Tomato yellow leaf curl Shuangbai virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_001634615.1
Isolate China
Release date 2016/5/1
Submitter Zhao,L.L., Ding,M., Yin,Y.Y., Zhang,X.Y., Zhang,Z.K.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_029995
ACCGGATGGCCGCGATTTTTTTTAAAGTGGGCCCCTTGATGTGATATGTCATTCAATCAGAACGCTCCCCCAAAGCTTAATTGTTTTGTGGTCCCTTATTTAAACTTGCTCACCAAGTAGTGCACTCCGCACTATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACTGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGTCACGATTTAATTAGGGATTTAATTTCCGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGATATTCAGCATATAGGTAAAGTCATGTGTGTTAGTGATGTTACGCGTGGAACTGGGCTGACCCACCGAGTGGGTAAAAGGTTTTGTGTGAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGACGAGAATATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTGGATAAACCTCAAGATTTTGGGGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTCTATGATTCTGTAACAAATTAATAAAGATTGAATTTTATTATATGAGAATGTGTTACATATTCTGTGTTTTGCAATACATCCCATAATACATGATTACACGCTCTAATTACATTGTTAATACTAATTACACCCAAATTATCTAAATATTTCATACATTGAACCCTAAATACTCTTAAGAAATGCCAAGTCTGAGGACGTAAACGAGTCCAGATCTGGAAGATTAGAAAACACTGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAATTGTATTTGGATCGTTATGATGTCGTGGTTGGTGTTGAATGGTCTCTCGTGGTGCTTGGTTATCTTGAAATATAGGGGATTTTTGATCGTCCAGGTATACACGCCACTCTCGCATTGAGTTGCAGTGAGTAATTCCCCTGTGCGAAAATCCATGATTTGCACAATCTATGCCGAAGTAGTACGAACACCCGCACGTTAGATCAACTCTCCGCCTGCGAACTGGCCTCCTCTTGGCTATTCTGTGTTGCACTTTGATTGGTACCTGAGTACAATGGGTTGTTGATGGTGATGAATTCTGCATTCTTTATAGCCCAATCTTTTAATGCTGAATTTTTATCTTCATTCAAGTACTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATAGTTGGGATTCCACCTTTAATTTGAATTGGTTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAGTGGGGATCGACGTCATCAATGACGTTATACCAAGCATCATTACTGTATACTTTTGGGCTTAGATCAAGATGTCCACACAAATAATTGTGAGGTCCCAGTGATCTGGCCCACATTGTTTTACCCGTACGACTATCACCTTCAATTACTATACTTTTGGGTCTCCATGGCCGCGCAGCGGCACTGACGACATTCTCGGCAGCCCATTTCTCAAGTTCTTCTGGAACTTGATCGAAAGAAGAAGATAAAAAAGGACAAACAAAAACCTCTATAGGAGGGGCAAAAATCCTATCTAAATTAGAATTTAAATTATGATATTGTAAAACATAATCCTTAGGGGCTAATTCCTTAAGTACGTTGAGAGCCTCCGATTTACTTCCGCTGTTAAGTGCCTTGGCGTAAGCGTCGTTGGCTGATTGTTGACCCCCTCTTGCCGATCTTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTATCCAGATAGGACTTGACGTCGGAGCTGGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCGTGCATCTGTACTTACCTTCGAACTGGATAAGCACGTGGAGATGAGGGCTCCCATCTTCGTGAAGCTCTCTGCAGATTTTAATATATTTTTTATTTGTAGGTGTAACTAGGTTTTGTAATTGGGAAAGTGCTTCCTCTTTAGTAAGAGAACATTGTGGATAAGTAAGGAAATAGTGTTTTGCATTTAATTGGAAACGCTTAGGAGGAGCCATTGACTTGGTCAATTGGTACCAATTGGGGTTCTGGCACTTACTCCCCGTATATGGGTAGCAATATATAGTCTGGTACCAAATGGCATAACTGTAATTCCTAAAGAAATTCAAAATTCAAATCCTAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009249833.1
Location 134-490
Protein Name AV2 protein
Coding Region ATGTGGGATCCATTAGTGAACGAGTTTCCCGAAACTGTTCACGGTTTTAGATGTATGTTAGCAGTTAAATATCTGCAGTTAGTAGAGAAGACTTATTCGCCTGACACATTAGGTCACGATTTAATTAGGGATTTAATTTCCGTTATTAGGGCTAGAAATTATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAG
Protein Sequence MWDPLVNEFPETVHGFRCMLAVKYLQLVEKTYSPDTLGHDLIRDLISVIRARNYVEATSRYNHFHARFEGTPPSQLRQPICEPCCCPHCPRHQSKSMGEQAHEQKAQDVQDVQKSRCP

NCBI Accession YP_009249834.1
Location 294-1064
Protein Name coat protein
Coding Region ATGTCGAAGCGACCAGCAGATATAATCATTTCCACGCCCGCTTCGAAGGTACGCCGCCGTCTCAACTTCGACAGCCCATATGTGAGCCGTGCTGCTGCCCCCATTGTCCGCGTCACCAAAGCAAGAGCATGGGCGAACAGGCCCATGAACAGAAAGCCCAGGATGTACAGGATGTACAGAAGTCCAGATGTCCCTAGAGGATGTGAAGGCCCATGTAAGGTCCAGTCTTTTGAGTCTAGACATGATATTCAGCATATAGGTAAAGTCATGTGTGTTAGTGATGTTACGCGTGGAACTGGGCTGACCCACCGAGTGGGTAAAAGGTTTTGTGTGAAATCCGTTTATGTCTTGGGTAAGATCTGGATGGACGAGAATATTAAGACCAAAAATCACACGAATAGTGTGATGTTTTTTTTAGTTAGGGATCGTAGACCTGTGGATAAACCTCAAGATTTTGGGGAGGTTTTTAACATGTTTGATAATGAGCCCAGTACGGCTACTGTGAAGAATGTTCATCGTGATAGGTATCAAGTTCTTCGGAAATGGCATGCAACTGTGACTGGTGGACAATATGCGTCAAAGGAACAAGCTCTCGTGAAGAAATTTGTTAGGGTTAATAATTATGTTGTGTATAACCAGCAAGAAGCTGGCAAGTATGAGAATCATTCTGAGAATGCGTTAATGTTGTATATGGCATGTACTCATGCCTCTAACCCAGTGTATGCTACTTTGAAGATCAGAATCTATTTCTATGATTCTGTAACAAATTAA
Protein Sequence MSKRPADIIISTPASKVRRRLNFDSPYVSRAAAPIVRVTKARAWANRPMNRKPRMYRMYRSPDVPRGCEGPCKVQSFESRHDIQHIGKVMCVSDVTRGTGLTHRVGKRFCVKSVYVLGKIWMDENIKTKNHTNSVMFFLVRDRRPVDKPQDFGEVFNMFDNEPSTATVKNVHRDRYQVLRKWHATVTGGQYASKEQALVKKFVRVNNYVVYNQQEAGKYENHSENALMLYMACTHASNPVYATLKIRIYFYDSVTN

NCBI Accession YP_009249835.1
Location 1061-1465
Protein Name AC3 protein
Coding Region ATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAACCACGACATCATAACGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGTTTACGTCCTCAGACTTGGCATTTCTTAAGAGTATTTAGGGTTCAATGTATGAAATATTTAGATAATTTGGGTGTAATTAGTATTAACAATGTAATTAGAGCGTGTAATCATGTATTATGGGATGTATTGCAAAACACAGAATATGTAACACATTCTCATATAATAAAATTCAATCTTTATTAA
Protein Sequence MDFRTGELLTATQCESGVYTWTIKNPLYFKITKHHERPFNTNHDIITIQIQFNHNLRKALGIHQCFLIFQIWTRLRPQTWHFLRVFRVQCMKYLDNLGVISINNVIRACNHVLWDVLQNTEYVTHSHIIKFNLY

NCBI Accession YP_009249836.1
Location 1206-1613
Protein Name AC2 protein
Coding Region ATGCAGAATTCATCACCATCAACAACCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGGAGAGTTGATCTAACGTGCGGGTGTTCGTACTACTTCGGCATAGATTGTGCAAATCATGGATTTTCGCACAGGGGAATTACTCACTGCAACTCAATGCGAGAGTGGCGTGTATACCTGGACGATCAAAAATCCCCTATATTTCAAGATAACCAAGCACCACGAGAGACCATTCAACACCAACCACGACATCATAACGATCCAAATACAATTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCAGTGTTTTCTAATCTTCCAGATCTGGACTCGTTTACGTCCTCAGACTTGGCATTTCTTAAGAGTATTTAG
Protein Sequence MQNSSPSTTHCTQVPIKVQHRIAKRRPVRRRRVDLTCGCSYYFGIDCANHGFSHRGITHCNSMREWRVYLDDQKSPIFQDNQAPRETIQHQPRHHNDPNTIQPQPEESVGNTPVFSNLPDLDSFTSSDLAFLKSI

NCBI Accession YP_009249837.1
Location 1513-2601
Protein Name rep protein
Coding Region ATGGCTCCTCCTAAGCGTTTCCAATTAAATGCAAAACACTATTTCCTTACTTATCCACAATGTTCTCTTACTAAAGAGGAAGCACTTTCCCAATTACAAAACCTAGTTACACCTACAAATAAAAAATATATTAAAATCTGCAGAGAGCTTCACGAAGATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGTAAGTACAGATGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCGGCAAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCCAAGGCACTTAACAGCGGAAGTAAATCGGAGGCTCTCAACGTACTTAAGGAATTAGCCCCTAAGGATTATGTTTTACAATATCATAATTTAAATTCTAATTTAGATAGGATTTTTGCCCCTCCTATAGAGGTTTTTGTTTGTCCTTTTTTATCTTCTTCTTTCGATCAAGTTCCAGAAGAACTTGAGAAATGGGCTGCCGAGAATGTCGTCAGTGCCGCTGCGCGGCCATGGAGACCCAAAAGTATAGTAATTGAAGGTGATAGTCGTACGGGTAAAACAATGTGGGCCAGATCACTGGGACCTCACAATTATTTGTGTGGACATCTTGATCTAAGCCCAAAAGTATACAGTAATGATGCTTGGTATAACGTCATTGATGACGTCGATCCCCACTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTACGGGAAACCAATTCAAATTAAAGGTGGAATCCCAACTATCTTCCTTTGCAATCCAGGACCAACATCATCATATAAAGAGTACTTGAATGAAGATAAAAATTCAGCATTAAAAGATTGGGCTATAAAGAATGCAGAATTCATCACCATCAACAACCCATTGTACTCAGGTACCAATCAAAGTGCAACACAGAATAGCCAAGAGGAGGCCAGTTCGCAGGCGGAGAGTTGA
Protein Sequence MAPPKRFQLNAKHYFLTYPQCSLTKEEALSQLQNLVTPTNKKYIKICRELHEDGSPHLHVLIQFEGKYRCTNNRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLDKDGDTLEWGEFQIDGRSARGGQQSANDAYAKALNSGSKSEALNVLKELAPKDYVLQYHNLNSNLDRIFAPPIEVFVCPFLSSSFDQVPEELEKWAAENVVSAAARPWRPKSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYKEYLNEDKNSALKDWAIKNAEFITINNPLYSGTNQSATQNSQEEASSQAES

NCBI Accession YP_009249838.1
Location 2142-2444
Protein Name AC4 protein
Coding Region ATGGGAGCCCTCATCTCCACGTGCTTATCCAGTTCGAAGGTAAGTACAGATGCACGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCCAGCTCCGACGTCAAGTCCTATCTGGATAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGAAGATCGGCAAGAGGGGGTCAACAATCAGCCAACGACGCTTACGCCAAGGCACTTAACAGCGGAAGTAAATCGGAGGCTCTCAACGTACTTAAGGAATTAG
Protein Sequence MGALISTCLSSSKVSTDARITDSSTWYPQPGQHISIRTFRELNPAPTSSPIWIRTETPSNGESFRSMEDRQEGVNNQPTTLTPRHLTAEVNRRLSTYLRN