Tomato leaf distortion virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002824485.1
Isolate Brazil
Release date 2018/8/25
Submitter Castillo-Urquiza,G.P., Beserra,J.E. Jr., Bruckner,F.P., Lima,A.T., Varsani,A., Alfenas-Zerbini,P., Murilo Zerbini,F., Beserra,J.E.A. Jr., Lima,A.T.M., Zerbini,P.A., Zerbini,F.M.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038474
ACCGGATGGCCGCGCGATTTTTTGCCCCCCGCACGTGGCGCTTTTGTGGCCGCTGGATATTTTTCTCCCGCGCGCTGTACTCTTTAATTCTAATTAAAGGTATAACTTTAGTTTCCACCAATGATAGTGCGCCTGGGAAGTCTAGATATGTGCGCGATACTTGGGGCCGAAGTTGTTGATCAACGGCTATAAATTAAAAGAAGACTGACCACAGTCTTTAATTCATAATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACTTCGAAGGTTAGCCGCTCTTCCAATTTCTCCCCCCGTGGAGGTGGAGGCCCAAAGTTCAACAAGGCCTCGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGCTGAGAACGCCTGATGTCCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAGCGTCACGACATCTCACATGTCGGTAAGGTGATGTGCATTTCTGATGTGACACGTGGTAATGGTATTACCCACCGTGTCGGTAAGCGTTTCTGCGTTAAGTCTGTGTACATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAATAGTGTCATGTTCTGGTTGGTCAGAGATCGTAGACCGTATGGTACTCCTATGGACTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGCACTGCTACGGTGAAGAACGATCTCCGTGATCGTTATCAAGTTATGCACAAGTTCTACGCCAAAGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTATGAGAATCACACGGAGAATGCTTTGTTACTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTAAAGATTCGAATTTATTTTTACGATTCGATCACCAATTAATAAAATTTGAATTTTATTGAATGATTTTCTAGTACATGATTTACATATGATTTGTCTGTTGCGAATCGAACAGCTCTAATTACATTATTAAGTGCAATTACACCTAATTGTTCTAAGTACATCATTACTAAGTGCCTAAACCTACTTAAATAAGTCATCCCAGAAGCTCTCATCGATGTCGTCCAGACTTGGAAGTTCAGGAATGCCTTGTGGAGACCCAACGCTTTCCTGAGGTTGTGGTTGAACCGTATCTGGATGTGATACACTCTGGTCCTTGTGAACGGGATGTCTTCTACTCGGTGCATCTTGAAATACAGGGGATTTGTTATCTCCCAGATATAGACGCCATTCTCTGCCTGATGTGCAGTGATGAGTTCCCCGGTGCGTGAATCCATGACCTATGCAGTTTATATGGACGTATATGGAGCAGCCGCACTCGATATCAATCCGTCGCCGCCGGATTGCTCTCTTCTTCGCAATCCTGTGTTGCTGTTTGATAGAGGGGGGAGTCGAGGAAGATGAATTTAGCATTGTATAGTGTCCACGACTTCAGGGATGCATTTTCCTCTTTCTCCAGGAAATCTTTATAGCTGGCCCCCTCGCCAGGATTGCAAAGCACGATTGAAGGAATTCCACCTTTAATTTGAACTGGCTTGCCGTACTTACAATTTGACTGCCAGTCTTTTTGAGCACCAATCAATTCCTTCCAGTGCTTTAACTTTAAATAATGCGGGGTGACATCATCGATGACGTTATACTCAACGTCATTTGAGTAAACCCTAGAATTGAAGTCCAGGTGTCCACTCAGATAATTGTGAGACCCCAAAGCTCTGGCCCACATCGTCTTCCCCGTTCGACTATCACCTTGGACGATTATACTCATGGGTCTCACTGGCCGCGCAGCGGCTCCTCTTCCAAAATACTCATCGGCCCATTCCTGCATCTCGTCAGGAACGTTAGTGAAGGATGAGAGGGGAAACGGAGGAACCCAAGGATCCGGAGCCTTTTTGAATATTCTATCCAGGTTACTGGATAGGTTATGGTATTGGAAGAGGAATTTTTCCGGCAGCTTTTCCTTGATAATCATCATCGCCTCTTCCTTTGATGATGCATTCAACGCCTCAGCTGCAGCGTCGTTAGACGTTTGCTGACCTCCTCTAGCACTTCTGCCGTCGACTTGGAATTCTCCCCATTCGATAGTATCACCGTCCTTATCGATGTAGGACTTGACGTCGGACGATGATTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGATGGGGATACCAAGTCGAAGAATCTGTTATTTGTGCACTGGTATTTCCCTTCGAACTGTATAAGCACGTGTAGATGAGGTTCCCCATTCTCATGCAGTTCTCTGCAGATTTTGATATACTTCTTGTTGGTTGGGGTGTTAAGGAGTTTAAGTTGGGCAAGTGCTTCTTCTTTGGTCAGAGAACAATGAGGGTATGTGACAAAATAGTTTTTGGAAGATATTTTAAACCGCTTTGGGGGTGGCATATTTGTAAATATAGCCTTGTACCCCAATTGCTCCGGCTCTCAAAACTCTATATGAATTGGGGTAATGGGGTACAATATATAGTAAGGAGTTCCATAAGCTCCTAGGGGCACGTGGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009506553.1
Location 228-983
Gene Name CP
Protein Name coat protein
Coding Region ATGCCTAAGCGGGATGCCCCGTGGCGCCTGATGGCGGGAACTTCGAAGGTTAGCCGCTCTTCCAATTTCTCCCCCCGTGGAGGTGGAGGCCCAAAGTTCAACAAGGCCTCGGAATGGGTTAACAGGCCCATGTACAGGAAGCCCAGGATATATCGGACGCTGAGAACGCCTGATGTCCCTAGAGGCTGTGAAGGGCCCTGTAAGGTCCAGTCCTACGAGCAGCGTCACGACATCTCACATGTCGGTAAGGTGATGTGCATTTCTGATGTGACACGTGGTAATGGTATTACCCACCGTGTCGGTAAGCGTTTCTGCGTTAAGTCTGTGTACATTTTAGGTAAGATATGGATGGACGAGAACATCAAGCTGAAGAACCACACGAATAGTGTCATGTTCTGGTTGGTCAGAGATCGTAGACCGTATGGTACTCCTATGGACTTTGGCCAGGTGTTCAATATGTTTGACAACGAGCCCAGCACTGCTACGGTGAAGAACGATCTCCGTGATCGTTATCAAGTTATGCACAAGTTCTACGCCAAAGTCACTGGTGGTCAATATGCCAGCAATGAACAGGCTCTGGTCAAGAGGTTCTGGAAGGTCAACAATCATGTGGTGTACAACCACCAGGAAGCTGGCAAGTATGAGAATCACACGGAGAATGCTTTGTTACTGTATATGGCATGTACTCATGCCTCTAACCCTGTGTATGCAACGCTAAAGATTCGAATTTATTTTTACGATTCGATCACCAATTAA
Protein Sequence MPKRDAPWRLMAGTSKVSRSSNFSPRGGGGPKFNKASEWVNRPMYRKPRIYRTLRTPDVPRGCEGPCKVQSYEQRHDISHVGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYGTPMDFGQVFNMFDNEPSTATVKNDLRDRYQVMHKFYAKVTGGQYASNEQALVKRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSITN

NCBI Accession YP_009506554.1
Location 980-1378
Gene Name Ren
Protein Name replication enhancer protein
Coding Region ATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGCACCGAGTAGAAGACATCCCGTTCACAAGGACCAGAGTGTATCACATCCAGATACGGTTCAACCACAACCTCAGGAAAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCGATGAGAGCTTCTGGGATGACTTATTTAAGTAGGTTTAGGCACTTAGTAATGATGTACTTAGAACAATTAGGTGTAATTGCACTTAATAATGTAATTAGAGCTGTTCGATTCGCAACAGACAAATCATATGTAAATCATGTACTAGAAAATCATTCAATAAAATTCAAATTTTATTAA
Protein Sequence MDSRTGELITAHQAENGVYIWEITNPLYFKMHRVEDIPFTRTRVYHIQIRFNHNLRKALGLHKAFLNFQVWTTSMRASGMTYLSRFRHLVMMYLEQLGVIALNNVIRAVRFATDKSYVNHVLENHSIKFKFY

NCBI Accession YP_009506555.1
Location 1125-1514
Gene Name Trap
Protein Name trans-activating protein
Coding Region ATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACAGCAACACAGGATTGCGAAGAAGAGAGCAATCCGGCGGCGACGGATTGATATCGAGTGCGGCTGCTCCATATACGTCCATATAAACTGCATAGGTCATGGATTCACGCACCGGGGAACTCATCACTGCACATCAGGCAGAGAATGGCGTCTATATCTGGGAGATAACAAATCCCCTGTATTTCAAGATGCACCGAGTAGAAGACATCCCGTTCACAAGGACCAGAGTGTATCACATCCAGATACGGTTCAACCACAACCTCAGGAAAGCGTTGGGTCTCCACAAGGCATTCCTGAACTTCCAAGTCTGGACGACATCGATGAGAGCTTCTGGGATGACTTATTTAAGTAG
Protein Sequence MLNSSSSTPPSIKQQHRIAKKRAIRRRRIDIECGCSIYVHINCIGHGFTHRGTHHCTSGREWRLYLGDNKSPVFQDAPSRRHPVHKDQSVSHPDTVQPQPQESVGSPQGIPELPSLDDIDESFWDDLFK

NCBI Accession YP_009506556.1
Location 1426-2511
Gene Name Rep
Protein Name replication-associated protein
Coding Region ATGCCACCCCCAAAGCGGTTTAAAATATCTTCCAAAAACTATTTTGTCACATACCCTCATTGTTCTCTGACCAAAGAAGAAGCACTTGCCCAACTTAAACTCCTTAACACCCCAACCAACAAGAAGTATATCAAAATCTGCAGAGAACTGCATGAGAATGGGGAACCTCATCTACACGTGCTTATACAGTTCGAAGGGAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGATAAGGACGGTGATACTATCGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGTCAGCAAACGTCTAACGACGCTGCAGCTGAGGCGTTGAATGCATCATCAAAGGAAGAGGCGATGATGATTATCAAGGAAAAGCTGCCGGAAAAATTCCTCTTCCAATACCATAACCTATCCAGTAACCTGGATAGAATATTCAAAAAGGCTCCGGATCCTTGGGTTCCTCCGTTTCCCCTCTCATCCTTCACTAACGTTCCTGACGAGATGCAGGAATGGGCCGATGAGTATTTTGGAAGAGGAGCCGCTGCGCGGCCAGTGAGACCCATGAGTATAATCGTCCAAGGTGATAGTCGAACGGGGAAGACGATGTGGGCCAGAGCTTTGGGGTCTCACAATTATCTGAGTGGACACCTGGACTTCAATTCTAGGGTTTACTCAAATGACGTTGAGTATAACGTCATCGATGATGTCACCCCGCATTATTTAAAGTTAAAGCACTGGAAGGAATTGATTGGTGCTCAAAAAGACTGGCAGTCAAATTGTAAGTACGGCAAGCCAGTTCAAATTAAAGGTGGAATTCCTTCAATCGTGCTTTGCAATCCTGGCGAGGGGGCCAGCTATAAAGATTTCCTGGAGAAAGAGGAAAATGCATCCCTGAAGTCGTGGACACTATACAATGCTAAATTCATCTTCCTCGACTCCCCCCTCTATCAAACAGCAACACAGGATTGCGAAGAAGAGAGCAATCCGGCGGCGACGGATTGA
Protein Sequence MPPPKRFKISSKNYFVTYPHCSLTKEEALAQLKLLNTPTNKKYIKICRELHENGEPHLHVLIQFEGKYQCTNNRFFDLVSPSRSAHFHPNIQGAKSSSDVKSYIDKDGDTIEWGEFQVDGRSARGGQQTSNDAAAEALNASSKEEAMMIIKEKLPEKFLFQYHNLSSNLDRIFKKAPDPWVPPFPLSSFTNVPDEMQEWADEYFGRGAAARPVRPMSIIVQGDSRTGKTMWARALGSHNYLSGHLDFNSRVYSNDVEYNVIDDVTPHYLKLKHWKELIGAQKDWQSNCKYGKPVQIKGGIPSIVLCNPGEGASYKDFLEKEENASLKSWTLYNAKFIFLDSPLYQTATQDCEEESNPAATD

NCBI Accession YP_009506557.1
Location 2097-2360
Gene Name AC4
Protein Name AC4
Coding Region ATGAGAATGGGGAACCTCATCTACACGTGCTTATACAGTTCGAAGGGAAATACCAGTGCACAAATAACAGATTCTTCGACTTGGTATCCCCATCCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAATCATCGTCCGACGTCAAGTCCTACATCGATAAGGACGGTGATACTATCGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGTCAGCAAACGTCTAACGACGCTGCAGCTGAGGCGTTGA
Protein Sequence MRMGNLIYTCLYSSKGNTSAQITDSSTWYPHPGQHISIRTFRELNHRPTSSPTSIRTVILSNGENSKSTAEVLEEVSKRLTTLQLRR