Tomato yellow leaf curl virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000858205.1 |
Isolate |
Spain:Almeria |
Release date |
2015/2/13 |
Submitter |
Morilla,G., Janssen,D., Garcia-Andres,S., Moriones,E., Cuadrado,I.M., Bejarano,E.R. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGCCTTTTCCTTTTATGTGGTCCCCACGAGGGTTCCACAGACGTCACTGTCAACCAATCAAATTGCATACTCAAACGTTAAATAAGTGTTCATTTGTCTTTATATACTTGGTCCCCAAGTATTTTGTCTTGCAATATGTGGGACCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAACGGGATGATATTAAGCACACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACCGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGAAAATTTCATGCAACAGTTATTGGTGGGCCCTCTGGAATGAAGGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGTAACTATGAAAATACGCATCTATTTCTATGATTCAATATCAAATTAATAAAATTTATATTTTATATCATGAGTTTCTGTTACATTTATTGTGTTTTCAAGTACATCATACAATACATGATCAACTGCTCTGATTACATTGTTAATGGAAATTACACCAAGACTATCTAAATACTTAAGAACTTCATATCTAAATACTCTTAAGAAATGACCAGTCTGAGGCTGTAATGTCGTCCAAATTCGGAAGTTGAGAAAACATTTGTGAATCCCCATTACCTTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAAATGGCCGCTGGCTGTGTTCTGTTATCTTGAAATAGAGGGGATTGTTTATCTCCCAAATAAAAACGCCATTCTCTGCCTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACAGTCTAGGTCTACACGCTTACGCCTTATTGGTTTCTTCTTGGCTATCTTGTGTTGGACCTTGATTGATACTTGCGAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGCGCCCAATTTTTCAAGGATATATTTTTTTCTTCGTCTAGATATTCCCTATATGAGGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTACTGTACACCTTTGGGCTTAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTTGCCTGTTCTGCTATCACCCTCAATGACAATACTATTAGGTCTCCATGGCCGCGCAGCGGAAGACACGACGTTCTCAGCGACCCACTCTTCAAGTTCATCTGGAACTTGATTAAAAGAAGAAGAAAGAAATGGAGAAACATAAACTTCTAAAGGAGGACTAAAAATCCTATCTAAATTTGAACTTAAATTATGAAATTGTAAAATATAGTCCTTTGGGGCCTTCTCTTTTAATATATTGAGGGCCTCGGATTTATTGCCTGAATTGAGTGCTTCGGCATATGCGTCGTTGGCAGATTGCTGACCTCCTCTAGCTGATCTGCCATCGATTTGGAAAACTCCAAAATCAATGAAGTCTCCGTCTTTCTCCACGTAGGTCTTGACATCTGTTGAGCTCTTAGCTGCCTGAATGTTCGGATGGAAATGTGCTGATCTGTTTGGGGATACCAGGTCGAAGAACCGTTGGTTCTTACATTGGTATTTGCCTTCGAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAATTGGGAAAGTGCTTCCTCTTTAGAGAGAGAACAATTGGGATATGTTAGGAAATAATTTTTGGCATATATTTTAAATAAACGAGGCATGTTGAAATGAATCGGTGTCCCTCAAAGCTCTATGGCAATCGGTGTATCGGTGTCTTATTTATACCTGGACACCTAATGGCTATTTGGTAATTTCGTAAAAGTACATTGCAATTCAAAATTCAAAATTCAAAAATCAAATCATTAAAGCGGCCATCCGTA
Gene Information
NCBI Accession
|
NP_658991.1
|
Location
|
155-505 |
Gene Name
|
v2 |
Protein Name
|
precoat protein |
Coding Region
|
ATGTGGGACCCACTTCTAAATGAATTTCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTATTAAATATTTGCAGTCCGTTGAGGAAACTTACGAGCCCAATACATTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPESVHGFRCMLAIKYLQSVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHARLEGSPKAELRQPIQQPCCCPHCPRHKQATIMDVQAHVPKAQNIQNVSKP |
NCBI Accession
|
NP_658992.1
|
Location
|
315-1091 |
Gene Name
|
cp |
Protein Name
|
coat protein |
Coding Region
|
ATGTCGAAGCGACCAGGCGATATAATCATTTCCACGCCCGTCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGTCCCCATTGTCCAAGGCACAAACAAGCGACGATCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAAGTCCAGTCTTATGAGCAACGGGATGATATTAAGCACACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGATCTGGAATTACTCACAGAGTGGGTAAGAGGTTCTGTGTTAAATCGATATATTTTTTAGGTAAAGTCTGGATGGATGAAAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTCTTTTTGGTCCGTGATAGAAGGCCCTATGGAAGCAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCCAGTACCGCAACCGTGAAGAATGATTTGCGTGATAGGTTTCAAGTGATGAGAAAATTTCATGCAACAGTTATTGGTGGGCCCTCTGGAATGAAGGAACAGGCATTAGTTAAGAGATTTTTTAAAATTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTACGAGAACCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACGCATGCCTCTAATCCAGTGTATGTAACTATGAAAATACGCATCTATTTCTATGATTCAATATCAAATTAA |
Protein Sequence
|
MSKRPGDIIISTPVSKVRRRLNFDSPYSSRAAVPIVQGTNKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFKINSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYVTMKIRIYFYDSISN |
NCBI Accession
|
NP_658993.1
|
Location
|
1088-1492 |
Gene Name
|
c3 |
Protein Name
|
C3 protein |
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCAGAGAATGGCGTTTTTATTTGGGAGATAAACAATCCCCTCTATTTCAAGATAACAGAACACAGCCAGCGGCCATTTCTAATGAACCACGACATCATTTCCATTCAGATAAGATTCAACCACAACATCAGGAAGGTAATGGGGATTCACAAATGTTTTCTCAACTTCCGAATTTGGACGACATTACAGCCTCAGACTGGTCATTTCTTAAGAGTATTTAGATATGAAGTTCTTAAGTATTTAGATAGTCTTGGTGTAATTTCCATTAACAATGTAATCAGAGCAGTTGATCATGTATTGTATGATGTACTTGAAAACACAATAAATGTAACAGAAACTCATGATATAAAATATAAATTTTATTAA |
Protein Sequence
|
MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDIISIQIRFNHNIRKVMGIHKCFLNFRIWTTLQPQTGHFLRVFRYEVLKYLDSLGVISINNVIRAVDHVLYDVLENTINVTETHDIKYKFY |
NCBI Accession
|
NP_658994.1
|
Location
|
1233-1640 |
Gene Name
|
c2 |
Protein Name
|
C2 protein |
Coding Region
|
ATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCGCAAGTATCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATAAGGCGTAAGCGTGTAGACCTAGACTGTGGCTGCTCATACTACCTCCACCTCAACTGCAACAATCATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCAGAGAATGGCGTTTTTATTTGGGAGATAAACAATCCCCTCTATTTCAAGATAACAGAACACAGCCAGCGGCCATTTCTAATGAACCACGACATCATTTCCATTCAGATAAGATTCAACCACAACATCAGGAAGGTAATGGGGATTCACAAATGTTTTCTCAACTTCCGAATTTGGACGACATTACAGCCTCAGACTGGTCATTTCTTAAGAGTATTTAG |
Protein Sequence
|
MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRVDLDCGCSYYLHLNCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPAAISNEPRHHFHSDKIQPQHQEGNGDSQMFSQLPNLDDITASDWSFLKSI |
NCBI Accession
|
NP_658995.1
|
Location
|
1549-2622 |
Gene Name
|
rep |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGCCTCGTTTATTTAAAATATATGCCAAAAATTATTTCCTAACATATCCCAATTGTTCTCTCTCTAAAGAGGAAGCACTTTCCCAATTAAAAAACCTAGAAACCCCAACAAATAAAAAATACATCAAAGTTTGCAGAGAACTCCACGAGAATGGGGAACCACATCTCCATGTGCTTATCCAATTCGAAGGCAAATACCAATGTAAGAACCAACGGTTCTTCGACCTGGTATCCCCAAACAGATCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCAACAGATGTCAAGACCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAAGCACTCAATTCAGGCAATAAATCCGAGGCCCTCAATATATTAAAAGAGAAGGCCCCAAAGGACTATATTTTACAATTTCATAATTTAAGTTCAAATTTAGATAGGATTTTTAGTCCTCCTTTAGAAGTTTATGTTTCTCCATTTCTTTCTTCTTCTTTTAATCAAGTTCCAGATGAACTTGAAGAGTGGGTCGCTGAGAACGTCGTGTCTTCCGCTGCGCGGCCATGGAGACCTAATAGTATTGTCATTGAGGGTGATAGCAGAACAGGCAAAACAATGTGGGCCAGGTCTCTAGGCCCACATAATTATTTATGTGGACATCTAGACCTAAGCCCAAAGGTGTACAGTAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACCTCCTCATATAGGGAATATCTAGACGAAGAAAAAAATATATCCTTGAAAAATTGGGCGCTCAAGAATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCGCAAGTATCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATAAGGCGTAA |
Protein Sequence
|
MPRLFKIYAKNYFLTYPNCSLSKEEALSQLKNLETPTNKKYIKVCRELHENGEPHLHVLIQFEGKYQCKNQRFFDLVSPNRSAHFHPNIQAAKSSTDVKTYVEKDGDFIDFGVFQIDGRSARGGQQSANDAYAEALNSGNKSEALNILKEKAPKDYILQFHNLSSNLDRIFSPPLEVYVSPFLSSSFNQVPDELEEWVAENVVSSAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFASINQGPTQDSQEETNKA |
NCBI Accession
|
NP_658996.1
|
Location
|
2178-2471 |
Gene Name
|
c4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGGAACCACATCTCCATGTGCTTATCCAATTCGAAGGCAAATACCAATGTAAGAACCAACGGTTCTTCGACCTGGTATCCCCAAACAGATCAGCACATTTCCATCCGAACATTCAGGCAGCTAAGAGCTCAACAGATGTCAAGACCTACGTGGAGAAAGACGGAGACTTCATTGATTTTGGAGTTTTCCAAATCGATGGCAGATCAGCTAGAGGAGGTCAGCAATCTGCCAACGACGCATATGCCGAAGCACTCAATTCAGGCAATAAATCCGAGGCCCTCAATATATTAA |
Protein Sequence
|
MGNHISMCLSNSKANTNVRTNGSSTWYPQTDQHISIRTFRQLRAQQMSRPTWRKTETSLILEFSKSMADQLEEVSNLPTTHMPKHSIQAINPRPSIY |