Tomato yellow leaf curl Guangdong virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000868505.1 |
| Isolate |
China: Guangdong, Guangzhou |
| Release date |
2015/2/13 |
| Submitter |
He,Z.F., Yu,H. |
| Host |
|
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGATTTTTTTATGGTGGTCCCCCCGCACTAACTTTTGTCGGCCAATAGAAACGCTCCCTCAAAGCTTAATTATGTAATGGTCCCCTATAAAACTTGGTCCCCAAGTACTCACTGTAAACATGTGGGATCCGCTTTTAAACGAGTTCCCTGAAACCGTACATGGTTTTAGGTGTATGCTAGCGATTAAGTATTTACAATTAGTAGAAAATACATACTCGCCTGATACGTTAGGATACGATTTAATACGTGATTTAATATTGGTCATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCTTCCAAGGTGCGTCGCCGGTTGAACTTCGACAGCCCTTATGTCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGGAGATCATGGGTGAATCGGCCCATGTATCGAAAGCCCAAGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGAGGTTGTGAAGGTCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTTGTCCATGTAGGCAAGGTCATTTGTGTGTCTGATGTTACTCGTGGTAATGGGTTGACTCATCGTGTTGGGAAGGGGTTTTGTGTCAAGTCTGTGTATGTTTTAGGTAAAATATGGATGGATGAGAATATTAAGACCAAAAATCACACTAACACTGTGATGTTCTTTTTAGTTCGTGATAGAAGACCCTTTGGCACTCCTCAGGATTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCAAGTACAGCAACTGTTAAGAATGATAACAGAGATCGTTTTCAAGTTCTCCGTCGATTTCAAGCGACTGTCACCGGTGGTCAGTATGCAAGTAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAATAATCATGTAACTTATAACCATCAGGAGGCTGCGAAGTATGACAACCATACTGAGAATGCTCTTTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAAATCAGGATCTATTTTTATGATTCTGTTCAGAATTAATAAAGATTGAATTTTATTATACTTGACAATTTTGTTTCAATTGTCCCTTCCAATACATCATACAATACATGTGAAATTGCTCTAATTACATTGTTGATACTAATCACTCCTAAATTTCCTAAATATTTCATACATTGATACTTAAATACTCTTAAGAAATGCGAGGTCTGAGGATGTAAACGAGTCCAGATTTGGCAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAATTGAATTGTATTTGGACGGTTATGATATCGTGGTTCCTCAGGAATGGTCTCTCTAGGTGTTGGGTTATCTTGAAATAGAGGGGATTGTTGATTGTCCAGGTATATACGCCATTCTCTGCTTGAGTTGCAGTGATGAGTTCCCCTGTGCGAAAATCCATGTGATGCGCAGTTAATTCCAAAATAGTAAGAGCATCCACAATCGAGATCAACTCTACGTCTGCGAACTGGTCTCTTCTTCGCGATTTTGTGTTGGACCTTGATCGGTACTTGAGTACAATGGCTCCGTGAGGGTGACGAATGTTGCATTTTTTAATGCCCAGTTTTTGAGTGCTGCGTTCTTTTCTTCGTCCAAGTATTCTTTATATGATGATGTTGGTCCTGGATTGCAAAGGAAGATTGACGGGATACCGCCTTTAATTTGAATTGGCTTTCCATACTTTGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAATGCTTTAGATAGTGGGGATCTACGTCATCAATGACGTTATACCAAGCATCATTGCTGTATACTTTTGGACTGAGATCTAGATGGCCACACAAATAATTGTGTAGACCCAGAGACCTTGCCCACGTCGTCTTCCCTGTACGACTATCACCCTCTATGACAATACTATTGGGTCTCCATGGCCGCGCAGCTGCATTCATGACATTTTCGGAAACCCATTCCTCAAGTTCTTCTGGAACTTGATCAAAAGAAGAAGATAAAAAAGGAGAAATATAAACCTCTAATGGAGGTGTAAAAATCCTATCCAAATTATTAGTTAAATTATGAAATTGTAAAACAAAATCTTTGGGAGCTTTCTCCCTTAATATATTGAGGGCCGCAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCTGTCTTTTTCCATGTAGGACTTAACATCTGTTGAGCTCTTAGCGCTCTGAATGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATATGAGATCGAAGAATCTGTTGTTTTGGCATTTGAACTTTCCTTCGAATTGGATGAGGATATGCAGGTGAGGAGTCCCATCTTCGTGTAGTTCCCTGCAGATTCGAATGAATAATTTATTGGTTGGGGTTGATAGGGCTAATAATTGGGAAAGTGCTTCTTCTTTGCTAAGCGAGCAGTGTGGGTATGTGAGGAAATAGTTCTTGGCATTTATTATAAATTTTTTTGGCGGAGGCATATTGACTTGGTCAATCGGGTCCTCTCAAACTTGTCTATGCAATTGGGGAATGGGTCCTTATTTATATGTGAGGACCTAAATGGCACAATTGTAATTATGCATACGAAATTCAAATTGGTAAAGCGGCCATCCGTATAATATT
Gene Information
|
NCBI Accession
|
YP_764449.1
|
|
Location
|
132-482 |
|
Gene Name
|
AV2 |
|
Protein Name
|
AV2 protein |
|
Coding Region
|
ATGTGGGATCCGCTTTTAAACGAGTTCCCTGAAACCGTACATGGTTTTAGGTGTATGCTAGCGATTAAGTATTTACAATTAGTAGAAAATACATACTCGCCTGATACGTTAGGATACGATTTAATACGTGATTTAATATTGGTCATTCGTGCTAGGGATTATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCTTCCAAGGTGCGTCGCCGGTTGAACTTCGACAGCCCTTATGTCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGGAGATCATGGGTGAATCGGCCCATGTATCGAAAGCCCAAGATGTACAGGATGTACAAAAGCCCTGA |
|
Protein Sequence
|
MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLILVIRARDYVEASRRYSHFHSRFQGASPVELRQPLCQPCCCPHCPRHKQKEIMGESAHVSKAQDVQDVQKP |
|
NCBI Accession
|
YP_764450.1
|
|
Location
|
292-1065 |
|
Gene Name
|
AV1 |
|
Protein Name
|
capsid protein |
|
Coding Region
|
ATGTCGAAGCGTCCCGCAGATATAGTCATTTCCACTCCCGCTTCCAAGGTGCGTCGCCGGTTGAACTTCGACAGCCCTTATGTCAGCCGTGCTGCTGTCCCCACTGTCCTCGTCACAAACAAAAGGAGATCATGGGTGAATCGGCCCATGTATCGAAAGCCCAAGATGTACAGGATGTACAAAAGCCCTGATGTTCCTCGAGGTTGTGAAGGTCCATGTAAAGTCCAGTCTTATGAACAGCGTCATGATGTTGTCCATGTAGGCAAGGTCATTTGTGTGTCTGATGTTACTCGTGGTAATGGGTTGACTCATCGTGTTGGGAAGGGGTTTTGTGTCAAGTCTGTGTATGTTTTAGGTAAAATATGGATGGATGAGAATATTAAGACCAAAAATCACACTAACACTGTGATGTTCTTTTTAGTTCGTGATAGAAGACCCTTTGGCACTCCTCAGGATTTTGGTCAGGTGTTTAACATGTATGATAATGAGCCAAGTACAGCAACTGTTAAGAATGATAACAGAGATCGTTTTCAAGTTCTCCGTCGATTTCAAGCGACTGTCACCGGTGGTCAGTATGCAAGTAAGGAGCAAGCAATAGTTAGGAAGTTTATGAAGGTGAATAATCATGTAACTTATAACCATCAGGAGGCTGCGAAGTATGACAACCATACTGAGAATGCTCTTTTATTGTATATGGCATGTACTCATGCTAGTAATCCAGTGTATGCTACTTTGAAAATCAGGATCTATTTTTATGATTCTGTTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRRLNFDSPYVSRAAVPTVLVTNKRRSWVNRPMYRKPKMYRMYKSPDVPRGCEGPCKVQSYEQRHDVVHVGKVICVSDVTRGNGLTHRVGKGFCVKSVYVLGKIWMDENIKTKNHTNTVMFFLVRDRRPFGTPQDFGQVFNMYDNEPSTATVKNDNRDRFQVLRRFQATVTGGQYASKEQAIVRKFMKVNNHVTYNHQEAAKYDNHTENALLLYMACTHASNPVYATLKIRIYFYDSVQN |
|
NCBI Accession
|
YP_764451.1
|
|
Location
|
1062-1466 |
|
Gene Name
|
AC3 |
|
Protein Name
|
AC3 protein |
|
Coding Region
|
ATGGATTTTCGCACAGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGTATATACCTGGACAATCAACAATCCCCTCTATTTCAAGATAACCCAACACCTAGAGAGACCATTCCTGAGGAACCACGATATCATAACCGTCCAAATACAATTCAATTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAAGTATCAATGTATGAAATATTTAGGAAATTTAGGAGTGATTAGTATCAACAATGTAATTAGAGCAATTTCACATGTATTGTATGATGTATTGGAAGGGACAATTGAAACAAAATTGTCAAGTATAATAAAATTCAATCTTTATTAA |
|
Protein Sequence
|
MDFRTGELITATQAENGVYTWTINNPLYFKITQHLERPFLRNHDIITVQIQFNYNLRKALGIHKCFLTCQIWTRLHPQTSHFLRVFKYQCMKYLGNLGVISINNVIRAISHVLYDVLEGTIETKLSSIIKFNLY |
|
NCBI Accession
|
YP_764452.1
|
|
Location
|
1207-1614 |
|
Gene Name
|
AC2 |
|
Protein Name
|
AC2 protein |
|
Coding Region
|
ATGCAACATTCGTCACCCTCACGGAGCCATTGTACTCAAGTACCGATCAAGGTCCAACACAAAATCGCGAAGAAGAGACCAGTTCGCAGACGTAGAGTTGATCTCGATTGTGGATGCTCTTACTATTTTGGAATTAACTGCGCATCACATGGATTTTCGCACAGGGGAACTCATCACTGCAACTCAAGCAGAGAATGGCGTATATACCTGGACAATCAACAATCCCCTCTATTTCAAGATAACCCAACACCTAGAGAGACCATTCCTGAGGAACCACGATATCATAACCGTCCAAATACAATTCAATTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAA |
|
Protein Sequence
|
MQHSSPSRSHCTQVPIKVQHKIAKKRPVRRRRVDLDCGCSYYFGINCASHGFSHRGTHHCNSSREWRIYLDNQQSPLFQDNPTPRETIPEEPRYHNRPNTIQLQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI |
|
NCBI Accession
|
YP_764453.1
|
|
Location
|
1520-2602 |
|
Gene Name
|
AC1 |
|
Protein Name
|
AC1 protein |
|
Coding Region
|
ATGCCTCCGCCAAAAAAATTTATAATAAATGCCAAGAACTATTTCCTCACATACCCACACTGCTCGCTTAGCAAAGAAGAAGCACTTTCCCAATTATTAGCCCTATCAACCCCAACCAATAAATTATTCATTCGAATCTGCAGGGAACTACACGAAGATGGGACTCCTCACCTGCATATCCTCATCCAATTCGAAGGAAAGTTCAAATGCCAAAACAACAGATTCTTCGATCTCATATCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGAGCGCTAAGAGCTCAACAGATGTTAAGTCCTACATGGAAAAAGACAGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATATTAAGGGAGAAAGCTCCCAAAGATTTTGTTTTACAATTTCATAATTTAACTAATAATTTGGATAGGATTTTTACACCTCCATTAGAGGTTTATATTTCTCCTTTTTTATCTTCTTCTTTTGATCAAGTTCCAGAAGAACTTGAGGAATGGGTTTCCGAAAATGTCATGAATGCAGCTGCGCGGCCATGGAGACCCAATAGTATTGTCATAGAGGGTGATAGTCGTACAGGGAAGACGACGTGGGCAAGGTCTCTGGGTCTACACAATTATTTGTGTGGCCATCTAGATCTCAGTCCAAAAGTATACAGCAATGATGCTTGGTATAACGTCATTGATGACGTAGATCCCCACTATCTAAAGCATTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACAAAGTATGGAAAGCCAATTCAAATTAAAGGCGGTATCCCGTCAATCTTCCTTTGCAATCCAGGACCAACATCATCATATAAAGAATACTTGGACGAAGAAAAGAACGCAGCACTCAAAAACTGGGCATTAAAAAATGCAACATTCGTCACCCTCACGGAGCCATTGTACTCAAGTACCGATCAAGGTCCAACACAAAATCGCGAAGAAGAGACCAGTTCGCAGACGTAG |
|
Protein Sequence
|
MPPPKKFIINAKNYFLTYPHCSLSKEEALSQLLALSTPTNKLFIRICRELHEDGTPHLHILIQFEGKFKCQNNRFFDLISPTRSTHFHPNIQSAKSSTDVKSYMEKDRDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKAAALNILREKAPKDFVLQFHNLTNNLDRIFTPPLEVYISPFLSSSFDQVPEELEEWVSENVMNAAARPWRPNSIVIEGDSRTGKTTWARSLGLHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPSIFLCNPGPTSSYKEYLDEEKNAALKNWALKNATFVTLTEPLYSSTDQGPTQNREEETSSQT |
|
NCBI Accession
|
YP_764454.1
|
|
Location
|
2152-2445 |
|
Gene Name
|
AC4 |
|
Protein Name
|
AC4 protein |
|
Coding Region
|
ATGGGACTCCTCACCTGCATATCCTCATCCAATTCGAAGGAAAGTTCAAATGCCAAAACAACAGATTCTTCGATCTCATATCCCCAACCAGGTCAACACATTTCCATCCGAACATTCAGAGCGCTAAGAGCTCAACAGATGTTAAGTCCTACATGGAAAAAGACAGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTGCGGCCCTCAATATATTAA |
|
Protein Sequence
|
MGLLTCISSSNSKESSNAKTTDSSISYPQPGQHISIRTFRALRAQQMLSPTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY |