Tomato yellow leaf curl Mali virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_001028945.1 |
Isolate |
Burkina Faso |
Release date |
2015/6/17 |
Submitter |
Sattar,M.N., Koutou,M., Husseini,S., Leke,W.N., Brown,J.K., Kvarnheden,A. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCCCTTCCTTTTGTGGTCCCCATTCGGGTCCTATAGACGTCACTATCAACCAATCAAATTGCATCCTCAAACGTTAGATAAGTGTTTATTTGTCTTTATATACTTGTTCTCCAAGTTTTTTGTCATATAATATGTGGGATCCACTCTTAAATGAATTCCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTGTTAAATATTTGCAGGCCGTTGAGGAAACATATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTTGAAGCGACCCGGCGATATAATCATTTCCACACCCGCCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCATAAACAAGCGACGGTCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCTTATGAGCAACGGGATGACATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGTTCTGGTATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAGTCCATTTATTTTTTAGGTAAGGTCTGGATGGATGAAAATATCAAGAAGCAGAACCATACTAATCAAGTCATGTTCTTCTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCGAGTACCGCAACAGTGAAGAATGATCTCCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACCGTTATTGGTGGGCCTTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTCTTTAGAGTTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTATGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTACTTCTATGATTCAATATCAAATTAATAAAAATTAAATTTTATATCATGGGTTTCTGTTACATCTATTGTCTTTTCAAGTACATCATACAATACATGGTCAACTGCTCTAATTACATTGTTAATGGAAATTACACCTAAACTATCTAAATACTTAAGAACTTGATATCTTCTAAATACTTTTAAGAAACGACCAGTCTGAGGCCGTAAGGTCGTCCAGATTCGGAAGTTGAGAAAACATTTGTGAATCCCCAGTACCTTCCTGATGTTGTGATTGAAGCGGATCTGCATTGAAATGATGTCGTGATCCATGTTGAATGGTTTCTGGCTGTGTTCTGTTATCTTGAAATATAGGGGATTGTTTATCTCCCAGATAAAAACGCCATTCTCTGCTTGAGGAGCAGTGATGAGTTCCCCTGTGCGCAAATCCATGGTTGATGCAGTTGATGTGAAGATAGTATGAGCAGCCACAGTCTAGGTCTACACGCTTACGCCTGATTGGTTTCTTCTTGGCTATCTTGTGTTGGACCTTGATTGGTACTTGAGAACAGTGGCTTATAGAGGGTGATGAAGGTTGCATTCTTGAGAGCCCAATTTTTCAATGACAGGTTTTTTTCTTCATCTAGATATTCTCTATACGATGAAGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCACCTTTAATTTGAATGGGTTTCCCGTATTTTGTGTTGCTCTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCACGCATCATTTGAAAATATCTTAGGGCTGAGATCGAGATGTCCACACAAATAATTGTGTGGACCTAACGATCGTGCCCACATTGTTTTTCCGGTACGACTATCACCTTCGATTACAATACTATCAGGTCTCCATGGCCGCGCAGCGGAAGACATGACGTTCTCGGACACCCATACCTCAAGTTCCTCTGGAACTTGATTAAAAGAAGAAGATAAAAAAGGAGAAATATAAGGACCTGGAGGCTCCTGAAAAATTCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACGTAATCTTTGGGGGCTAGTTCCCTAATGACTCTAAGAGCTTCCGACTTACTTCTTGAGTTAAGAGCTGCTGCGTAAGCATCGTTTGCAGATTGTTGTCCCCCCCTTGCAGACCTTCCATCGATCTGAAACTCTCCCCAATCGATGGTGTCTCCATCCTTATCGATGTAGGACTTGACATCAGATGATGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGTTGATCTACTTGGGGATACCAGGTCGAAGAATCTGTTATTTGTGCACTGGTACTTTCCTTCGAACTGAACAAGGGCATGCAGATGAGGTTCCCCATTTTCGTGAAGCTCTCTGCAAATTTTAATGTATAATTTATTTACAGGAGTTTCTAGGGTTTGTAGTTGGGAAAGGGCTTCAGTTAATGAAAGAGAACACTGGGGATAAGTAAGGAAATAATTTTTGGCATTTATTTTAAAACGCTTTGGGGGAGCCATTTGGTCAATGTACCCCGATTGACTTGGATTTCATTTGGCACCTGCAATCGGTGTAATGGGGTACAATTTATACTTGTACCCCAAATGGCAATGTTGTAATTTTGCAAAAGTAAATTGCAATTAAAAATTCAAAATTCAAAAATCAAATCATTAAAGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_009143522.1
|
Location
|
145-495 |
Gene Name
|
V2 |
Protein Name
|
pre coat protein |
Coding Region
|
ATGTGGGATCCACTCTTAAATGAATTCCCTGAATCTGTTCACGGATTTCGTTGTATGTTAGCTGTTAAATATTTGCAGGCCGTTGAGGAAACATATGAGCCCAATACTTTGGGCCACGATTTAATTAGGGATCTTATATCTGTTGTAAGGGCCCGTGACTATGTTGAAGCGACCCGGCGATATAATCATTTCCACACCCGCCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCATAAACAAGCGACGGTCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGA |
Protein Sequence
|
MWDPLLNEFPESVHGFRCMLAVKYLQAVEETYEPNTLGHDLIRDLISVVRARDYVEATRRYNHFHTRLEGSPKAELRQPIQQPCCCPHCPRHKQATVMDVQAHVPKAQNIQNVSKP |
NCBI Accession
|
YP_009143523.1
|
Location
|
305-1081 |
Gene Name
|
CP |
Protein Name
|
Coat Protein |
Coding Region
|
ATGTTGAAGCGACCCGGCGATATAATCATTTCCACACCCGCCTCGAAGGTTCGCCGAAGGCTGAACTTCGACAGCCCATACAGCAGCCGTGCTGCTGCCCCCATTGTCCAAGGCATAAACAAGCGACGGTCATGGACGTACAGGCCCATGTACCGAAAGCCCAGAATATACAGAATGTATCGAAGCCCTGATGTTCCCCGTGGATGTGAAGGCCCATGTAAGGTCCAATCTTATGAGCAACGGGATGACATTAAGCATACTGGTATTGTTCGTTGTGTTAGTGATGTTACTCGTGGTTCTGGTATTACCCACAGAGTGGGTAAGAGGTTCTGTGTTAAGTCCATTTATTTTTTAGGTAAGGTCTGGATGGATGAAAATATCAAGAAGCAGAACCATACTAATCAAGTCATGTTCTTCTTGGTCCGTGATAGAAGGCCCTATGGAAACAGCCCAATGGATTTTGGACAGGTTTTTAATATGTTCGATAATGAGCCGAGTACCGCAACAGTGAAGAATGATCTCCGGGATAGGTTTCAAGTGATGAGGAAATTTCATGCTACCGTTATTGGTGGGCCTTCTGGAATGAAGGAACAGGCTTTAGTTAAGAGATTCTTTAGAGTTAACAGTCATGTAACTTATAATCATCAGGAGGCAGCCAAGTATGAGAATCATACTGAAAACGCCTTGTTATTGTATATGGCATGTACTCATGCCTCTAATCCAGTGTATGCAACTATGAAAATACGCATCTACTTCTATGATTCAATATCAAATTAA |
Protein Sequence
|
MLKRPGDIIISTPASKVRRRLNFDSPYSSRAAAPIVQGINKRRSWTYRPMYRKPRIYRMYRSPDVPRGCEGPCKVQSYEQRDDIKHTGIVRCVSDVTRGSGITHRVGKRFCVKSIYFLGKVWMDENIKKQNHTNQVMFFLVRDRRPYGNSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMRKFHATVIGGPSGMKEQALVKRFFRVNSHVTYNHQEAAKYENHTENALLLYMACTHASNPVYATMKIRIYFYDSISN |
NCBI Accession
|
YP_009143524.1
|
Location
|
1078-1485 |
Gene Name
|
REn |
Protein Name
|
replication enhancer protein |
Coding Region
|
ATGGATTTGCGCACAGGGGAACTCATCACTGCTCCTCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAGCCAGAAACCATTCAACATGGATCACGACATCATTTCAATGCAGATCCGCTTCAATCACAACATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAAAGTATTTAGAAGATATCAAGTTCTTAAGTATTTAGATAGTTTAGGTGTAATTTCCATTAACAATGTAATTAGAGCAGTTGACCATGTATTGTATGATGTACTTGAAAAGACAATAGATGTAACAGAAACCCATGATATAAAATTTAATTTTTATTAA |
Protein Sequence
|
MDLRTGELITAPQAENGVFIWEINNPLYFKITEHSQKPFNMDHDIISMQIRFNHNIRKVLGIHKCFLNFRIWTTLRPQTGRFLKVFRRYQVLKYLDSLGVISINNVIRAVDHVLYDVLEKTIDVTETHDIKFNFY |
NCBI Accession
|
YP_009143525.1
|
Location
|
1226-1633 |
Gene Name
|
TrAp |
Protein Name
|
transcriptional activator protein |
Coding Region
|
ATGCAACCTTCATCACCCTCTATAAGCCACTGTTCTCAAGTACCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATCAGGCGTAAGCGTGTAGACCTAGACTGTGGCTGCTCATACTATCTTCACATCAACTGCATCAACCATGGATTTGCGCACAGGGGAACTCATCACTGCTCCTCAAGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTATATTTCAAGATAACAGAACACAGCCAGAAACCATTCAACATGGATCACGACATCATTTCAATGCAGATCCGCTTCAATCACAACATCAGGAAGGTACTGGGGATTCACAAATGTTTTCTCAACTTCCGAATCTGGACGACCTTACGGCCTCAGACTGGTCGTTTCTTAAAAGTATTTAG |
Protein Sequence
|
MQPSSPSISHCSQVPIKVQHKIAKKKPIRRKRVDLDCGCSYYLHINCINHGFAHRGTHHCSSSREWRFYLGDKQSPIFQDNRTQPETIQHGSRHHFNADPLQSQHQEGTGDSQMFSQLPNLDDLTASDWSFLKSI |
NCBI Accession
|
YP_009143526.1
|
Location
|
1542-2621 |
Gene Name
|
Rep |
Protein Name
|
Replication Associate Protein |
Coding Region
|
ATGGCTCCCCCAAAGCGTTTTAAAATAAATGCCAAAAATTATTTCCTTACTTATCCCCAGTGTTCTCTTTCATTAACTGAAGCCCTTTCCCAACTACAAACCCTAGAAACTCCTGTAAATAAATTATACATTAAAATTTGCAGAGAGCTTCACGAAAATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGAAAGTACCAGTGCACAAATAACAGATTCTTCGACCTGGTATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCATCATCTGATGTCAAGTCCTACATCGATAAGGATGGAGACACCATCGATTGGGGAGAGTTTCAGATCGATGGAAGGTCTGCAAGGGGGGGACAACAATCTGCAAACGATGCTTACGCAGCAGCTCTTAACTCAAGAAGTAAGTCGGAAGCTCTTAGAGTCATTAGGGAACTAGCCCCCAAAGATTACGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGAATTTTTCAGGAGCCTCCAGGTCCTTATATTTCTCCTTTTTTATCTTCTTCTTTTAATCAAGTTCCAGAGGAACTTGAGGTATGGGTGTCCGAGAACGTCATGTCTTCCGCTGCGCGGCCATGGAGACCTGATAGTATTGTAATCGAAGGTGATAGTCGTACCGGAAAAACAATGTGGGCACGATCGTTAGGTCCACACAATTATTTGTGTGGACATCTCGATCTCAGCCCTAAGATATTTTCAAATGATGCGTGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAGAGCAACACAAAATACGGGAAACCCATTCAAATTAAAGGTGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACTTCATCGTATAGAGAATATCTAGATGAAGAAAAAAACCTGTCATTGAAAAATTGGGCTCTCAAGAATGCAACCTTCATCACCCTCTATAAGCCACTGTTCTCAAGTACCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATCAGGCGTAA |
Protein Sequence
|
MAPPKRFKINAKNYFLTYPQCSLSLTEALSQLQTLETPVNKLYIKICRELHENGEPHLHALVQFEGKYQCTNNRFFDLVSPSRSTHFHPNIQGAKSSSDVKSYIDKDGDTIDWGEFQIDGRSARGGQQSANDAYAAALNSRSKSEALRVIRELAPKDYVLQFHNLNSNLDRIFQEPPGPYISPFLSSSFNQVPEELEVWVSENVMSSAARPWRPDSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKIFSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNLSLKNWALKNATFITLYKPLFSSTNQGPTQDSQEETNQA |
NCBI Accession
|
YP_009143527.1
|
Location
|
2162-2464 |
Gene Name
|
C4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGGAACCTCATCTGCATGCCCTTGTTCAGTTCGAAGGAAAGTACCAGTGCACAAATAACAGATTCTTCGACCTGGTATCCCCAAGTAGATCAACACATTTCCATCCAAACATTCAGGGAGCTAAATCATCATCTGATGTCAAGTCCTACATCGATAAGGATGGAGACACCATCGATTGGGGAGAGTTTCAGATCGATGGAAGGTCTGCAAGGGGGGGACAACAATCTGCAAACGATGCTTACGCAGCAGCTCTTAACTCAAGAAGTAAGTCGGAAGCTCTTAGAGTCATTAGGGAACTAG |
Protein Sequence
|
MGNLICMPLFSSKESTSAQITDSSTWYPQVDQHISIQTFRELNHHLMSSPTSIRMETPSIGESFRSMEGLQGGDNNLQTMLTQQLLTQEVSRKLLESLGN |