Tomato yellow leaf curl Indonesia virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000869285.1 |
Isolate |
Indonesia:Lembang |
Release date |
2015/2/13 |
Submitter |
Tsai,W.S., Shih,S.L., Green,S.K., Akkermans,D., Jan,F.-J. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCTACAGGCCGCCGGGGCCCGGGGTCACTATGGTCCCCCCCCACTTTAGCTGCTTTTGCTTTTGCTTTAATGTGGTCCCGTAATAAATGAGAGAGCGCGATGAGCGCTTAGTTGATTTGTGGTCCTTCTATAAAACGTGCTGGGCACGGAGAAAGCTGAATAGCCATGTGGGATCCTCTTTTAAACGAATTTCCGGATTCTGTTCACGGTTTTCGGTGTATGCTCGCAATAAAGTATTTGCAAGGCGTTGAAGCAACCTACGCCCCTGATACTGTCGGTTACGACCTAGTTCGAGATCTGATCTCAGTTGTTCGTGCGAGCAATTATGCTGAAGCGTGCCGGAGATATAGCCTTTTCCGGTCCCGTATCGAAAGTACGCCGTCGTCTCAATTACGACAGCCCAGGTACCAGCCGTGCTGCTGTACTCACTGCCCTCGGCATAAATCGAAAGAAGTCTTGGACTTCTCGGCCTATGTACCGGAAGCCCAGGATTTACCGGATGTACCGAACAGCTGATGTCCCTAGGGGATGTGAAGGTCCTTGCAAGATTCAATCCTTTGAATCTCGACATGATATTGCTCACACCGGTAAGGTTATGTGTGTGACGGATGTTACTCGTGGCGGTGGTTTAACCCACCGTACTGGGAAGAGATTTTGCGTTAAGTCCCTCTATATCCTTGGCAAAATCTGGATGGATGAAAATATCAAGACTAAGAATCACACTAACACGGTCATGTTCTATGTTGTTCGGGATCGTAGACCCTATGGTACTCCTCAAGATTTTGGACAAGTGTTTAACATGTTCGATAACGAACCTAGCACTGCAACTGTCAAGAATGATCTTCGAGATCGGTTTCAAGTTTTGCGGAAGTTCACGGCAACTGTTGTTGGTGGTCAGTATGCTTGTAAGGAACAAACGTTAGTTAGGAAGTTCATGAGATTGAACAATTATGTTGTTTACAACCATCAGGAAACCGCAAAATATGAGAATCATACAGAGAATGCTCTGTTATTGTACATGGCATCTACGCATGCCTCTAACCCTGTGTATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAATGTTGAATTTTATTTCATAATCTGGTTGTACATCAATAGTGCGTTCTAGCACTTTAAACAAGACATGGTCTACAGCTCTAATTACATTATTAATTGAAATTACACCTAAATTATTCAAGTATTTAATACATTGAGTCTTAAAGACTTTTAAGAAAAGCCCAGTCGGAGGGTGTAAGTAAGTCCAAACTTGGAACGTCAGAAAACACCGGTGTATTCCCAACGCTTTCCTCAGGTTGTGGTTGAACTGCAGCCGTATTGTTATCACGTCGTGGTTCGTGTTGAACGGCCGGCTGTGATGGCTGAGTATCTTGAAATAGAGGGGATTTTGAATCTCCCAAATATAGACGCCATTCCTGGCTTGAGCTGCAGTGATGTACTCCCCTGTGCGTAAATCCATGATTAGCACAGTTTATTGACACGTAGTATGAGCAACCGCAATTAAGGTCTACCCGCCGTCGTCTTATTATCTTCTTTTTAGCAATCCGGTGCTGGACTTTGATGGGAACCTGAGTACAGTGGTCTCTCGAGGGTGATGAATTCTGCATTATGAAGAGACCAATTTTTAAGTGCGATGTTTTTAGGTTCGTCTAAAAACTCTTTATATGAAGATGTGGGTCCAGCATTACATAAAAAGATGGTCGGTATCCCGCCTTTAATTTGAATGGGTCTACCATACTTTGTATTGCTTTGCCAGTCCATCTGGGCCCCCATAAACTCTTTAAAGTGCTTTAGGTAATGCGGATCGACGTCATCAATGACGTTATACCATGCGTCATTTGAGTAAACCCTAGGATTGAGATCTAGATGGCCGCACAAGTAATTGTGCCTACCAAGCGATCTAGCCCACATGGTTTTACCTGTACGACTATCACCTTGTAACACCAGACTCTTTGGTCTTAATGGCCGCGCAGCGGGGTCGACTATGTTCTCGGCGACCCATTCTTCAAGTTCTTCAGGAACCTGGTCAAAGGATGAAGATAAGAATGGAGAGGTAAAGACTGGTTGCGGAGTCATGAAGATCTTGTCAAGATTTGTGTTCAAGTTATGAAACTGCAAGATGTAATCTTTAGGCGCAAGTTCTTTAAGAATATTCAGAGCCTCCGCTTTGTTTCCTGCATTCATAGCTTTTGCATAAGCGTCGTTAGCGGATTGCTTTCCGCCTCTTGAAGATCTTCCATCTATTTGGAAGGTACCCCATTCAAGGGTATCACCATCCTTTTCGATATATGCTTTGACATCGGAGCTTGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGTTGATCTGGTTGGGGATACCAGATCGAAGAACCTCTTGTTCTTTGTCTTGAACTTACCCTCAAATTGGATAAGCACATGGAGATGTGGTTCCCCATCCTCGTGAAGCTCTGAGCAGATTTTGATATATTTTTTATTTGTTGGGGTATTCAAATTTCTAATTTGAGAGAGAGCTTCGCTTTTAGAGAGAGAGCAGTGAGGATAGGTGAGGAAATAGTTTTTAGCGTTTATTTGAAAACGCTTTGTGAGAGAGTTATTAGAGGGGGTTCCCCGATTGCTCTCCATTCCATCTATCGTATGTATATTGGGGAACGGGGACCTATAAATACTTCTGTCCCCAATAGGTTTTGTGCTTACGTGGCGGCCTGTAGTATAATATT
Gene Information
NCBI Accession
|
YP_699989.1
|
Location
|
167-517 |
Gene Name
|
V2 |
Protein Name
|
precoat protein |
Coding Region
|
ATGTGGGATCCTCTTTTAAACGAATTTCCGGATTCTGTTCACGGTTTTCGGTGTATGCTCGCAATAAAGTATTTGCAAGGCGTTGAAGCAACCTACGCCCCTGATACTGTCGGTTACGACCTAGTTCGAGATCTGATCTCAGTTGTTCGTGCGAGCAATTATGCTGAAGCGTGCCGGAGATATAGCCTTTTCCGGTCCCGTATCGAAAGTACGCCGTCGTCTCAATTACGACAGCCCAGGTACCAGCCGTGCTGCTGTACTCACTGCCCTCGGCATAAATCGAAAGAAGTCTTGGACTTCTCGGCCTATGTACCGGAAGCCCAGGATTTACCGGATGTACCGAACAGCTGA |
Protein Sequence
|
MWDPLLNEFPDSVHGFRCMLAIKYLQGVEATYAPDTVGYDLVRDLISVVRASNYAEACRRYSLFRSRIESTPSSQLRQPRYQPCCCTHCPRHKSKEVLDFSAYVPEAQDLPDVPNS |
NCBI Accession
|
YP_699990.1
|
Location
|
327-1100 |
Gene Name
|
V1 |
Protein Name
|
coat protein |
Coding Region
|
ATGCTGAAGCGTGCCGGAGATATAGCCTTTTCCGGTCCCGTATCGAAAGTACGCCGTCGTCTCAATTACGACAGCCCAGGTACCAGCCGTGCTGCTGTACTCACTGCCCTCGGCATAAATCGAAAGAAGTCTTGGACTTCTCGGCCTATGTACCGGAAGCCCAGGATTTACCGGATGTACCGAACAGCTGATGTCCCTAGGGGATGTGAAGGTCCTTGCAAGATTCAATCCTTTGAATCTCGACATGATATTGCTCACACCGGTAAGGTTATGTGTGTGACGGATGTTACTCGTGGCGGTGGTTTAACCCACCGTACTGGGAAGAGATTTTGCGTTAAGTCCCTCTATATCCTTGGCAAAATCTGGATGGATGAAAATATCAAGACTAAGAATCACACTAACACGGTCATGTTCTATGTTGTTCGGGATCGTAGACCCTATGGTACTCCTCAAGATTTTGGACAAGTGTTTAACATGTTCGATAACGAACCTAGCACTGCAACTGTCAAGAATGATCTTCGAGATCGGTTTCAAGTTTTGCGGAAGTTCACGGCAACTGTTGTTGGTGGTCAGTATGCTTGTAAGGAACAAACGTTAGTTAGGAAGTTCATGAGATTGAACAATTATGTTGTTTACAACCATCAGGAAACCGCAAAATATGAGAATCATACAGAGAATGCTCTGTTATTGTACATGGCATCTACGCATGCCTCTAACCCTGTGTATGCAACTTTGAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence
|
MLKRAGDIAFSGPVSKVRRRLNYDSPGTSRAAVLTALGINRKKSWTSRPMYRKPRIYRMYRTADVPRGCEGPCKIQSFESRHDIAHTGKVMCVTDVTRGGGLTHRTGKRFCVKSLYILGKIWMDENIKTKNHTNTVMFYVVRDRRPYGTPQDFGQVFNMFDNEPSTATVKNDLRDRFQVLRKFTATVVGGQYACKEQTLVRKFMRLNNYVVYNHQETAKYENHTENALLLYMASTHASNPVYATLKIRIYFYDSITN |
NCBI Accession
|
YP_699991.1
|
Location
|
1097-1501 |
Gene Name
|
C3 |
Protein Name
|
C3 protein |
Coding Region
|
ATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCAGGAATGGCGTCTATATTTGGGAGATTCAAAATCCCCTCTATTTCAAGATACTCAGCCATCACAGCCGGCCGTTCAACACGAACCACGACGTGATAACAATACGGCTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCGGTGTTTTCTGACGTTCCAAGTTTGGACTTACTTACACCCTCCGACTGGGCTTTTCTTAAAAGTCTTTAAGACTCAATGTATTAAATACTTGAATAATTTAGGTGTAATTTCAATTAATAATGTAATTAGAGCTGTAGACCATGTCTTGTTTAAAGTGCTAGAACGCACTATTGATGTACAACCAGATTATGAAATAAAATTCAACATTTATTAA |
Protein Sequence
|
MDLRTGEYITAAQARNGVYIWEIQNPLYFKILSHHSRPFNTNHDVITIRLQFNHNLRKALGIHRCFLTFQVWTYLHPPTGLFLKVFKTQCIKYLNNLGVISINNVIRAVDHVLFKVLERTIDVQPDYEIKFNIY |
NCBI Accession
|
YP_699992.1
|
Location
|
1242-1649 |
Gene Name
|
C2 |
Protein Name
|
C2 protein |
Coding Region
|
ATGCAGAATTCATCACCCTCGAGAGACCACTGTACTCAGGTTCCCATCAAAGTCCAGCACCGGATTGCTAAAAAGAAGATAATAAGACGACGGCGGGTAGACCTTAATTGCGGTTGCTCATACTACGTGTCAATAAACTGTGCTAATCATGGATTTACGCACAGGGGAGTACATCACTGCAGCTCAAGCCAGGAATGGCGTCTATATTTGGGAGATTCAAAATCCCCTCTATTTCAAGATACTCAGCCATCACAGCCGGCCGTTCAACACGAACCACGACGTGATAACAATACGGCTGCAGTTCAACCACAACCTGAGGAAAGCGTTGGGAATACACCGGTGTTTTCTGACGTTCCAAGTTTGGACTTACTTACACCCTCCGACTGGGCTTTTCTTAAAAGTCTTTAA |
Protein Sequence
|
MQNSSPSRDHCTQVPIKVQHRIAKKKIIRRRRVDLNCGCSYYVSINCANHGFTHRGVHHCSSSQEWRLYLGDSKSPLFQDTQPSQPAVQHEPRRDNNTAAVQPQPEESVGNTPVFSDVPSLDLLTPSDWAFLKSL |
NCBI Accession
|
YP_699993.1
|
Location
|
1579-2667 |
Gene Name
|
C1 |
Protein Name
|
replication-associated protein |
Coding Region
|
ATGGAGAGCAATCGGGGAACCCCCTCTAATAACTCTCTCACAAAGCGTTTTCAAATAAACGCTAAAAACTATTTCCTCACCTATCCTCACTGCTCTCTCTCTAAAAGCGAAGCTCTCTCTCAAATTAGAAATTTGAATACCCCAACAAATAAAAAATATATCAAAATCTGCTCAGAGCTTCACGAGGATGGGGAACCACATCTCCATGTGCTTATCCAATTTGAGGGTAAGTTCAAGACAAAGAACAAGAGGTTCTTCGATCTGGTATCCCCAACCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGATGTCAAAGCATATATCGAAAAGGATGGTGATACCCTTGAATGGGGTACCTTCCAAATAGATGGAAGATCTTCAAGAGGCGGAAAGCAATCCGCTAACGACGCTTATGCAAAAGCTATGAATGCAGGAAACAAAGCGGAGGCTCTGAATATTCTTAAAGAACTTGCGCCTAAAGATTACATCTTGCAGTTTCATAACTTGAACACAAATCTTGACAAGATCTTCATGACTCCGCAACCAGTCTTTACCTCTCCATTCTTATCTTCATCCTTTGACCAGGTTCCTGAAGAACTTGAAGAATGGGTCGCCGAGAACATAGTCGACCCCGCTGCGCGGCCATTAAGACCAAAGAGTCTGGTGTTACAAGGTGATAGTCGTACAGGTAAAACCATGTGGGCTAGATCGCTTGGTAGGCACAATTACTTGTGCGGCCATCTAGATCTCAATCCTAGGGTTTACTCAAATGACGCATGGTATAACGTCATTGATGACGTCGATCCGCATTACCTAAAGCACTTTAAAGAGTTTATGGGGGCCCAGATGGACTGGCAAAGCAATACAAAGTATGGTAGACCCATTCAAATTAAAGGCGGGATACCGACCATCTTTTTATGTAATGCTGGACCCACATCTTCATATAAAGAGTTTTTAGACGAACCTAAAAACATCGCACTTAAAAATTGGTCTCTTCATAATGCAGAATTCATCACCCTCGAGAGACCACTGTACTCAGGTTCCCATCAAAGTCCAGCACCGGATTGCTAA |
Protein Sequence
|
MESNRGTPSNNSLTKRFQINAKNYFLTYPHCSLSKSEALSQIRNLNTPTNKKYIKICSELHEDGEPHLHVLIQFEGKFKTKNKRFFDLVSPTRSTHFHPNIQGAKSSSDVKAYIEKDGDTLEWGTFQIDGRSSRGGKQSANDAYAKAMNAGNKAEALNILKELAPKDYILQFHNLNTNLDKIFMTPQPVFTSPFLSSSFDQVPEELEEWVAENIVDPAARPLRPKSLVLQGDSRTGKTMWARSLGRHNYLCGHLDLNPRVYSNDAWYNVIDDVDPHYLKHFKEFMGAQMDWQSNTKYGRPIQIKGGIPTIFLCNAGPTSSYKEFLDEPKNIALKNWSLHNAEFITLERPLYSGSHQSPAPDC |
NCBI Accession
|
YP_699994.1
|
Location
|
2283-2480 |
Gene Name
|
C4 |
Protein Name
|
C4 protein |
Coding Region
|
ATGGGGAACCACATCTCCATGTGCTTATCCAATTTGAGGGTAAGTTCAAGACAAAGAACAAGAGGTTCTTCGATCTGGTATCCCCAACCAGATCAACACATTTCCATCCGAACATTCAGGGAGCTAAATCAAGCTCCGATGTCAAAGCATATATCGAAAAGGATGGTGATACCCTTGAATGGGGTACCTTCCAAATAG |
Protein Sequence
|
MGNHISMCLSNLRVSSRQRTRGSSIWYPQPDQHISIRTFRELNQAPMSKHISKRMVIPLNGVPSK |