Tomato yellow leaf curl Yunnan virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000909115.1 |
| Isolate |
China |
| Release date |
2015/2/22 |
| Submitter |
Ding,M., Li,W.H., Zhang,Z.K., Zhou,X.P. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTAAAGTGGTCCCCTCCACTAACTCTTGTCGCCCACTAGAAACGCTCCCTCATCGCTTATTTAAATGTTTTTGTCTTATATATATGACTTGCCAAACAAGTGGGTTTCGTAGTGCGATGTGGGATCCACTCTTGAATGAATTCCCAGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTACAATTAGTAGAAAATACATATTCTCCTGATACATTAGGGTACGATTTAATTCGTGATTTAATATTAGTTATTCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAACAGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGTCCTGATGTTCCTCGTGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAACAACGTCACGATGTGGCCCATGTAGGTAAAGTAATTTGTGTGTCGGATGTCACCCGTGGTAATGGGTTGACGCATAGAGTGGGGAAGAGGTTCTGTGTCAAGTCTATTTACGTTTTAGGTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACCAATACAGTCATGTTCTTTTTGGTTCGTGATAGGAGACCATTTGGTACTCCTCAAGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCAAGTACAGCCACTGTGAAGAACGACAACAGAGATCGTTTTCAGGTCCTTCGTCGATTCCAGGCGACGGTGACGGGTGGTCAGTATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTTAATAATCATGTTACTTACAATCATCAAGAGGCTGCGAAGTATGATAACCATACAGAGAATGCTCTTTTATTGTATATGGCATGTACTCATGCTAGTAACCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTATGATTCTGTTCAAAATTAATAAAGTTCGAATTTTATTATATTTGAATGATCTACATAAATTGTTCCGTGCAAAACATCCCATAATACATGATTCACAGATCGAATTACATTATTAATGGATACAATCCCTAAATTATTTAAGTATTGCATACATTGAACCCTAAATACTCTTAAGAAACGCCAAGTCTGAGGTTGTAAGCGAGTCCAGATCTGGAAGATCAGAAAACATTGGTGTAGTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGTATTCGGATCGTGATTATGTCGTGGTTCATTAAGAACGGTCGCTGGTCGTGTTTGATTATTTTGAAATATAGGGGATTTGGAACCATCCAAATATACGCGCCATTCTCTGCTTGAGTTGCAGTGATGAGTTCCCCGGTGCGAGAATCCATGATTGGCGCAGTTTATTGAGTAATAATATGTGCAGCCACGGGGTAGATCAACTCTCCGGCGTCGCACGCTCTTCTTCGCTATTCTGTGTTGGACCTTGATTGGTACTTGAGTACAATGGTTCCGTGAGGGTGATGAATTCTGCATTCTTTAGAGCCCAAGCTTTTAGTGCGGAATTCTTATCCTCGTCCAAGTACTCTTTATATGATGATGTTGGTCCAGGATTGCATAGGAAGATTGTCGGGATACCTCCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTGAAGTGCTTTAGGTAGTGGGGATCTACGTCATCAACCACGTTGTACCACGCATCATTGCTGTATACTTTAGGGCTTAGATCAAGGTGCCCACATAAATAATTATGTGGACCCAGTGACCGTGCCCACATAGTCTTCCCTGTACGACTCTCACCCTCTATGACTATACTTATGGGTCTCCATGGCCGCGCAGCGGCATCCCTTACATTATCGGCAGCCCAGCATTCAAGTTCTTCTGGAACTCGATCGAACGAAGACGATAAAAATGGACAAACAAATTCCTCTAGAGGAGGTGCAAAAATCCTATCTAAATTAGCATTTAAATTATGAAATTGTAAAACGAAATCTTTGGGGGCTAATTCCTTAATTACGATAAGAGCCTCTGACTTACTTCCGCTGTTAAGCGCCTTGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCTTGCATCGATCTGAAACTCTCCCCATTCGATGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGTATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAAATCGAAGAATCTGTTATTTTGGCACTTGTATTTTCCTTCGAATTGGATAAGCACGTGGAGATGAGGAGACCCATCTTCGTGAAGCTCTCTGCAGATTTTTATGTATTTTTTATTTGTAGGGGTTTGTAGGTTTTGTAATTGGGAAAGTGCTTCTTCTTTTGTAAGTGAGCACTGTGGATAAGTGAGGAAATAATTTTTGGCGTATATTTGGAAACGTTTGGGAGGAGTCATTTGACTGGTCAATCGGTACTCAACAAACTCCGCTATGCAATCGGTGATTGGTACTCAATATATAGTTGAGTACCAAATGGCATTATTGTAATTCCCAAAAGAAATTCAAAATTAAATTTTGAAATCCAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_008060398.1
|
|
Location
|
104-487 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGACTTGCCAAACAAGTGGGTTTCGTAGTGCGATGTGGGATCCACTCTTGAATGAATTCCCAGAAACCGTACATGGTTTTAGGTGTATGTTAGCAATTAAGTATTTACAATTAGTAGAAAATACATATTCTCCTGATACATTAGGGTACGATTTAATTCGTGATTTAATATTAGTTATTCGTGCTAGAGATTATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAACAGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGTCCTGA |
|
Protein Sequence
|
MTCQTSGFRSAMWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHTRFQGSSPSELRQPICQPCCCPHCPRHKQKEVMGEQAHVPKAQDVQDVQKS |
|
NCBI Accession
|
YP_008060399.1
|
|
Location
|
297-1070 |
|
Gene Name
|
AV1 |
|
Protein Name
|
CP protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCCGATATAGTCATTTCCACACCCGCTTCCAAGGTTCGTCGCCGTCTGAACTTCGACAGCCCATATGTCAGCCGTGCTGCTGCCCCCACTGTCCTCGTCACAAACAAAAGGAGGTCATGGGTGAACAGGCCCATGTACCGAAAGCCCAAGATGTACAGGATGTACAAAAGTCCTGATGTTCCTCGTGGATGCGAAGGCCCATGTAAGGTCCAGTCTTATGAACAACGTCACGATGTGGCCCATGTAGGTAAAGTAATTTGTGTGTCGGATGTCACCCGTGGTAATGGGTTGACGCATAGAGTGGGGAAGAGGTTCTGTGTCAAGTCTATTTACGTTTTAGGTAAGATCTGGATGGATGAGAACATTAAGACCAAGAATCACACCAATACAGTCATGTTCTTTTTGGTTCGTGATAGGAGACCATTTGGTACTCCTCAAGATTTTGGTCAGGTTTTTAACATGTATGATAACGAGCCAAGTACAGCCACTGTGAAGAACGACAACAGAGATCGTTTTCAGGTCCTTCGTCGATTCCAGGCGACGGTGACGGGTGGTCAGTATGCAAGCAAGGAGCAAGCCATAGTTAGGAAATTCATGAAGGTTAATAATCATGTTACTTACAATCATCAAGAGGCTGCGAAGTATGATAACCATACAGAGAATGCTCTTTTATTGTATATGGCATGTACTCATGCTAGTAACCCAGTGTATGCTACTTTGAAGATCAGGATCTATTTCTATGATTCTGTTCAAAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRAAAPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVAHVGKVICVSDVTRGNGLTHRVGKRFCVKSIYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_008060400.1
|
|
Location
|
1067-1471 |
|
Gene Name
|
AC3 |
|
Protein Name
|
REn protein |
|
Coding Region
|
ATGGATTCTCGCACCGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGCGTATATTTGGATGGTTCCAAATCCCCTATATTTCAAAATAATCAAACACGACCAGCGACCGTTCTTAATGAACCACGACATAATCACGATCCGAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACACCAATGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAGGGTTCAATGTATGCAATACTTAAATAATTTAGGGATTGTATCCATTAATAATGTAATTCGATCTGTGAATCATGTATTATGGGATGTTTTGCACGGAACAATTTATGTAGATCATTCAAATATAATAAAATTCGAACTTTATTAA |
|
Protein Sequence
|
MDSRTGELITATQAENGAYIWMVPNPLYFKIIKHDQRPFLMNHDIITIRIQFNHNLRKALGLHQCFLIFQIWTRLQPQTWRFLRVFRVQCMQYLNNLGIVSINNVIRSVNHVLWDVLHGTIYVDHSNIIKFELY |
|
NCBI Accession
|
YP_008060401.1
|
|
Location
|
1212-1616 |
|
Gene Name
|
AC2 |
|
Protein Name
|
TrAP protein |
|
Coding Region
|
ATGCAGAATTCATCACCCTCACGGAACCATTGTACTCAAGTACCAATCAAGGTCCAACACAGAATAGCGAAGAAGAGCGTGCGACGCCGGAGAGTTGATCTACCCCGTGGCTGCACATATTATTACTCAATAAACTGCGCCAATCATGGATTCTCGCACCGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGCGTATATTTGGATGGTTCCAAATCCCCTATATTTCAAAATAATCAAACACGACCAGCGACCGTTCTTAATGAACCACGACATAATCACGATCCGAATACAGTTCAACCACAACCTGAGGAAAGCGTTGGGACTACACCAATGTTTTCTGATCTTCCAGATCTGGACTCGCTTACAACCTCAGACTTGGCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MQNSSPSRNHCTQVPIKVQHRIAKKSVRRRRVDLPRGCTYYYSINCANHGFSHRGTHHCNSSREWRVYLDGSKSPIFQNNQTRPATVLNEPRHNHDPNTVQPQPEESVGTTPMFSDLPDLDSLTTSDLAFLKSI |
|
NCBI Accession
|
YP_008060402.1
|
|
Location
|
1519-2604 |
|
Gene Name
|
AC1 |
|
Protein Name
|
rep protein |
|
Coding Region
|
ATGACTCCTCCCAAACGTTTCCAAATATACGCCAAAAATTATTTCCTCACTTATCCACAGTGCTCACTTACAAAAGAAGAAGCACTTTCCCAATTACAAAACCTACAAACCCCTACAAATAAAAAATACATAAAAATCTGCAGAGAGCTTCACGAAGATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGCAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCAAGGCGCTTAACAGCGGAAGTAAGTCAGAGGCTCTTATCGTAATTAAGGAATTAGCCCCCAAAGATTTCGTTTTACAATTTCATAATTTAAATGCTAATTTAGATAGGATTTTTGCACCTCCTCTAGAGGAATTTGTTTGTCCATTTTTATCGTCTTCGTTCGATCGAGTTCCAGAAGAACTTGAATGCTGGGCTGCCGATAATGTAAGGGATGCCGCTGCGCGGCCATGGAGACCCATAAGTATAGTCATAGAGGGTGAGAGTCGTACAGGGAAGACTATGTGGGCACGGTCACTGGGTCCACATAATTATTTATGTGGGCACCTTGATCTAAGCCCTAAAGTATACAGCAATGATGCGTGGTACAACGTGGTTGATGACGTAGATCCCCACTACCTAAAGCACTTCAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGAGGTATCCCGACAATCTTCCTATGCAATCCTGGACCAACATCATCATATAAAGAGTACTTGGACGAGGATAAGAATTCCGCACTAAAAGCTTGGGCTCTAAAGAATGCAGAATTCATCACCCTCACGGAACCATTGTACTCAAGTACCAATCAAGGTCCAACACAGAATAGCGAAGAAGAGCGTGCGACGCCGGAGAGTTGA |
|
Protein Sequence
|
MTPPKRFQIYAKNYFLTYPQCSLTKEEALSQLQNLQTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYKCQNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTIEWGEFQIDARSARGGQQSANDAYAKALNSGSKSEALIVIKELAPKDFVLQFHNLNANLDRIFAPPLEEFVCPFLSSSFDRVPEELECWAADNVRDAAARPWRPISIVIEGESRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVVDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLDEDKNSALKAWALKNAEFITLTEPLYSSTNQGPTQNSEEERATPES |
|
NCBI Accession
|
YP_008060403.1
|
|
Location
|
2157-2447 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGTCTCCTCATCTCCACGTGCTTATCCAATTCGAAGGAAAATACAAGTGCCAAAATAACAGATTCTTCGATTTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATACAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGCAAGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCAAGGCGCTTAACAGCGGAAGTAAGTCAGAGGCTCTTATCGTAA |
|
Protein Sequence
|
MGLLISTCLSNSKENTSAKITDSSIWYPQPGQHISIRTYRELNPAPTSSPIWRRTETPSNGESFRSMQDLQEGDNNQPMTLTPRRLTAEVSQRLLS |