATTCGGAGAAGACGAATTGA
Protein Sequence MPRQPTTFRLSAKNIFLTYPQCDIEKDEVLRMLHSLKWTVVKPTYIRVAREEHTDGQPHLHCLIQLSGKSNIKDVRFFDLTHPRRSANFHPNVQAAKDANAVKNYITKEGDYCESGRYKISGGTKTNKDDVYHNAINATSASEALAIIRTGDPKAFIVQHHNISANIHKIFAQSPEPWTPPFQLSSFTNVPDEMQEWADDYFGRLSAARPHFHNSLRPVSIIVEGDSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVDYNVIDDVAPHYLKMKHRKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGSSYKEFLDKEENLSLKNWTLHNAKFVFLNSPLYQTTTQNSQEEEGHSEKTN