Tomato yellow leaf curl Mali virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_001028945.1
Isolate Burkina Faso
Release date 2015/6/17
Submitter Sattar,M.N., Koutou,M., Husseini,S., Leke,W.N., Brown,J.K., Kvarnheden,A.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_027215
ACCGGATGGCCGCGCCCTTCCTTTTGTGGTCCCCATTCGGGTCCTATAGACGTCACTATCAACCAATCAAATTGCATCCTCAAACGTTAGATAAGTGTTTATTTGTCTTTATATACTTGTTCTCCAAGTTTTTTGTCATATAATATGTGGGATCCACTCTTAAATGAATTCCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTGTTAAATATTTGCAGGCCGTTGAGGAAACATATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTTGAAGCGACCCGGCGATATAATCATTTCCACACCCGCCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCATAAACAAGCGACGGTCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCTTATGAGCAACGGGATGACATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGTTCTGGTATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAGTCCATTTATTTTTTAGGTAAGGTCTGGATGGATGAAAATATCAAGAAGCAGAACCATACTAATCAAGTCATGTTCTTCTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCGAGTACCGCAACAGTGAAGAATGATCTCCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACCGTTATTGGTGGGCCTTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTCTTTAGAGTTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTATGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTACTTCTATGATTCAATATCAAATTAATAAAAATTAAATTTTATATCATGGGTTTCTGTTACATCTATTGTCTTTTCAAGTACATCATACAATACATGGTCAACTGCTCTAATTACATTGTTAATGGAAATTACACCTAAACTATCTAAATACTTAAGAACTTGATATCTTCTAAATACTTTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGATTCGGAAGTTGAGAAAACATTTGTGAATCCCCAGTACCTTCCTGATGTTGTGATTGAAGCGGATCTGCATTGAAATGATGTCGTGATCCATGTTGAATGGTTTCTGGCTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAAAACGCCATTCTCTGCTTGAGGAGCAGTGATGAGTTCCCCTGTGCGCAAATCCATGGTTGATGCAGTTGATGTGAAGATAGTATGAGCAGCCACAGTCTAGGTCTACACGCTTACGCCTGATTGGTTTCTTCTTGGCTATCTTGTGTTGGACCTTGATTGGTACTTGAGAACAGTGGCTTATAGAGGGTGATGAAGGTTGCATTCTTGAGAGCCCAATTTTTCAATGACAGGTTTTTTTCTTCATCTAGATATTCTCTATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTTGAAAATATCTTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCACATTGTTTTTCCGGTACGACTATCACCTTCGATTACAATACTATCAGGTCTCCATGGCCGCGCAGCGGAAGACATGACGTTCTCGGACACCCATACCTCAAGTTCCTCTGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAATATAAGGACCTGGAGGCTCCTGAAAAATTCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACGTAATCTTTGGGGGCTAGTTCCCTAATGACTCTAAGAGCTTCCGACTTACTTCTTGAGTTAAGAGCTGCTGCGTAAGCATCGTTTGCAGATTGTTGTCCCCCCCTTGCAGACCTTCCATCGATCTGAAACTCTCCCCAATCGATGGTGTCTCCATCCTTATCGATGTAGGACTTGACATCAGATGATGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACTTGGGGATACCAGGTCGAAGAATCTGTTATTTGTGCACTGGTACTTTCCTTCGAACTGAACAAGGGCATGCAGATGAGGTTCCCCATTTTCGTGAAGCTCTCTGCAAATTTTAATGTATAATTTATTTACAGGAGTTTCTAGGGTTTGTAGTTGGGAAAGGGCTTCAGTTAATGAAAGAGAACACTGGGGATAAGTAAGGAAATAATTTTTGGCATTTATTTTAAAACGCTTTGGGGGAGCCATTTGGTCAATGTACCCCGATTGACTTGGATTTCATTTGGCACCTGCAATCGGTGTAATGGGGTACAATTTATACTTGTACCCCAAATGGCAATGTTGTAATTTTGCAAAAGTAAATTGCAATTAAAAATTCAAAATTCAAAAATCAAATCATTAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009143522.1
Location 145-495
Gene Name V2
Protein Name pre coat protein
Coding Region ATGTGGGATCCACTCTTAAATGAATTCCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTGTTAAATATTTGCAGGCCGTTGAGGAAACATATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTTGAAGCGACCCGGCGATATAATCATTTCCACACCCGCCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCATAAACAAGCGACGGTCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA
Protein Sequence MWDPLLNEFPESVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHTRLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDVQAHVPKAQNIQNVSKP

NCBI Accession YP_009143523.1
Location 305-1081
Gene Name CP
Protein Name Coat Protein
Coding Region ATGTTGAAGCGACCCGGCGATATAATCATTTCCACACCCGCCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCATAAACAAGCGACGGTCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCTTATGAGCAACGGGATGACATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGTTCTGGTATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAGTCCATTTATTTTTTAGGTAAGGTCTGGATGGATGAAAATATCAAGAAGCAGAACCATACTAATCAAGTCATGTTCTTCTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCGAGTACCGCAACAGTGAAGAATGATCTCCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACCGTTATTGGTGGGCCTTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTCTTTAGAGTTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTATGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTACTTCTATGATTCAATATCAAATTAA
Protein Sequence MLKRPGDIIISTPASKVRRRLNFDSPYSSRAAAPIVQGINKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRVNSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSISN

NCBI Accession YP_009143524.1
Location 1078-1485
Gene Name REn
Protein Name replication enhancer protein
Coding Region ATGGATTTGCGCACAGGGGAACTCATCACTGCTCCTCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAGCCAGAAACCATTCAACATGGATCACGACATCATTTCAATGCAGATCCGCTTCAATCACAACATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAAAGTATTTAGAAGATATCAAGTTCTTAAGTATTTAGATAGTTTAGGTGTAATTTCCATTAACAATGTAATTAGAGCAGTTGACCATGTATTGTATGATGTACTTGAAAAGACAATAGATGTAACAGAAACCCATGATATAAAATTTAATTTTTATTAA
Protein Sequence MDLRTGELITAPQAENGVFIWEINNPLYFKITEHSQKPFNMDHDIISMQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLKVFRRYQVLKYLDSLGVISINNVIRAVDHVLYDVLEKTIDVTETHDIKFNFY

NCBI Accession YP_009143525.1
Location 1226-1633
Gene Name TrAp
Protein Name transcriptional activator protein
Coding Region ATGCAACCTTCATCACCCTCTATAAGCCACTGTTCTCAAGTACCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATCAGGCGTAAGCGTGTAGACCTAGACTGTGGCTGCTCATACTATCTTCACATCAACTGCATCAACCATGGATTTGCGCACAGGGGAACTCATCACTGCTCCTCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAGCCAGAAACCATTCAACATGGATCACGACATCATTTCAATGCAGATCCGCTTCAATCACAACATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAAAGTATTTAG
Protein Sequence MQPSSPSISHCSQVPIKVQHKIAKKKPIRRKRVDLDCGCSYYLHINCINHGFAHRGTHHCSSSREWRFYLGDKQSPIFQDNRTQPETIQHGSRHHFNADPLQSQHQEGTGDSQMFSQLPNLDDLTASDWSFLKSI

NCBI Accession YP_009143526.1
Location 1542-2621
Gene Name Rep
Protein Name Replication Associate Protein
Coding Region ATGGCTCCCCCAAAGCGTTTTAAAATAAATGCCAAAAATTATTTCCTTACTTATCCCCAGTGTTCTCTTTCATTAACTGAAGCCCTTTCCCAACTACAAACCCTAGAAACTCCTGTAAATAAATTATACATTAAAATTTGCAGAGAGCTTCACGAAAATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGAAAGTACCAGTGCACAAATAACAGATTCTTCGACCTGGTATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCATCATCTGATGTCAAGTCCTACATCGATAAGGATGGAGACACCATCGATTGGGGAGAGTTTCAGATCGATGGAAGGTCTGCAAGGGGGGGACAACAATCTGCAAACGATGCTTACGCAGCAGCTCTTAACTCAAGAAGTAAGTCGGAAGCTCTTAGAGTCATTAGGGAACTAGCCCCCAAAGATTACGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGAATTTTTCAGGAGCCTCCAGGTCCTTATATTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCAGAGGAACTTGAGGTATGGGTGTCCGAGAACGTCATGTCTTCCGCTGCGCGGCCATGGAGACCTGATAGTATTGTAATCGAAGGTGATAGTCGTACCGGAAAAACAATGTGGGCACGATCGTTAGGTCCACACAATTATTTGTGTGGACATCTCGATCTCAGCCCTAAGATATTTTCAAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAGAGCAACACAAAATACGGGAAACCCATTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACTTCATCGTATAGAGAATATCTAGATGAAGAAAAAAACCTGTCATTGAAAAATTGGGCTCTCAAGAATGCAACCTTCATCACCCTCTATAAGCCACTGTTCTCAAGTACCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATCAGGCGTAA
Protein Sequence MAPPKRFKINAKNYFLTYPQCSLSLTEALSQLQTLETPVNKLYIKICRELHENGEPHLHALVQFEGKYQCTNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYIDKDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNSRSKSEALRVIRELAPKDYVLQFHNLNSNLDRIFQEPPGPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPDSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIFSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNLSLKNWALKNATFITLYKPLFSSTNQGPTQDSQEETNQA

NCBI Accession YP_009143527.1
Location 2162-2464
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGAAAGTACCAGTGCACAAATAACAGATTCTTCGACCTGGTATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCATCATCTGATGTCAAGTCCTACATCGATAAGGATGGAGACACCATCGATTGGGGAGAGTTTCAGATCGATGGAAGGTCTGCAAGGGGGGGACAACAATCTGCAAACGATGCTTACGCAGCAGCTCTTAACTCAAGAAGTAAGTCGGAAGCTCTTAGAGTCATTAGGGAACTAG
Protein Sequence MGNLICMPLFSSKESTSAQITDSSTWYPQVDQHISIQTFRELNHHLMSSPTSIRMETPSIGESFRSMEGLQGGDNNLQTMLTQQLLTQEVSRKLLESLGN