Tomato yellow leaf curl China virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_000862185.1
Release date 2015/2/13
Submitter Yin,Q., Yang,H., Gong,Q., Wang,H., Liu,Y., Hong,Y., Tien,P.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_004044
ACCGGATGGCCGCGCGATTTTTTTTAAAGTGGTCCCCCCCATGTGCGCGTTTGTCCAATAGAAGGCGCTCCTCAAAGCTTATTTATTAAATGGTCCCCTATAAAACGTAGCTCCCAAGTATATACGTTAAACATGTGGGATCCATTGCTTAATGAGTTTCCTGAAACCGTGCACGGTTTTAGGTGCATGTTAGCAATTAAGTATTTGCAGTTAGTCGAAAATACATACTCCCCCGATACATTAGGTTACGATTTAATTCGTGATTTAATTTCAGTTATTCGTGCTAGAGATTATGGCGAAACGTCCCGCCGATATTGTCATTTCCACTCCCGCCTCGAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCCTATACGGGTCGTGTTGCTGCCCCCACTGTCCGCGTCACCAGAAGACAAATGTGGTCAAACAGGCCCATGTACCGGAAGCCCATGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAGGGGTTGTGAAGGCCCATGTAAAGTTCAATCATGTGAGGCCCGTCATGATGTTTCACATACTGGTAAGGTTATTTGTGTATCGGATGTTACTCGTGGTAACGGTATTACTCACCGTGTTGGCAAGAGGTTCTGTGTTAAATCCATTTACGTCATTGGGAAAATATGGATGGACGAAAATATTAAATTTAAGAATCATACAAATACAGTAATGTTTTTTCTTGTTAGAGATCGACGTCCAAGTGGTACTCCTATGGATTTCCAGCAAGTCTTTAATTGTTATGACAATGAACCTAGCACTGCTACTGTAAAAAACGATTTAAGGGATCGTTTTCAAGTTCGTCGTAAATTTTATTCAACGGTTACGGGCGGACAGTATGCTTGTAAGGAGCAGGCGTTGGTGAAGAGATTTATCCGTCTTAATACTCATGTTGTTTACAACCATCAAGAACAGGCGAAGTACGAGAATCATACGGAGAATGCATTATTGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGTATATGCGACGTTGAAAGTGCGCATCTATTTCTATGATTCACAAATGAATTAATAAATATTGAATTTTATATCATGTTTTTCAATTACATCTATTGTTCCATTCAGTACATCATATAATACATGACTAAAAGCCCTAATACAATTGTTAATGCTAATCACTCCCAACCTATCTAAATATTTAATAAATTGGTATTTAAATACTCTTAAGAAATGCGAGGTCTGAGGATGTAAACGAGTCCAGATTTGGCAGGTTAGAAAACATTTGTGTATCCCCAACGCTTTCCTCAGGTTGTAGTTGAATTGGACTTGTATTGTGATTATGTCGTGGTTCCTCAGAAATGGTCTCTCGTGGTGTTTGGTTATCTTGAAATACAGGGGATTTTTGACCGTCCAGATATACACGCCATTCTCTGATTGAGCTGCAGTGAGTAGTTCCCCTGTGCGTGAATCCATGATTGTGACAGCCTAAAGCAACGAAGTAAGAACAACCACAAGGTAGATCAACCCGTCGTCGTCTGGTTGTCTTCTTGGCGATTCGGTGTTGCACCTTGATAGGAACCTGAGTAGAGTGGCCCGTTGAGGGAGACGAAGATCGCATTCTTTACAGCCCAGTTTCGAAGTGCTGAGTTCTTTTCTTCTTCCAGATACTCTTTATAGCTGGAATTGGGTCCTGGATTGCAGAGGAAGATAGTGGGGATCCCGCCTTTAATTTGAACTGGTTTCCCGTACTTGGTGTTGCTTTGCCAGTCCCTTTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATCTACGTCATCAATGACGTTGAACCAAGCATCATTACTGTACACCTTTGGACTCAGATCCAAATGACCACACAAGTAATTATGTGGTCCTAATGACCTGGCCCACATCGTCTTCCCCGTTCTACTATCACCCTCTATCACTATACTTACCGGTCTTAAAGGCCGCGCAGCGGCACTCACAACATTATCGACCGCCCACTCATCAAGTTCTTCGGGAACTTGGTCAAATGAAGAAGAAGAAAAAGGAGAAATATATTCCACTATTGGAGGAGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAACTGTAAAACAAAATCTTTAGGAGCCTTTTCCCTCAGTATATTGAGGGCCGAAGCTTTGGACCCTGAATTGATTGCCTCGGCATATGCGTCGTTGGCAGATTGGCAACCTCCTCTAGCCGATCTTCCATCGATCTGGAAAACTCCATGATCAAGCACGTCTCCGTCTTTTTCCATGTAGGATTTGACATCTGTTGAGCTTTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGTGTGGGGATGTGAGATCGAAGAATCTTTGATTCTTACACTGGAACTTTCCTTCGAATTGGATGAGAACATGCAAGTGAGGAGACCCATCTTCGTGTAATTCTCTACAGATTCTGATAAATAGTTTATTTACTGGGGTTTCTAGGGTTTTAATTTGGGAAAGTGCCTCTTCCTTAGTGAGAGAGCAGTGTGGATATGTGAGGAAATAATTTTTGGCATTTATTCTGAATTTATTTGGGGGAGCCATTGACTGGTCAATCGGTGTCTCTCAAACTTGGCTATGCAAATGGTGTCTGGGGTCTTATTTATATGTGGACACCAAATGGCATTATCGTAATTCCCAAAAGAAATTCAAAATTCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession NP_660164.1
Location 133-480
Gene Name AV1
Protein Name AV1 protein
Coding Region ATGTGGGATCCATTGCTTAATGAGTTTCCTGAAACCGTGCACGGTTTTAGGTGCATGTTAGCAATTAAGTATTTGCAGTTAGTCGAAAATACATACTCCCCCGATACATTAGGTTACGATTTAATTCGTGATTTAATTTCAGTTATTCGTGCTAGAGATTATGGCGAAACGTCCCGCCGATATTGTCATTTCCACTCCCGCCTCGAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCCTATACGGGTCGTGTTGCTGCCCCCACTGTCCGCGTCACCAGAAGACAAATGTGGTCAAACAGGCCCATGTACCGGAAGCCCATGATGTACCGGATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPETVHGFRCMLAIKYLQLVENTYSPDTLGYDLIRDLISVIRARDYGETSRRYCHFHSRLEGASPAELRQPLYGSCCCPHCPRHQKTNVVKQAHVPEAHDVPDVQKP

NCBI Accession NP_660165.1
Location 293-1063
Gene Name AV2
Protein Name coat protein
Coding Region ATGGCGAAACGTCCCGCCGATATTGTCATTTCCACTCCCGCCTCGAAGGTGCGTCGCCGGCTGAACTTCGACAGCCCCTATACGGGTCGTGTTGCTGCCCCCACTGTCCGCGTCACCAGAAGACAAATGTGGTCAAACAGGCCCATGTACCGGAAGCCCATGATGTACCGGATGTACAGAAGCCCTGATGTTCCAAGGGGTTGTGAAGGCCCATGTAAAGTTCAATCATGTGAGGCCCGTCATGATGTTTCACATACTGGTAAGGTTATTTGTGTATCGGATGTTACTCGTGGTAACGGTATTACTCACCGTGTTGGCAAGAGGTTCTGTGTTAAATCCATTTACGTCATTGGGAAAATATGGATGGACGAAAATATTAAATTTAAGAATCATACAAATACAGTAATGTTTTTTCTTGTTAGAGATCGACGTCCAAGTGGTACTCCTATGGATTTCCAGCAAGTCTTTAATTGTTATGACAATGAACCTAGCACTGCTACTGTAAAAAACGATTTAAGGGATCGTTTTCAAGTTCGTCGTAAATTTTATTCAACGGTTACGGGCGGACAGTATGCTTGTAAGGAGCAGGCGTTGGTGAAGAGATTTATCCGTCTTAATACTCATGTTGTTTACAACCATCAAGAACAGGCGAAGTACGAGAATCATACGGAGAATGCATTATTGTTGTACATGGCGTGTACTCATGCCTCTAATCCTGTATATGCGACGTTGAAAGTGCGCATCTATTTCTATGATTCACAAATGAATTAA
Protein Sequence MAKRPADIVISTPASKVRRRLNFDSPYTGRVAAPTVRVTRRQMWSNRPMYRKPMMYRMYRSPDVPRGCEGPCKVQSCEARHDVSHTGKVICVSDVTRGNGITHRVGKRFCVKSIYVIGKIWMDENIKFKNHTNTVMFFLVRDRRPSGTPMDFQQVFNCYDNEPSTATVKNDLRDRFQVRRKFYSTVTGGQYACKEQALVKRFIRLNTHVVYNHQEQAKYENHTENALLLYMACTHASNPVYATLKVRIYFYDSQMN

NCBI Accession NP_660166.1
Location 1060-1464
Gene Name AC3
Protein Name AC3 protein
Coding Region ATGGATTCACGCACAGGGGAACTACTCACTGCAGCTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTGTATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAACCACGACATAATCACAATACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAAATACCAATTTATTAAATATTTAGATAGGTTGGGAGTGATTAGCATTAACAATTGTATTAGGGCTTTTAGTCATGTATTATATGATGTACTGAATGGAACAATAGATGTAATTGAAAAACATGATATAAAATTCAATATTTATTAA
Protein Sequence MDSRTGELLTAAQSENGVYIWTVKNPLYFKITKHHERPFLRNHDIITIQVQFNYNLRKALGIHKCFLTCQIWTRLHPQTSHFLRVFKYQFIKYLDRLGVISINNCIRAFSHVLYDVLNGTIDVIEKHDIKFNIY

NCBI Accession NP_660167.1
Location 1205-1609
Gene Name AC2
Protein Name AC2 protein
Coding Region ATGCGATCTTCGTCTCCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGAATCGCCAAGAAGACAACCAGACGACGACGGGTTGATCTACCTTGTGGTTGTTCTTACTTCGTTGCTTTAGGCTGTCACAATCATGGATTCACGCACAGGGGAACTACTCACTGCAGCTCAATCAGAGAATGGCGTGTATATCTGGACGGTCAAAAATCCCCTGTATTTCAAGATAACCAAACACCACGAGAGACCATTTCTGAGGAACCACGACATAATCACAATACAAGTCCAATTCAACTACAACCTGAGGAAAGCGTTGGGGATACACAAATGTTTTCTAACCTGCCAAATCTGGACTCGTTTACATCCTCAGACCTCGCATTTCTTAAGAGTATTTAA
Protein Sequence MRSSSPSTGHSTQVPIKVQHRIAKKTTRRRRVDLPCGCSYFVALGCHNHGFTHRGTTHCSSIREWRVYLDGQKSPVFQDNQTPRETISEEPRHNHNTSPIQLQPEESVGDTQMFSNLPNLDSFTSSDLAFLKSI

NCBI Accession NP_660168.1
Location 1512-2597
Gene Name AC1
Protein Name AC1 protein
Coding Region ATGGCTCCCCCAAATAAATTCAGAATAAATGCCAAAAATTATTTCCTCACATATCCACACTGCTCTCTCACTAAGGAAGAGGCACTTTCCCAAATTAAAACCCTAGAAACCCCAGTAAATAAACTATTTATCAGAATCTGTAGAGAATTACACGAAGATGGGTCTCCTCACTTGCATGTTCTCATCCAATTCGAAGGAAAGTTCCAGTGTAAGAATCAAAGATTCTTCGATCTCACATCCCCACACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAATCCTACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTGAGGGAAAAGGCTCCTAAAGATTTTGTTTTACAGTTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACTCCTCCAATAGTGGAATATATTTCTCCTTTTTCTTCTTCTTCATTTGACCAAGTTCCCGAAGAACTTGATGAGTGGGCGGTCGATAATGTTGTGAGTGCCGCTGCGCGGCCTTTAAGACCGGTAAGTATAGTGATAGAGGGTGATAGTAGAACGGGGAAGACGATGTGGGCCAGGTCATTAGGACCACATAATTACTTGTGTGGTCATTTGGATCTGAGTCCAAAGGTGTACAGTAATGATGCTTGGTTCAACGTCATTGATGACGTAGATCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAAAGGGACTGGCAAAGCAACACCAAGTACGGGAAACCAGTTCAAATTAAAGGCGGGATCCCCACTATCTTCCTCTGCAATCCAGGACCCAATTCCAGCTATAAAGAGTATCTGGAAGAAGAAAAGAACTCAGCACTTCGAAACTGGGCTGTAAAGAATGCGATCTTCGTCTCCCTCAACGGGCCACTCTACTCAGGTTCCTATCAAGGTGCAACACCGAATCGCCAAGAAGACAACCAGACGACGACGGGTTGA
Protein Sequence MAPPNKFRINAKNYFLTYPHCSLTKEEALSQIKTLETPVNKLFIRICRELHEDGSPHLHVLIQFEGKFQCKNQRFFDLTSPHRSAHFHPNIQGAKSSTDVKSYMEKDGDVLDHGVFQIDGRSARGGCQSANDAYAEAINSGSKASALNILREKAPKDFVLQFHNLNSNLDRIFTPPIVEYISPFSSSSFDQVPEELDEWAVDNVVSAAARPLRPVSIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWFNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLEEEKNSALRNWAVKNAIFVSLNGPLYSGSYQGATPNRQEDNQTTTG

NCBI Accession NP_660169.1
Location 2147-2440
Gene Name AC4
Protein Name AC4 protein
Coding Region ATGGGTCTCCTCACTTGCATGTTCTCATCCAATTCGAAGGAAAGTTCCAGTGTAAGAATCAAAGATTCTTCGATCTCACATCCCCACACAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAAAGCTCAACAGATGTCAAATCCTACATGGAAAAAGACGGAGACGTGCTTGATCATGGAGTTTTCCAGATCGATGGAAGATCGGCTAGAGGAGGTTGCCAATCTGCCAACGACGCATATGCCGAGGCAATCAATTCAGGGTCCAAAGCTTCGGCCCTCAATATACTGA
Protein Sequence MGLLTCMFSSNSKESSSVRIKDSSISHPHTGQHISIRTFRELKAQQMSNPTWKKTETCLIMEFSRSMEDRLEEVANLPTTHMPRQSIQGPKLRPSIY