Tomato leaf deformation virus
Basic Information
Genus |
Begomovirus
|
NCBI Assembly |
GCF_000888595.1 |
Isolate |
Peru: Carabayllo |
Release date |
2015/2/22 |
Submitter |
Marquez-Martin,B., Aragon-Caballero,L., Fiallo-Olive,E., Navas-Castillo,J., Moriones,E. |
Host |
|
Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
ACCGGATGGCCGCGCGATTTTTTTACCCCCTTGTTAAGTTTGGGACCACACATATACGGACAAAACCTTTTGTCCAATCATAGAGCGTCTGACGAGCTTAATTATTAAATTCCTTTAGACTGAGTGGTCTATAAAGACCCAGACAAACTGTAATAATTGATATCTTTAACTCAAAATGCCTAAGCGGGATGCCCCATGGCGCTTAATGGCGGGGACCTCAAAGATTAGCCGTACCTCCAATTATTCACCCAGAGGAGGTATGGGCCCTAAATTCGACAAGAATGCGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAGTATACCGGGTTTTAAGAGGCCCAGATGTTCCCAAGGGCTGTGAGGGGCCCTGTAAGGTCCAGTCTTTCGAGCAGCGTCACGATATCTCCCGTATTGGCAAGGTCATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACCCACCGAGTCGGTAAGCGTTTCTGTGTGAAGTCCGTCTATATTTTAGGTAAAATATGGATGGACGAGAACATCAAGTTGAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCCTATAGCTCTCCCATGGACTTTGGCCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTTCGAGATCGTTTTCAGGTTATGCATAGGTTCTATGCTAAGGTCACGGGAGGTCAGTATGCCAGTAACGAGCAGGCTCTGGTGAGGCGCTTTTGGAAGGTCAACAATCATGTGGTCTATAACCATCAGGAAGCTGGGAAATACGAGAACCATACGGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTAGCTATTTTTATGATTCAATAACAAATTAATAAAGTTTAATTTTTATTGAATGATTCTCAAGTACATGATTTACATATGGTTTATCTGTTGCAAATCGAACAGATCTAATTACATTGTTAATAGAAATAACTCCTAAATTATCTAAATAAAATAAAACTAAATGTCTAAATCTATTTAAATATGTCGTCCCAGAAGCTTGAACTGATGTCGTCCAGACTTGGAAGTTCAAGAAGGCTTTGTGTAGTTGAAGCGACTTCCTCAGGTTGTGGTTGAACCGTATTTGGATGTGGTATACTCTCGTCGTTGTGGACGGTATGTCTTCCACGTTCTGTATCTTGAAATAAAGGGGATTTGGTACCTCCCAGATAAAAACGGAATTCTCTGCCTGATGCACAGTGATGTTCTCCCCGGTGCGTGAATCCATTATTAACACAGTTAATATGCAGGAAGAATGAGCAGCCACAGTCTAGGTCTATGCGTTTCCTTCTGATGGGCTTTGCCTTGGCAATCTTATGCCTCGTTTTGATAGAGGGAGGAGTTGAGGAAGATGAATTTTGCATTGTGGAGTGTCCACGCTCTTAGAGCTGCATTTTCCTCTTTCTCAAGGAAGTCTTTATAGCTCTGTCCCTCTCCTGGATTGCAGAGCACGATAGAGGGTATGCCACCTTTAATTTGAATTGGCTTTCCGTATTTACAGTTTGATTGCCAATCTTTCTGGGCCCCTATCAGCTCTTTCCAATGTTTCATCTTTAAATATTGCGGACTGACGTCATCAATGACGTTATAGTCCGCTCCATTTGAATAAACTTTGGAATTAAAATCCAGGTGTCCACTCAGATAATTATGTGGGCCTAGTGCACGAGCCCACATAGTCTTACCTGTCCTTGAACATCCCTCTATTATTATACTGATAGGTCTTTCTGGCCGCGCAGCGGCACCCCTACCAAAATAATCATCAGCCCATTCTTGCATCTCCTCCGGGACGTTAGTGAAGGAGGAGAGTGGAAACGGAGGAGACCATGGCTCCGGAGCCTTCGAAAAAATTTTATCTAAATTACAATTTAAATTATGAAATTGAAATAAATATTTTTCAGGGAGTTTCTCCCTTATTATTTGGAGGGCTGCCTCTTTGCTACCGCTATTTAAGGCTTCTGCGGCAGCGTCGTTAGCAGTTTGGCTGCCTCCTCTAGCACTTCTGCCGTCGACTTGGAATTCTCCCCATTCAAGTGTATCTCCGTCCTTGTCGACGTAGGCGTTGACGTCGGTGCTGGATTTAGCTCCCTGAACGTTCGGATGGAAATGTGTTGACCTGGTTGGGGATACCAGGTCGAAGAATCTGTTATTCTTACATTGGAATTTGCCTTGGAACTGGAGTAGCACGTGGAGATGATGTTGCCCATCTTCGTGAAGTTCCCTTGCAATTTTGATATATTTCTTATTTGTGGGTGTCTCTAGATTTTGCAATTGGGAAAGTGCTTCTTCTTTGGTTAAATTGCAGTGGGGATATGTAAGAAAATAATTTTTTGCATTTATCTTAAAGGCCTTAGGTGGGGGCATTTTGGTAATAAATATTTTGGACACCGATTGGTTTGGCTTCTAAAACTTATAGCAATCGGTGTACTGGAGTCTTATTTATAGTAGGAGTTCCTAAAGGATCTAGCAACACGTGGCGGCCATCCGTATAATATT
Gene Information
NCBI Accession
|
YP_003896041.2
|
Location
|
176-931 |
Gene Name
|
AV1 |
Protein Name
|
AV1 |
Coding Region
|
ATGCCTAAGCGGGATGCCCCATGGCGCTTAATGGCGGGGACCTCAAAGATTAGCCGTACCTCCAATTATTCACCCAGAGGAGGTATGGGCCCTAAATTCGACAAGAATGCGGCCTGGGTTAACAGGCCCATGTACAGGAAGCCCAGAGTATACCGGGTTTTAAGAGGCCCAGATGTTCCCAAGGGCTGTGAGGGGCCCTGTAAGGTCCAGTCTTTCGAGCAGCGTCACGATATCTCCCGTATTGGCAAGGTCATGTGTATATCCGATGTCACCCGTGGTAACGGTATTACCCACCGAGTCGGTAAGCGTTTCTGTGTGAAGTCCGTCTATATTTTAGGTAAAATATGGATGGACGAGAACATCAAGTTGAAGAACCACACTAACAGCGTCATGTTCTGGTTGGTCAGAGACCGGAGACCCTATAGCTCTCCCATGGACTTTGGCCAGGTGTTCAACATGTTCGACAATGAGCCCAGTACTGCCACCGTGAAGAACGATCTTCGAGATCGTTTTCAGGTTATGCATAGGTTCTATGCTAAGGTCACGGGAGGTCAGTATGCCAGTAACGAGCAGGCTCTGGTGAGGCGCTTTTGGAAGGTCAACAATCATGTGGTCTATAACCATCAGGAAGCTGGGAAATACGAGAACCATACGGAGAACGCCCTATTATTGTACATGGCATGTACTCATGCCTCTAACCCTGTGTATGCTACGTTGAAAATACGTAGCTATTTTTATGATTCAATAACAAATTAA |
Protein Sequence
|
MPKRDAPWRLMAGTSKISRTSNYSPRGGMGPKFDKNAAWVNRPMYRKPRVYRVLRGPDVPKGCEGPCKVQSFEQRHDISRIGKVMCISDVTRGNGITHRVGKRFCVKSVYILGKIWMDENIKLKNHTNSVMFWLVRDRRPYSSPMDFGQVFNMFDNEPSTATVKNDLRDRFQVMHRFYAKVTGGQYASNEQALVRRFWKVNNHVVYNHQEAGKYENHTENALLLYMACTHASNPVYATLKIRSYFYDSITN |
NCBI Accession
|
YP_003896042.1
|
Location
|
928-1326 |
Gene Name
|
AC3 |
Protein Name
|
AC3 |
Coding Region
|
ATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAGATTTAGACATTTAGTTTTATTTTATTTAGATAATTTAGGAGTTATTTCTATTAACAATGTAATTAGATCTGTTCGATTTGCAACAGATAAACCATATGTAAATCATGTACTTGAGAATCATTCAATAAAAATTAAACTTTATTAA |
Protein Sequence
|
MDSRTGENITVHQAENSVFIWEVPNPLYFKIQNVEDIPSTTTRVYHIQIRFNHNLRKSLQLHKAFLNFQVWTTSVQASGTTYLNRFRHLVLFYLDNLGVISINNVIRSVRFATDKPYVNHVLENHSIKIKLY |
NCBI Accession
|
YP_003896043.1
|
Location
|
1073-1462 |
Gene Name
|
AC2 |
Protein Name
|
AC2 |
Coding Region
|
ATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAAGATTGCCAAGGCAAAGCCCATCAGAAGGAAACGCATAGACCTAGACTGTGGCTGCTCATTCTTCCTGCATATTAACTGTGTTAATAATGGATTCACGCACCGGGGAGAACATCACTGTGCATCAGGCAGAGAATTCCGTTTTTATCTGGGAGGTACCAAATCCCCTTTATTTCAAGATACAGAACGTGGAAGACATACCGTCCACAACGACGAGAGTATACCACATCCAAATACGGTTCAACCACAACCTGAGGAAGTCGCTTCAACTACACAAAGCCTTCTTGAACTTCCAAGTCTGGACGACATCAGTTCAAGCTTCTGGGACGACATATTTAAATAG |
Protein Sequence
|
MQNSSSSTPPSIKTRHKIAKAKPIRRKRIDLDCGCSFFLHINCVNNGFTHRGEHHCASGREFRFYLGGTKSPLFQDTERGRHTVHNDESIPHPNTVQPQPEEVASTTQSLLELPSLDDISSSFWDDIFK |
NCBI Accession
|
YP_003896044.1
|
Location
|
1413-2459 |
Gene Name
|
AC1 |
Protein Name
|
AC1 |
Coding Region
|
ATGCCCCCACCTAAGGCCTTTAAGATAAATGCAAAAAATTATTTTCTTACATATCCCCACTGCAATTTAACCAAAGAAGAAGCACTTTCCCAATTGCAAAATCTAGAGACACCCACAAATAAGAAATATATCAAAATTGCAAGGGAACTTCACGAAGATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAAATAGCGGTAGCAAAGAGGCAGCCCTCCAAATAATAAGGGAGAAACTCCCTGAAAAATATTTATTTCAATTTCATAATTTAAATTGTAATTTAGATAAAATTTTTTCGAAGGCTCCGGAGCCATGGTCTCCTCCGTTTCCACTCTCCTCCTTCACTAACGTCCCGGAGGAGATGCAAGAATGGGCTGATGATTATTTTGGTAGGGGTGCCGCTGCGCGGCCAGAAAGACCTATCAGTATAATAATAGAGGGATGTTCAAGGACAGGTAAGACTATGTGGGCTCGTGCACTAGGCCCACATAATTATCTGAGTGGACACCTGGATTTTAATTCCAAAGTTTATTCAAATGGAGCGGACTATAACGTCATTGATGACGTCAGTCCGCAATATTTAAAGATGAAACATTGGAAAGAGCTGATAGGGGCCCAGAAAGATTGGCAATCAAACTGTAAATACGGAAAGCCAATTCAAATTAAAGGTGGCATACCCTCTATCGTGCTCTGCAATCCAGGAGAGGGACAGAGCTATAAAGACTTCCTTGAGAAAGAGGAAAATGCAGCTCTAAGAGCGTGGACACTCCACAATGCAAAATTCATCTTCCTCAACTCCTCCCTCTATCAAAACGAGGCATAA |
Protein Sequence
|
MPPPKAFKINAKNYFLTYPHCNLTKEEALSQLQNLETPTNKKYIKIARELHEDGQHHLHVLLQFQGKFQCKNNRFFDLVSPTRSTHFHPNVQGAKSSTDVNAYVDKDGDTLEWGEFQVDGRSARGGSQTANDAAAEALNSGSKEAALQIIREKLPEKYLFQFHNLNCNLDKIFSKAPEPWSPPFPLSSFTNVPEEMQEWADDYFGRGAAARPERPISIIIEGCSRTGKTMWARALGPHNYLSGHLDFNSKVYSNGADYNVIDDVSPQYLKMKHWKELIGAQKDWQSNCKYGKPIQIKGGIPSIVLCNPGEGQSYKDFLEKEENAALRAWTLHNAKFIFLNSSLYQNEA |
NCBI Accession
|
YP_003896045.1
|
Location
|
2045-2302 |
Gene Name
|
AC4 |
Protein Name
|
AC4 |
Coding Region
|
ATGGGCAACATCATCTCCACGTGCTACTCCAGTTCCAAGGCAAATTCCAATGTAAGAATAACAGATTCTTCGACCTGGTATCCCCAACCAGGTCAACACATTTCCATCCGAACGTTCAGGGAGCTAAATCCAGCACCGACGTCAACGCCTACGTCGACAAGGACGGAGATACACTTGAATGGGGAGAATTCCAAGTCGACGGCAGAAGTGCTAGAGGAGGCAGCCAAACTGCTAACGACGCTGCCGCAGAAGCCTTAA |
Protein Sequence
|
MGNIISTCYSSSKANSNVRITDSSTWYPQPGQHISIRTFRELNPAPTSTPTSTRTEIHLNGENSKSTAEVLEEAAKLLTTLPQKP |