Tomato leaf curl virus
Basic Information
| Genus |
Begomovirus
|
| NCBI Assembly |
GCF_000838425.1 |
| Release date |
2015/2/12 |
| Submitter |
Dry,I.B., Rigden,J.E., Krake,L.R., Mullineaux,P.M., Rezaian,M.A. |
| Download |
Genome
|GFF3
|PEP
|CDS |
Genomic Organization
JBrowse
Genome
TAATATTACCGGATGGCCGCGAAAAAATAAAGTGGTCCCCCCCCACGTGATTGATGTGACCTGTCGACGAATGAGAACCGCGCGTCATCGCTTATTTAAGTTTTTTGTCGTATATATACTTGGGCCCTAAGTATTTAGGCCCATAAAATGTGGGATCCTTTAGTCCACGAATTTCCTGAAACCGTTCACGGTTTCCGTTGTATGCTCGCCAACAAATATTTGTTGGCTGTTGAATCAAAATACGCTCCGGATACATTGGGATACGAATTGATCAGGGATTGCATTGGGGTTGTTAGGTCTCGAAATTATGAGCAAGCGACCAGCAGATATCGTGATATCTACACCCGCCTCCAAGGTGCGACGGAAGCTGAACTTCAACAGTCCGTTCAAGAGCGCTGCTGCTGTCCCCACTGTCCGCGTCACAAGAAGGCGGACATGGGTGAATCGGCCCATGTACAGAAAGCCCATGATGTACAGGCTGTTCAGAAGCCCTGATGTTCCACGGGGCTGTGAAGGCCCATGTAAGGTCCAATCATATGAGCAGCGTCATGATGTGGCCCATGTGGGTAAGGTCCTTTGTGTTTCTGATGTCACTAGGGGTACTGGAATAACGCATCGCACTGGGAAGAGATTTTGTATTAAATCTATTTATGTCCTGGGCAAGATCTGGATGGATGATAACATTAAGACTAGGAACCATACGAATACAGTTATGTTCTTCTTGGTCCGTGATAGGAGGCCCTATGGGACTCCTAAGGATTTTGGGCAGGTGTTCAACATGTATGACAATGAGCCCAGCACAGCTACTGTGAAGAACGACATGAGGGATGGCTTTCAAGTTATCAAGAAGTGGTCCGCAACTGTCACTGGTGGGCAATATGCGTCTAAGGAGCAGGCTATTATCAATAGGTTTTATAAAATATATAACCATTGTACTTACAATCATCAGGAAGCTGCAAAGTATGAGAATCATACTGAGAATGCATTATTATTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACGTTGAAGATACGGATCTATTTCTATGATTCGATTCAGAATTAATAAAAATTAAATTTTATATCATGATCTTCAATTACATCAAATGTTGAGTCTAGTACATTATACAATACATGATCAACTGATCTAATTACATTGTTAATGCTAATAACTCCTAAACTATCTAAATACTTCATGACTTGGGTCTTAAATACCCTCAAGAAACGCCAAGTCGCTGGTTGTAAGCGAGTGAAAACTGTGAAGTCCAGGAAGCATTTGTGTATCGCCAATGCTCTCCTCAGGTTGTGATTGAACTGTATCCGGACTTGAATGATGTCGTGGTTGTAGTTGAACGGGCGCTTGTGGTGCTTTATGATCTTGAAATAGAGGGGATTTGGAACCCTCCAGATATACTCGCCATTCATCGCTTGACGAGCAGTGATGGGTTCCCCTGTGCGTGAATCCATGGTTATGGCAGTTGATATGCAGGTAGTAAGAACACCCGCACGGCAAATCAATTCTCTTCCTCCGGATGGACCTCTTCTTCGCTATTTTGTGTTGGACCTTGATAGGTACCTGAGTATAGTGGCTCGTTGAGGGTGATGAATTCTGCATTTTTTAAAGCCCAGGCTTTTAATGCGCTGTTTTTCTCCTCATCGAGGTACTCTTTATAGCTGGAGTTGGGTCCTGGATTGCAGAGGAAGATAGTGGGTATTCCACCTTTAATTTGAACTGGCTTGCCGTACTTGGTGTTGCTTTGCCAATCTCTCTGGGCCCCCATGAATTCTTTGAAATGTTTCAGATAATGCGGATCAACGTCATCAATGACGTTATACCACGCATCATTTGAATACACTTTAGGGCTTAAATCAAGGTGCCCACATAAATAATTATGTGGACCCAATGAACGCGCCCAAACAGTCTTCCCTGTTCTAGACTCACCCTCTATTACTATACTTATGGGTCTCAAAGGCCGCGCAGCGGCATCCTTCACATTCTCGGCGACCCACTCCTCGAGTTCTTCTGGAACTCGATCAAAAGAAGAAGATAAAAAAGGAGAAACATAAACCTCCAACGGAGGTGTAAAAATCCTATCTAAATTACTATTTAAATTATGAAATTGTAAAACATAATCCTTAGGGGCTAATTCCCTAAGGACGTTAAGAGCCTCTGACTTACTTCCAGTGTTAAGCGCCTGGGCGTAAGCGTCATTGGCTGATTGTTGTCCCCCTCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGAGGGTGTCTCCGTCCTTCTCCAGATAGGACTTGACGTCTGACGAGCTCTTAGCTCCCTGAATGTTCGGATGGAAATGTGCTGACCTGGTGGGGGAGACCAGGTCGAAGAATCGTTGATTCTTGCACTGGAACTTGCCTTCGAACTGGATAAGCACGTGGAGATGAGGCTCCCCATTCTCATGGAGTTCTCTGCAAACTTTAATATATTTTTTGGATGTTGGGGTTTCTAGGTTATTTAATTGGGAAAGGGCTTCTTCTTTAGTGAGAGAGCATTTGGGATAAGTGAGGAAATAATTCTTAGCATTTATACGGAATGACTTTGGTCTAGTCATTGCGTTTTAGCAATTGGTGTCTCTCAACTTGGTAAATGAATCGGTGTCTGGGGTCTTATTTATAGTTGGACACCGTATGGCATTTTGGTAATTCGGAGAATTCTCAAAAGTAAATAATTCAAAATTCAAATCCCTCAAGCGGCCATCCGTC
Gene Information
|
NCBI Accession
|
NP_632002.1
|
|
Location
|
148-495 |
|
Gene Name
|
v1 |
|
Protein Name
|
pre-coat protein |
|
Coding Region
|
ATGTGGGATCCTTTAGTCCACGAATTTCCTGAAACCGTTCACGGTTTCCGTTGTATGCTCGCCAACAAATATTTGTTGGCTGTTGAATCAAAATACGCTCCGGATACATTGGGATACGAATTGATCAGGGATTGCATTGGGGTTGTTAGGTCTCGAAATTATGAGCAAGCGACCAGCAGATATCGTGATATCTACACCCGCCTCCAAGGTGCGACGGAAGCTGAACTTCAACAGTCCGTTCAAGAGCGCTGCTGCTGTCCCCACTGTCCGCGTCACAAGAAGGCGGACATGGGTGAATCGGCCCATGTACAGAAAGCCCATGATGTACAGGCTGTTCAGAAGCCCTGA |
|
Protein Sequence
|
MWDPLVHEFPETVHGFRCMLANKYLLAVESKYAPDTLGYELIRDCIGVVRSRNYEQATSRYRDIYTRLQGATEAELQQSVQERCCCPHCPRHKKADMGESAHVQKAHDVQAVQKP |
|
NCBI Accession
|
NP_632003.1
|
|
Location
|
308-1078 |
|
Gene Name
|
v2 |
|
Protein Name
|
coat protein |
|
Coding Region
|
ATGAGCAAGCGACCAGCAGATATCGTGATATCTACACCCGCCTCCAAGGTGCGACGGAAGCTGAACTTCAACAGTCCGTTCAAGAGCGCTGCTGCTGTCCCCACTGTCCGCGTCACAAGAAGGCGGACATGGGTGAATCGGCCCATGTACAGAAAGCCCATGATGTACAGGCTGTTCAGAAGCCCTGATGTTCCACGGGGCTGTGAAGGCCCATGTAAGGTCCAATCATATGAGCAGCGTCATGATGTGGCCCATGTGGGTAAGGTCCTTTGTGTTTCTGATGTCACTAGGGGTACTGGAATAACGCATCGCACTGGGAAGAGATTTTGTATTAAATCTATTTATGTCCTGGGCAAGATCTGGATGGATGATAACATTAAGACTAGGAACCATACGAATACAGTTATGTTCTTCTTGGTCCGTGATAGGAGGCCCTATGGGACTCCTAAGGATTTTGGGCAGGTGTTCAACATGTATGACAATGAGCCCAGCACAGCTACTGTGAAGAACGACATGAGGGATGGCTTTCAAGTTATCAAGAAGTGGTCCGCAACTGTCACTGGTGGGCAATATGCGTCTAAGGAGCAGGCTATTATCAATAGGTTTTATAAAATATATAACCATTGTACTTACAATCATCAGGAAGCTGCAAAGTATGAGAATCATACTGAGAATGCATTATTATTGTATATGGCATGTACACATGCCTCTAACCCAGTGTATGCTACGTTGAAGATACGGATCTATTTCTATGATTCGATTCAGAATTAA |
|
Protein Sequence
|
MSKRPADIVISTPASKVRRKLNFNSPFKSAAAVPTVRVTRRRTWVNRPMYRKPMMYRLFRSPDVPRGCEGPCKVQSYEQRHDVAHVGKVLCVSDVTRGTGITHRTGKRFCIKSIYVLGKIWMDDNIKTRNHTNTVMFFLVRDRRPYGTPKDFGQVFNMYDNEPSTATVKNDMRDGFQVIKKWSATVTGGQYASKEQAIINRFYKIYNHCTYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSIQN |
|
NCBI Accession
|
NP_632004.1
|
|
Location
|
1075-1479 |
|
Gene Name
|
c3 |
|
Protein Name
|
replication enhancer protein |
|
Coding Region
|
ATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCGATGAATGGCGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATCATAAAGCACCACAAGCGCCCGTTCAACTACAACCACGACATCATTCAAGTCCGGATACAGTTCAATCACAACCTGAGGAGAGCATTGGCGATACACAAATGCTTCCTGGACTTCACAGTTTTCACTCGCTTACAACCAGCGACTTGGCGTTTCTTGAGGGTATTTAAGACCCAAGTCATGAAGTATTTAGATAGTTTAGGAGTTATTAGCATTAACAATGTAATTAGATCAGTTGATCATGTATTGTATAATGTACTAGACTCAACATTTGATGTAATTGAAGATCATGATATAAAATTTAATTTTTATTAA |
|
Protein Sequence
|
MDSRTGEPITARQAMNGEYIWRVPNPLYFKIIKHHKRPFNYNHDIIQVRIQFNHNLRRALAIHKCFLDFTVFTRLQPATWRFLRVFKTQVMKYLDSLGVISINNVIRSVDHVLYNVLDSTFDVIEDHDIKFNFY |
|
NCBI Accession
|
NP_632005.1
|
|
Location
|
1220-1627 |
|
Gene Name
|
c2 |
|
Protein Name
|
transcriptional transactivator protein |
|
Coding Region
|
ATGCAGAATTCATCACCCTCAACGAGCCACTATACTCAGGTACCTATCAAGGTCCAACACAAAATAGCGAAGAAGAGGTCCATCCGGAGGAAGAGAATTGATTTGCCGTGCGGGTGTTCTTACTACCTGCATATCAACTGCCATAACCATGGATTCACGCACAGGGGAACCCATCACTGCTCGTCAAGCGATGAATGGCGAGTATATCTGGAGGGTTCCAAATCCCCTCTATTTCAAGATCATAAAGCACCACAAGCGCCCGTTCAACTACAACCACGACATCATTCAAGTCCGGATACAGTTCAATCACAACCTGAGGAGAGCATTGGCGATACACAAATGCTTCCTGGACTTCACAGTTTTCACTCGCTTACAACCAGCGACTTGGCGTTTCTTGAGGGTATTTAA |
|
Protein Sequence
|
MQNSSPSTSHYTQVPIKVQHKIAKKRSIRRKRIDLPCGCSYYLHINCHNHGFTHRGTHHCSSSDEWRVYLEGSKSPLFQDHKAPQAPVQLQPRHHSSPDTVQSQPEESIGDTQMLPGLHSFHSLTTSDLAFLEGI |
|
NCBI Accession
|
NP_632006.1
|
|
Location
|
1527-2615 |
|
Gene Name
|
c1 |
|
Protein Name
|
replication-associated protein |
|
Coding Region
|
ATGACTAGACCAAAGTCATTCCGTATAAATGCTAAGAATTATTTCCTCACTTATCCCAAATGCTCTCTCACTAAAGAAGAAGCCCTTTCCCAATTAAATAACCTAGAAACCCCAACATCCAAAAAATATATTAAAGTTTGCAGAGAACTCCATGAGAATGGGGAGCCTCATCTCCACGTGCTTATCCAGTTCGAAGGCAAGTTCCAGTGCAAGAATCAACGATTCTTCGACCTGGTCTCCCCCACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCCAGGCGCTTAACACTGGAAGTAAGTCAGAGGCTCTTAACGTCCTTAGGGAATTAGCCCCTAAGGATTATGTTTTACAATTTCATAATTTAAATAGTAATTTAGATAGGATTTTTACACCTCCGTTGGAGGTTTATGTTTCTCCTTTTTTATCTTCTTCTTTTGATCGAGTTCCAGAAGAACTCGAGGAGTGGGTCGCCGAGAATGTGAAGGATGCCGCTGCGCGGCCTTTGAGACCCATAAGTATAGTAATAGAGGGTGAGTCTAGAACAGGGAAGACTGTTTGGGCGCGTTCATTGGGTCCACATAATTATTTATGTGGGCACCTTGATTTAAGCCCTAAAGTGTATTCAAATGATGCGTGGTATAACGTCATTGATGACGTTGATCCGCATTATCTGAAACATTTCAAAGAATTCATGGGGGCCCAGAGAGATTGGCAAAGCAACACCAAGTACGGCAAGCCAGTTCAAATTAAAGGTGGAATACCCACTATCTTCCTCTGCAATCCAGGACCCAACTCCAGCTATAAAGAGTACCTCGATGAGGAGAAAAACAGCGCATTAAAAGCCTGGGCTTTAAAAAATGCAGAATTCATCACCCTCAACGAGCCACTATACTCAGGTACCTATCAAGGTCCAACACAAAATAGCGAAGAAGAGGTCCATCCGGAGGAAGAGAATTGA |
|
Protein Sequence
|
MTRPKSFRINAKNYFLTYPKCSLTKEEALSQLNNLETPTSKKYIKVCRELHENGEPHLHVLIQFEGKFQCKNQRFFDLVSPTRSAHFHPNIQGAKSSSDVKSYLEKDGDTLEWGEFQIDGRSARGGQQSANDAYAQALNTGSKSEALNVLRELAPKDYVLQFHNLNSNLDRIFTPPLEVYVSPFLSSSFDRVPEELEEWVAENVKDAAARPLRPISIVIEGESRTGKTVWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPVQIKGGIPTIFLCNPGPNSSYKEYLDEEKNSALKAWALKNAEFITLNEPLYSGTYQGPTQNSEEEVHPEEEN |
|
NCBI Accession
|
NP_632007.1
|
|
Location
|
2156-2464 |
|
Gene Name
|
c4 |
|
Protein Name
|
C4 protein |
|
Coding Region
|
ATGAGAATGGGGAGCCTCATCTCCACGTGCTTATCCAGTTCGAAGGCAAGTTCCAGTGCAAGAATCAACGATTCTTCGACCTGGTCTCCCCCACCAGGTCAGCACATTTCCATCCGAACATTCAGGGAGCTAAGAGCTCGTCAGACGTCAAGTCCTATCTGGAGAAGGACGGAGACACCCTCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGAGGGGGACAACAATCAGCCAATGACGCTTACGCCCAGGCGCTTAACACTGGAAGTAAGTCAGAGGCTCTTAACGTCCTTAGGGAATTAG |
|
Protein Sequence
|
MRMGSLISTCLSSSKASSSARINDSSTWSPPPGQHISIRTFRELRARQTSSPIWRRTETPSNGESFRSMDDLQEGDNNQPMTLTPRRLTLEVSQRLLTSLGN |