Tomato mottle leaf curl virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_001891035.1 |
Isolate |
Brazil |
Release date |
2016/12/8 |
Submitter |
Ferro,M.M.M., Ramos-Sobrinho,R., Silva,J.T., Assuncao,I.P., Lima,G.S.A. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGTGGGTTTTTTTTGACCCGCTCCGTGAATCATTTCTTTGTAATTTACTGTGTGGTCCAGTCACTAAATGACAAATATGACCGTCCAATCAGAAGTGGTCCTGAAAGCCTAATTATTTAAAAATACTTGGTCACTAAGTTTGGTAATCTTTATAAATGGTCCCTCCTTGTATGGTTATACCATCTTTAATTCATAATGCCTAAGCGTGATGCCCCATGGCGCTCAATGGCGGGTACCTCGAAGGTTAGTCGGTCCGCCAATTACTCCCCTCGTGGAGGAATTGGGTCAAAGTCAGACAAGGCCCAGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATATATCGGATGTATAGAACCCCCGATGTACCAAAGGGATGCGAAGGCCCATGTAAGGTCCAATCTTATGAGCAGCGTCACGATGTCTCTCATACTGGGAAGGTGATGTGTATTTCCGACGTCACTCGTGGTAACGGTATTACCCACCGTGTGGGTAAACGTTTTTGTGTCAAGTCTGTGTATATATTAGGCAAGGTCTGGATGGATGACAACATCAAGTTGAAGAACCACACGAATAGTGTGATGTTCTGGTTAGTTAGGGATAGGAGACCGTATGGTACGCCCATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCCACGGTGAAGAACGATCTTCGCGATCGTTACCAGGTCCTGCACAGGTTCTATGCCAAGGTTACCGGTGGACAATACGCCAGCAACGAGCAGGCTATTGTCAAGAGGTTCTGGAAGGTCAGCAACCATGTGGTGTACAACCATCAGGAGGCAGGGAAATACGAGAACCATACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACCTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAATAAAGTTTAAATTTTATTGAATGATCTTCGAGTACATAATTTACATACGGTTTGTCTGTTGCGAACTGAACAGCTCTAATTACATTATTAATAGAAATGACCCCTAAACGATCTAAATACATATTAACTAAATCACTAAACCTATTTAAATAAGTCGTCCCAGAAGCTGTCGTTGACGTCGTCCAGATTTGGAAGTTGAGGAAGCACTTGTGGAGATCCAACGCTCTCCTCAGGTTGTGGTTGAACCGTATCTGAATGTGGTAGATCCTTGTGTTCGTGTGTATCGGGTTCTCTACGTTTGTTATCTTGAAATAGAGGGGATTTTGGACCTCCCAGATAAACGCGCCATTCTGTGCCTGATGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCATTGCCGACGCAGTCGATGTGTTGGTATATGGTGCAGCCACAGTTTAGGTCTATGCGCTTGCGTCGAATGACCCTCTTTTTAGCTATCCTGTGCTGTCGTTTTATAGAGGGGGGTGTCGAGGAAGATGAATTTTGCATTGTGCAGTGTCCAGTTTTGGAGGGATGTGTTTTCCTCTTTGTCGAGAAAATCTTTATAGCTGGCCCCCTCTCCTGGATTGCAGAGCACGATTGATGGAATGCCCCCTTTAATTTGAACTGGCTTTCCGTATTTGCAGTTTGATTGCCAGTCCCGTTGGGCCCCAATGAGCTCTTTCCAATGCTTCATCTTTAGATATTGCGGTGTGACGTCATCAATGACGTTGTACTCCGCTTCGTTTGAGTAAACCCTAGAATTAAAATCAAGGTGTCCACTTAAATAGTTATGTGGGCCTAATACACGCGCCCACATCGTCTTCCCCGTCCTTGAGTCACCCTCGATGATTATACTAATAGGTCTCTCCGGCCGCGCAGCGGGATCCCTACCAAAATAATCATCAGCCCACTCTTGCATCTCATCCGGAACCTCTGTAAAGGAGGAGAGGGGAAACGGAGGAACCCATGGTTCCGGAGCCTTCTGAAAAATACGTTCTAAATTAGAACGTATGTTGTGTTGTTGAAGGACGAAGTCTTTCGGTTGCTCCTCCCTTAATATATTGAGGGCCTCCATGACGGATCCTGCGTTGAGGACCTTGGCATACGTGTCGTTGGCAGATTGCTGACCTCCTCGAGCTGATCTGCCGTCGATCTGGAAAACTCCATGATCAATGAAGTCTCCGTCTTTCTCCATATAGGTTTTGACGTCAGATGAGGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGTTGATCTGGTTGGGGATACCATGTCGAAGAATCTACAGTTTGTGCATCTGTATTTTCCTTCGAATTGGATGAGCACGTGGAGATGAGGTTCCCCATCTTCGTGGAGTTCTCGAGTTATTCGGATGAACTTTATGTTGGTAGGTGTTTTTAGAGCTAACAATTGGGAAAGTGCTTCTTCCTTGGATAAAGAGCAATGTGGATATGTTATAAAATAATTCTTAGAATTAATAAGAAATTTTTTGGGGAGTGGCATTTTTGTAATAAGATGTTGATCACCGATTGGGGTCTGTCTAAAACTCTACTGCAATCGGTGATTTGGGTACACTTATATACTAGAAGCCTCTATAGAACTATTAATCCTCATCGCACACGTGGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_009325934.1
|
Location
|
208-963 |
Gene Name
|
CP |
Protein Name
|
Coat protein |
Coding Region
|
ATGCCTAAGCGTGATGCCCCATGGCGCTCAATGGCGGGTACCTCGAAGGTTAGTCGGTCCGCCAATTACTCCCCTCGTGGAGGAATTGGGTCAAAGTCAGACAAGGCCCAGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAATATATCGGATGTATAGAACCCCCGATGTACCAAAGGGATGCGAAGGCCCATGTAAGGTCCAATCTTATGAGCAGCGTCACGATGTCTCTCATACTGGGAAGGTGATGTGTATTTCCGACGTCACTCGTGGTAACGGTATTACCCACCGTGTGGGTAAACGTTTTTGTGTCAAGTCTGTGTATATATTAGGCAAGGTCTGGATGGATGACAACATCAAGTTGAAGAACCACACGAATAGTGTGATGTTCTGGTTAGTTAGGGATAGGAGACCGTATGGTACGCCCATGGATTTTGGCCAGGTGTTCAACATGTTTGACAACGAGCCCAGTACTGCCACGGTGAAGAACGATCTTCGCGATCGTTACCAGGTCCTGCACAGGTTCTATGCCAAGGTTACCGGTGGACAATACGCCAGCAACGAGCAGGCTATTGTCAAGAGGTTCTGGAAGGTCAGCAACCATGTGGTGTACAACCATCAGGAGGCAGGGAAATACGAGAACCATACGGAGAACGCCCTCTTATTGTATATGGCATGTACTCATGCCTCTAACCCCGTGTATGCTACCTTAAAAATTCGGATCTATTTTTATGATTCGATAACAAATTAA |
Protein Sequence
|
MPKRDAPWRSMAGTSKVSRSANYSPRGGIGSKSDKAQAWVNRPMYRKPRIYRMYRTPDVPKGCEGPCKVQSYEQRHDVSHTGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKVWMDDNIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLHRFYAKVTGGQYASNEQAIVKRFWKVSNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN |
NCBI Accession
|
YP_009325935.1
|
Location
|
960-1358 |
Gene Name
|
REN |
Protein Name
|
Replication-enhancer protein |
Coding Region
|
ATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCACAGAATGGCGCGTTTATCTGGGAGGTCCAAAATCCCCTCTATTTCAAGATAACAAACGTAGAGAACCCGATACACACGAACACAAGGATCTACCACATTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGTGCTTCCTCAACTTCCAAATCTGGACGACGTCAACGACAGCTTCTGGGACGACTTATTTAAATAGGTTTAGTGATTTAGTTAATATGTATTTAGATCGTTTAGGGGTCATTTCTATTAATAATGTAATTAGAGCTGTTCAGTTCGCAACAGACAAACCGTATGTAAATTATGTACTCGAAGATCATTCAATAAAATTTAAACTTTATTAA |
Protein Sequence
|
MDSRTGELITAHQAQNGAFIWEVQNPLYFKITNVENPIHTNTRIYHIQIRFNHNLRRALDLHKCFLNFQIWTTSTTASGTTYLNRFSDLVNMYLDRLGVISINNVIRAVQFATDKPYVNYVLEDHSIKFKLY |
NCBI Accession
|
YP_009325936.1
|
Location
|
1105-1494 |
Gene Name
|
TRAP |
Protein Name
|
Transactivating protein |
Coding Region
|
ATGCAAAATTCATCTTCCTCGACACCCCCCTCTATAAAACGACAGCACAGGATAGCTAAAAAGAGGGTCATTCGACGCAAGCGCATAGACCTAAACTGTGGCTGCACCATATACCAACACATCGACTGCGTCGGCAATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCACAGAATGGCGCGTTTATCTGGGAGGTCCAAAATCCCCTCTATTTCAAGATAACAAACGTAGAGAACCCGATACACACGAACACAAGGATCTACCACATTCAGATACGGTTCAACCACAACCTGAGGAGAGCGTTGGATCTCCACAAGTGCTTCCTCAACTTCCAAATCTGGACGACGTCAACGACAGCTTCTGGGACGACTTATTTAAATAG |
Protein Sequence
|
MQNSSSSTPPSIKRQHRIAKKRVIRRKRIDLNCGCTIYQHIDCVGNGFTHRGTHHCTSGTEWRVYLGGPKSPLFQDNKRREPDTHEHKDLPHSDTVQPQPEESVGSPQVLPQLPNLDDVNDSFWDDLFK |
NCBI Accession
|
YP_009325937.1
|
Location
|
1436-2491 |
Gene Name
|
REP |
Protein Name
|
Replication-associated protein |
Coding Region
|
ATGCCACTCCCCAAAAAATTTCTTATTAATTCTAAGAATTATTTTATAACATATCCACATTGCTCTTTATCCAAGGAAGAAGCACTTTCCCAATTGTTAGCTCTAAAAACACCTACCAACATAAAGTTCATCCGAATAACTCGAGAACTCCACGAAGATGGGGAACCTCATCTCCACGTGCTCATCCAATTCGAAGGAAAATACAGATGCACAAACTGTAGATTCTTCGACATGGTATCCCCAACCAGATCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCTCATCTGACGTCAAAACCTATATGGAGAAAGACGGAGACTTCATTGATCATGGAGTTTTCCAGATCGACGGCAGATCAGCTCGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTCCTCAACGCAGGATCCGTCATGGAGGCCCTCAATATATTAAGGGAGGAGCAACCGAAAGACTTCGTCCTTCAACAACACAACATACGTTCTAATTTAGAACGTATTTTTCAGAAGGCTCCGGAACCATGGGTTCCTCCGTTTCCCCTCTCCTCCTTTACAGAGGTTCCGGATGAGATGCAAGAGTGGGCTGATGATTATTTTGGTAGGGATCCCGCTGCGCGGCCGGAGAGACCTATTAGTATAATCATCGAGGGTGACTCAAGGACGGGGAAGACGATGTGGGCGCGTGTATTAGGCCCACATAACTATTTAAGTGGACACCTTGATTTTAATTCTAGGGTTTACTCAAACGAAGCGGAGTACAACGTCATTGATGACGTCACACCGCAATATCTAAAGATGAAGCATTGGAAAGAGCTCATTGGGGCCCAACGGGACTGGCAATCAAACTGCAAATACGGAAAGCCAGTTCAAATTAAAGGGGGCATTCCATCAATCGTGCTCTGCAATCCAGGAGAGGGGGCCAGCTATAAAGATTTTCTCGACAAAGAGGAAAACACATCCCTCCAAAACTGGACACTGCACAATGCAAAATTCATCTTCCTCGACACCCCCCTCTATAAAACGACAGCACAGGATAGCTAA |
Protein Sequence
|
MPLPKKFLINSKNYFITYPHCSLSKEEALSQLLALKTPTNIKFIRITRELHEDGEPHLHVLIQFEGKYRCTNCRFFDMVSPTRSTHFHPNVQGAKSSSDVKTYMEKDGDFIDHGVFQIDGRSARGGQQSANDTYAKVLNAGSVMEALNILREEQPKDFVLQQHNIRSNLERIFQKAPEPWVPPFPLSSFTEVPDEMQEWADDYFGRDPAARPERPISIIIEGDSRTGKTMWARVLGPHNYLSGHLDFNSRVYSNEAEYNVIDDVTPQYLKMKHWKELIGAQRDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLDKEENTSLQNWTLHNAKFIFLDTPLYKTTAQDS |
NCBI Accession
|
YP_009325938.1
|
Location
|
2041-2334 |
Gene Name
|
AC4 |
Protein Name
|
AC4 protein |
Coding Region
|
ATGGGGAACCTCATCTCCACGTGCTCATCCAATTCGAAGGAAAATACAGATGCACAAACTGTAGATTCTTCGACATGGTATCCCCAACCAGATCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCTCATCTGACGTCAAAACCTATATGGAGAAAGACGGAGACTTCATTGATCATGGAGTTTTCCAGATCGACGGCAGATCAGCTCGAGGAGGTCAGCAATCTGCCAACGACACGTATGCCAAGGTCCTCAACGCAGGATCCGTCATGGAGGCCCTCAATATATTAA |
Protein Sequence
|
MGNLISTCSSNSKENTDAQTVDSSTWYPQPDQHISIRTFRELNPHLTSKPIWRKTETSLIMEFSRSTADQLEEVSNLPTTRMPRSSTQDPSWRPSIY |