Tomato yellow leaf curl Malaga virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000842905.1 |
| Isolate |
Spain |
| Release date |
2015/2/12 |
| Submitter |
Monci,F., Sanchez-Campos,S., Navas-Castillo,J., Moriones,E. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGCTCCCCGATAAAGTAGTGGGCCCTACGCAGTAATTTGTGTCGACCAATGAAAATGCAGCCTCAAAGCTTAAATAATGTATTTACTTTGTTATAAACTTGGCTTCTAAGTTTTGAAAAAACCATCAATATGTGGGATCCTTTATTAAATGAATTTCCAGATTCAGTTCATGGTCTCCGTTGTATGCTTGCAATAAAATATTTGCAGCTAGTTGAAGAAACCTATGAACCCAATACTCTGGGTCATGATCTAATTAGGGATCTCATTTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACAGGCGATATACTAATTTCAACGCCCGTTTCGAAGGTTCGTCGAAAACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTCCCCTTTGGTTGTGAAGGTCCTTGTAAAGTCCAGTCGTATGAGCAGCGTGACGACGTCAAGCATACCGGTGTTGTTCGTTGTGTTAGTGATGTAACTAGGGGTTCTGGTATTACACATAGAGTAGGTAAACGGTTTTGTATTAAGTCAATCTATATTTTAGGGAAGATTTGGATGGATGAAAATATAAAAAAACAAAATCATACTAACCAGGTCATATTCTTTTTAGTACGAGACCGAAGGCCGTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCTAGTACGGCTACTGTGAAGAACGATTTAAGGGATAGGTACCAAGTAATGAGGAAGTTCCATGCCACGGTGGTAGGTGGTCCGTCAGGGATGAAGGAGCAGTGTCTGTTGAAGAGGTTTTTTAAAGTTAATACCCATGTAGTTTATAATCATCAAGAGCAGGCGAAGTATGAAAACCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACGTTGAAAATACGTATCTATTTTTATGATGCTGTAACAAATTAATAAAGATTGTATTTTATTTCATGTTGTTCAATTACATTTATTGTGTTTTCAAGTACATCATACAATACATGATCAACTGCTCTGATTACATTGTTAATTGAAATTACACCAATACTATCTAAATACTTAAGAACTTGATGTCTAAATACTCTTAAGAAACGACCAGTCTGAGGCTGTAATGTCGTCCAGATGCGGAAGTTGAGAAAACATTTGTGAATCCCCAATACCTTCCTGATGTTGTGGTTGAATCTTATCTGAATGGAAATGATGTCGTGGTTCATTAGAAATGGCCTCTGGCTGTGTTCTGTTATCTTGAAATAGAGGGGATTGTTTATCTCCCAGATAAAAACGCCATTCTCTGCCTGAGGAGCAGTGATGAGTTCCCCTGTGCGTGAATCCATGATTGTTGCAGTTGAGGTGGAGGTAGTATGAGCAGCCACAGTCTAGGTCTATACGCTTACGCCTTATTGGTTTCTTCTTGGCTATCTTGTGTTGGACCTTGATTGATACTTGCGAACAGTGGCTCGTAGAGGGTGACGAAGGTTGCATTCTTGAGAGCCCAATTTTTCAAGGATATGTTTTTTTCTTCGTCTAGATATTCCCTATATGAGGAGGTAGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCCCCTTTAATTTGAATGGGCTTCCCGTACTTTGTGTTGCTTTGCCAGTCCCTCTGGGCCCCCATGAATTCCTTGAAGTGCTTTAAATAATGCGGGTCTACGTCATCAATGACGTTGTACCATGCATCATTACTGTATACCTTTGGGCTTAGGTCTAGATGTCCACATAAATAATTATGTGGGCCTAGAGACCTGGCCCACATTGTTTTGCCTGTTCTGCTATCACCCTCAATGACAATACTATTAGGTCTCCATGGCCGCGCAGCGGAAGACACGACGTTCTCGGACACCCATACTTCAAGTTCATCTGGAACTTGATTAAAAGATGAAGATAAAAAGGGAGAAATATAAGGAGCCGGAGGCTCCTGAAAAATTCTATCTAAATTACTATTTAAATTATGAAATTGTAAAATATAATCTTTCGGTATTAATTCTTTAATGATTCTAAGAGCCTCTGACTTACTGCCTGAGTTAAGAGCTGCGGCGTAAGCGTCATTGGCTGACTGCTGACCCCCACGTGCAGATCGTCCGTCGATCTGAAACTCACCCCAGTCGACGGTGTCTCCGTCCTTATCGACATAAGACTTGACATCTGAACTGGATTTAGCTCCCTGAATGTTTGGATGGAAATGTGCTGCCCTGCTTGGGGATACCAGGTCGAAGAATCGCTGATTTTGGCACTTGAATTTCCCTTCAAATTGGATAAGCACATGGAGATGTGGTTCCCCATTCTCGTGGAGTTCTCTGCAAACTTTGATGTATTTTTTATTTGTTGGGGTTTCTAGGTTTTTTAACTGGGAAAGTGCTTCTTCTTTCGTTAAGGAGCACTTAGGATATGTGAGGAAATAATTTTTGCAATTTATTTGGAAGCGCTTAGGGGGAGCCATATGGTCAATGAGTACCGATTGACCAAGATTTTTACACTTATCCCTGGTGTATCGGTACTCAATATATAGTGAGTACCAAATGGCATATTGGTAATTTTGTAAAAGTACAATGCAATTCAAAATTCAAAATTCAAAAATCAAATCATTAAAGCGGCCATCCGTA
Gene Information
|
NCBI Accession
|
NP_786876.1
|
|
Location
|
149-496 |
|
Gene Name
|
V1 |
|
Protein Name
|
precoat protein V1 |
|
Coding Region
|
ATGTGGGATCCTTTATTAAATGAATTTCCAGATTCAGTTCATGGTCTCCGTTGTATGCTTGCAATAAAATATTTGCAGCTAGTTGAAGAAACCTATGAACCCAATACTCTGGGTCATGATCTAATTAGGGATCTCATTTCCGTCATTCGTGCTCGTGACTATGCCGAAGCGAACAGGCGATATACTAATTTCAACGCCCGTTTCGAAGGTTCGTCGAAAACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPDSVHGLRCMLAIKYLQLVEETYEPNTLGHDLIRDLISVIRARDYAEANRRYTNFNARFEGSSKTELRQPVYQPCCCPHCPRHQASIMDLQAHVSKAADVQNVQKP |
|
NCBI Accession
|
NP_786877.1
|
|
Location
|
309-1082 |
|
Gene Name
|
V2 |
|
Protein Name
|
coat protein V2 |
|
Coding Region
|
ATGCCGAAGCGAACAGGCGATATACTAATTTCAACGCCCGTTTCGAAGGTTCGTCGAAAACTGAACTTCGACAGCCCGTATACCAGCCGTGCTGCTGCCCCCACTGTCCAAGGCATCAAGCGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCGCGGATGTACAGAATGTACAGAAGCCCTGATGTCCCCTTTGGTTGTGAAGGTCCTTGTAAAGTCCAGTCGTATGAGCAGCGTGACGACGTCAAGCATACCGGTGTTGTTCGTTGTGTTAGTGATGTAACTAGGGGTTCTGGTATTACACATAGAGTAGGTAAACGGTTTTGTATTAAGTCAATCTATATTTTAGGGAAGATTTGGATGGATGAAAATATAAAAAAACAAAATCATACTAACCAGGTCATATTCTTTTTAGTACGAGACCGAAGGCCGTATGGAACTAGTCCTATGGATTTTGGTCAAGTTTTTAACATGTTTGATAATGAACCTAGTACGGCTACTGTGAAGAACGATTTAAGGGATAGGTACCAAGTAATGAGGAAGTTCCATGCCACGGTGGTAGGTGGTCCGTCAGGGATGAAGGAGCAGTGTCTGTTGAAGAGGTTTTTTAAAGTTAATACCCATGTAGTTTATAATCATCAAGAGCAGGCGAAGTATGAAAACCATACTGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCTTCTAACCCAGTGTATGCTACGTTGAAAATACGTATCTATTTTTATGATGCTGTAACAAATTAA |
|
Protein Sequence
|
MPKRTGDILISTPVSKVRRKLNFDSPYTSRAAAPTVQGIKRRSWTYRPMYRKPRMYRMYRSPDVPFGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCIKSIYILGKIWMDENIKKQNHTNQVIFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMRKFHATVVGGPSGMKEQCLLKRFFKVNTHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDAVTN |
|
NCBI Accession
|
NP_786878.1
|
|
Location
|
1079-1483 |
|
Gene Name
|
C3 |
|
Protein Name
|
C3 protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTCTATTTCAAGATAACAGAACACAGCCAGAGGCCATTTCTAATGAACCACGACATCATTTCCATTCAGATAAGATTCAACCACAACATCAGGAAGGTATTGGGGATTCACAAATGTTTTCTCAACTTCCGCATCTGGACGACATTACAGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGACATCAAGTTCTTAAGTATTTAGATAGTATTGGTGTAATTTCAATTAACAATGTAATCAGAGCAGTTGATCATGTATTGTATGATGTACTTGAAAACACAATAAATGTAATTGAACAACATGAAATAAAATACAATCTTTATTAA |
|
Protein Sequence
|
MDSRTGELITAPQAENGVFIWEINNPLYFKITEHSQRPFLMNHDIISIQIRFNHNIRKVLGIHKCFLNFRIWTTLQPQTGRFLRVFRHQVLKYLDSIGVISINNVIRAVDHVLYDVLENTINVIEQHEIKYNLY |
|
NCBI Accession
|
NP_786879.1
|
|
Location
|
1224-1631 |
|
Gene Name
|
C2 |
|
Protein Name
|
C2 protein |
|
Coding Region
|
ATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCGCAAGTATCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATAAGGCGTAAGCGTATAGACCTAGACTGTGGCTGCTCATACTACCTCCACCTCAACTGCAACAATCATGGATTCACGCACAGGGGAACTCATCACTGCTCCTCAGGCAGAGAATGGCGTTTTTATCTGGGAGATAAACAATCCCCTCTATTTCAAGATAACAGAACACAGCCAGAGGCCATTTCTAATGAACCACGACATCATTTCCATTCAGATAAGATTCAACCACAACATCAGGAAGGTATTGGGGATTCACAAATGTTTTCTCAACTTCCGCATCTGGACGACATTACAGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG |
|
Protein Sequence
|
MQPSSPSTSHCSQVSIKVQHKIAKKKPIRRKRIDLDCGCSYYLHLNCNNHGFTHRGTHHCSSGREWRFYLGDKQSPLFQDNRTQPEAISNEPRHHFHSDKIQPQHQEGIGDSQMFSQLPHLDDITASDWSFLKSI |
|
NCBI Accession
|
NP_786880.1
|
|
Location
|
1540-2619 |
|
Gene Name
|
C1 |
|
Protein Name
|
replication associated protein C1 |
|
Coding Region
|
ATGGCTCCCCCTAAGCGCTTCCAAATAAATTGCAAAAATTATTTCCTCACATATCCTAAGTGCTCCTTAACGAAAGAAGAAGCACTTTCCCAGTTAAAAAACCTAGAAACCCCAACAAATAAAAAATACATCAAAGTTTGCAGAGAACTCCACGAGAATGGGGAACCACATCTCCATGTGCTTATCCAATTTGAAGGGAAATTCAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAAGCAGGGCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGTTCAGATGTCAAGTCTTATGTCGATAAGGACGGAGACACCGTCGACTGGGGTGAGTTTCAGATCGACGGACGATCTGCACGTGGGGGTCAGCAGTCAGCCAATGACGCTTACGCCGCAGCTCTTAACTCAGGCAGTAAGTCAGAGGCTCTTAGAATCATTAAAGAATTAATACCGAAAGATTATATTTTACAATTTCATAATTTAAATAGTAATTTAGATAGAATTTTTCAGGAGCCTCCGGCTCCTTATATTTCTCCCTTTTTATCTTCATCTTTTAATCAAGTTCCAGATGAACTTGAAGTATGGGTGTCCGAGAACGTCGTGTCTTCCGCTGCGCGGCCATGGAGACCTAATAGTATTGTCATTGAGGGTGATAGCAGAACAGGCAAAACAATGTGGGCCAGGTCTCTAGGCCCACATAATTATTTATGTGGACATCTAGACCTAAGCCCAAAGGTATACAGTAATGATGCATGGTACAACGTCATTGATGACGTAGACCCGCATTATTTAAAGCACTTCAAGGAATTCATGGGGGCCCAGAGGGACTGGCAAAGCAACACAAAGTACGGGAAGCCCATTCAAATTAAAGGGGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCTACCTCCTCATATAGGGAATATCTAGACGAAGAAAAAAACATATCCTTGAAAAATTGGGCTCTCAAGAATGCAACCTTCGTCACCCTCTACGAGCCACTGTTCGCAAGTATCAATCAAGGTCCAACACAAGATAGCCAAGAAGAAACCAATAAGGCGTAA |
|
Protein Sequence
|
MAPPKRFQINCKNYFLTYPKCSLTKEEALSQLKNLETPTNKKYIKVCRELHENGEPHLHVLIQFEGKFKCQNQRFFDLVSPSRAAHFHPNIQGAKSSSDVKSYVDKDGDTVDWGEFQIDGRSARGGQQSANDAYAAALNSGSKSEALRIIKELIPKDYILQFHNLNSNLDRIFQEPPAPYISPFLSSSFNQVPDELEVWVSENVVSSAARPWRPNSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNISLKNWALKNATFVTLYEPLFASINQGPTQDSQEETNKA |
|
NCBI Accession
|
NP_786881.1
|
|
Location
|
2160-2462 |
|
Gene Name
|
C4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGGGGAACCACATCTCCATGTGCTTATCCAATTTGAAGGGAAATTCAAGTGCCAAAATCAGCGATTCTTCGACCTGGTATCCCCAAGCAGGGCAGCACATTTCCATCCAAACATTCAGGGAGCTAAATCCAGTTCAGATGTCAAGTCTTATGTCGATAAGGACGGAGACACCGTCGACTGGGGTGAGTTTCAGATCGACGGACGATCTGCACGTGGGGGTCAGCAGTCAGCCAATGACGCTTACGCCGCAGCTCTTAACTCAGGCAGTAAGTCAGAGGCTCTTAGAATCATTAAAGAATTAA |
|
Protein Sequence
|
MGNHISMCLSNLKGNSSAKISDSSTWYPQAGQHISIQTFRELNPVQMSSLMSIRTETPSTGVSFRSTDDLHVGVSSQPMTLTPQLLTQAVSQRLLESLKN |