Tomato leaf curl Uganda virus


Basic Information

Genus Begomovirus
NCBI Assembly GCF_002824385.1
Isolate Uganda: Iganga
Release date 2018/8/25
Submitter Shih,S.L., Green,S.K., Tsai,W.S., Ssekyewa,C.
Host
Download Genome |GFF3 |PEP |CDS

Genomic Organization


JBrowse


Genome

NC_038473
ACCGGATGGCCGCGCCTCCGAAAAAGAAAAAGTGGACCCCCCCATGATTTATTGTCAGCCAATCAGAATAGCGCGTGAAAGCTTAGATATTTTGGTTTTTGTCTTTATATACTTCTCCACTAAGTTGTTTTTTATTCATAATGTGGGATCCACTGTTAAATGAGTTTCCAGACTCAGTTCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTATTGAGTCCACTTACGAGCCCAATACGTTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCCGAGATTATGTCGAAGCGACCCGGAGATATAATAATTTCAACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCGTACACCAGCCGTGCTGCTGTCCCCACTGCCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCACGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCATACGAGCAGAGAGATGATGTTAAGCATACTGGTGTTGTCCGTTGTGTTAGTGATGTTACTCGTGGATCGGGTATTACACATAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCATTTACATTATAGGGAAGATATGGATGGATGAGAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGTACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACCGTCAAGAATGATTTGAGAGACAGATACCAAGTTTTGCGGAAATTTCATGCAACTGTTGTAGGTGGACCCTCCGGGATGAAGGAGCACGCGTTAGTTAAGAGATTTTTTAAGGTTAATAATCATGTAGTTTATAATCATCAGGAAGCAGCTAAGTACGAAAACCATACGGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGTTGAAAATACGTATTTATTTCTATGATTCAGTCGGTAATTAATAAAGATTAAATTTTATTTCATGATCCTCCGTAACTTGGAGTGTGTTTACAAGTACATCGTACAATACATGATCAACTGCTCTAATAACTGTATTAATTGAAATTACACCAAGGTTATCTAAATATTTAAGAACTTGATATCTAAATACTCTTAAGAAACGACCAGTCTGAGGCCGTAATGTCGTCCAGACTCTGAAGTTGAGAAAACACTTGTGAATCCCCAATTCCTTCCTCAGGTTGTGGTTGAACCGTATCTGGATCGATATGATGTCGTGGTTGGTGTTGAATGGTCTGATGTTGTGGTCGATGATCTTGAAATAAAGGGGATTTTGTATCTCCCAGATATTTACGCCACTCATCGCTTGATGAGCAGTGATGTATTCCCCGGTGCGTGAATCCATGGTTGTTGCAGTCGATGTGTAGGAAATATGAGCAGCCGCAGTTTAGGTCTATTCGTCTACGTCTGATTACCTTCTTCTTGGCTACTCGGTGTTGGACCTTGATGGGTACCTGTGAACAATGGCTCGTGGAGGGTGACGAAGGTCGCATTCTTGATTGCCCAGGCTTTCAGTGGTGCATTTTTTTCCTCGTCTAGATATTCTCTATATGAGGATGTTGGTCCTGGATTGCAGAGGAAGATAGTGGGAATTCCGCCTTTAATTTGAATGGGCTTCCCGTACTTGGTGTTGCTTTGCCAGTCTCTCTGGGCCCCCATGAATTCTTTAAAGTGCTTTAGATAATGCGGATCAACGTCATCAATGACGTTGTACCACGCATCATTGCTGTACACCTTTGGGCTTAGATCAAGATGACCACACAAATAATTGTGTGGTCCTAATGACCTGGCCCACATTGTCTTGCCTGTTCGACTATCACCCTCGATAACAATACTAATCGGTCTCCATGGCCGCGCAGCGGAAGTCATTACATTCTCAGACACCCAACATTCAAGTTCTTCTGGAACTTGGTTAAAAGAAGAGGAAAGAAAAGGAGAAACATAAGGAGCTGGAGGCTCCTGAAAAATCCTATCTAAATTGCTATTCAAATTATGAAATTGTAAAACAAAATCTTTTGGGGCTAATTCTCTAAGGACTCTAAGAGCCTCCGACTTACTTCCTGAGTTAAGTGCCTTTGCGTAAGCGTCGTTGGCTGACTGTTGCCCACCCCTTGCAGATCGTCCATCGATCTGAAACTCTCCCCATTCGATGGTGTCTCCGTCCTTATCCAGATAGGAATTGACATCTGAACTGGACTTAGCACCTTGTATGTTGGGGTGGAAACTGGTGCTACAGCTTGGGTGTGAACAATCGAAGAGGCGATTGTTCGTAACCGTGATTTTACCCTCGAATTGGATGAGGGCATGCAGATGAGGTTCCCCATTCTGATGGAGTTCTTTACAGATTTTGATATATTTAGGATTTGATGCAAGGGTAAGGTTTTGAATGAAAGAGAGAAGGTATTCTTTTGGTAAGGAACACTTGGGATATGTGAGGAAAATGTTTTTAGCTTGTATTTTAAATCGTGGATTTCTCATATTGACTTGGTCAATTGGAGACACTCTGATTCATGTCTCTGGTGAATTGGAGACAATATATAGTGTCTCTAAATGGCATTATTGTAATTATTATAAATAAAATTTGAAATTCAAAAGCGGCCATCCGTATAATATT

Gene Information

NCBI Accession YP_009506546.1
Location 141-491
Gene Name V2
Protein Name pre-coat protein
Coding Region ATGTGGGATCCACTGTTAAATGAGTTTCCAGACTCAGTTCATGGGTTTCGTTGTATGCTTGCAATAAAATATTTGCAGGCTATTGAGTCCACTTACGAGCCCAATACGTTGGGCCACGATTTAATTCGAGATCTCATTTGTGTCGTTAGAGCCCGAGATTATGTCGAAGCGACCCGGAGATATAATAATTTCAACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCGTACACCAGCCGTGCTGCTGTCCCCACTGCCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGA
Protein Sequence MWDPLLNEFPDSVHGFRCMLAIKYLQAIESTYEPNTLGHDLIRDLICVVRARDYVEATRRYNNFNARLEGSSKAELRQPVHQPCCCPHCPRHKQTSIMDLQAHVSKAQDVQNVQKP

NCBI Accession YP_009506547.1
Location 301-1077
Gene Name V1
Protein Name coat protein
Coding Region ATGTCGAAGCGACCCGGAGATATAATAATTTCAACGCCCGCCTCGAAGGTTCGTCGAAGGCTGAACTTCGACAGCCCGTACACCAGCCGTGCTGCTGTCCCCACTGCCCCAGGCACAAGCAGACGTCGATCATGGACTTACAGGCCCATGTATCGAAAGCCCAGGATGTACAGAATGTACAGAAGCCCTGATGTTCCACGGGGTTGTGAAGGCCCATGTAAGGTTCAGTCATACGAGCAGAGAGATGATGTTAAGCATACTGGTGTTGTCCGTTGTGTTAGTGATGTTACTCGTGGATCGGGTATTACACATAGGGTTGGCAAGAGGTTCTGTGTGAAGTCCATTTACATTATAGGGAAGATATGGATGGATGAGAATATCAAGAAGCAGAATCACACTAATCAGGTCATGTTTTTTTTGGTCCGTGATAGAAGGCCCTATGGTACAAGCCCAATGGACTTTGGGCAGGTGTTTAACATGTTTGATAACGAGCCCAGTACAGCTACCGTCAAGAATGATTTGAGAGACAGATACCAAGTTTTGCGGAAATTTCATGCAACTGTTGTAGGTGGACCCTCCGGGATGAAGGAGCACGCGTTAGTTAAGAGATTTTTTAAGGTTAATAATCATGTAGTTTATAATCATCAGGAAGCAGCTAAGTACGAAAACCATACGGAGAATGCGTTGTTGTTGTATATGGCATGTACTCATGCCTCTAATCCTGTGTATGCTACGTTGAAAATACGTATTTATTTCTATGATTCAGTCGGTAATTAA
Protein Sequence MSKRPGDIIISTPASKVRRRLNFDSPYTSRAAVPTAPGTSRRRSWTYRPMYRKPRMYRMYRSPDVPRGCEGPCKVQSYEQRDDVKHTGVVRCVSDVTRGSGITHRVGKRFCVKSIYIIGKIWMDENIKKQNHTNQVMFFLVRDRRPYGTSPMDFGQVFNMFDNEPSTATVKNDLRDRYQVLRKFHATVVGGPSGMKEHALVKRFFKVNNHVVYNHQEAAKYENHTENALLLYMACTHASNPVYATLKIRIYFYDSVGN

NCBI Accession YP_009506548.1
Location 529-855
Gene Name C5
Protein Name C5 protein
Coding Region ATGAAATTTCCGCAAAACTTGGTATCTGTCTCTCAAATCATTCTTGACGGTAGCTGTACTGGGCTCGTTATCAAACATGTTAAACACCTGCCCAAAGTCCATTGGGCTTGTACCATAGGGCCTTCTATCACGGACCAAAAAAAACATGACCTGATTAGTGTGATTCTGCTTCTTGATATTCTCATCCATCCATATCTTCCCTATAATGTAAATGGACTTCACACAGAACCTCTTGCCAACCCTATGTGTAATACCCGATCCACGAGTAACATCACTAACACAACGGACAACACCAGTATGCTTAACATCATCTCTCTGCTCGTATGA
Protein Sequence MKFPQNLVSVSQIILDGSCTGLVIKHVKHLPKVHWACTIGPSITDQKKHDLISVILLLDILIHPYLPYNVNGLHTEPLANPMCNTRSTSNITNTTDNTSMLNIISLLV

NCBI Accession YP_009506549.1
Location 1074-1478
Gene Name C3
Protein Name replication enhancement protein
Coding Region ATGGATTCACGCACCGGGGAATACATCACTGCTCATCAAGCGATGAGTGGCGTAAATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATCATCGACCACAACATCAGACCATTCAACACCAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTGAGGAAGGAATTGGGGATTCACAAGTGTTTTCTCAACTTCAGAGTCTGGACGACATTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAGATATCAAGTTCTTAAATATTTAGATAACCTTGGTGTAATTTCAATTAATACAGTTATTAGAGCAGTTGATCATGTATTGTACGATGTACTTGTAAACACACTCCAAGTTACGGAGGATCATGAAATAAAATTTAATCTTTATTAA
Protein Sequence MDSRTGEYITAHQAMSGVNIWEIQNPLYFKIIDHNIRPFNTNHDIISIQIRFNHNLRKELGIHKCFLNFRVWTTLRPQTGRFLRVFRYQVLKYLDNLGVISINTVIRAVDHVLYDVLVNTLQVTEDHEIKFNLY

NCBI Accession YP_009506550.1
Location 1219-1626
Gene Name C2
Protein Name transcriptional activation protein
Coding Region ATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAGGTACCCATCAAGGTCCAACACCGAGTAGCCAAGAAGAAGGTAATCAGACGTAGACGAATAGACCTAAACTGCGGCTGCTCATATTTCCTACACATCGACTGCAACAACCATGGATTCACGCACCGGGGAATACATCACTGCTCATCAAGCGATGAGTGGCGTAAATATCTGGGAGATACAAAATCCCCTTTATTTCAAGATCATCGACCACAACATCAGACCATTCAACACCAACCACGACATCATATCGATCCAGATACGGTTCAACCACAACCTGAGGAAGGAATTGGGGATTCACAAGTGTTTTCTCAACTTCAGAGTCTGGACGACATTACGGCCTCAGACTGGTCGTTTCTTAAGAGTATTTAG
Protein Sequence MRPSSPSTSHCSQVPIKVQHRVAKKKVIRRRRIDLNCGCSYFLHIDCNNHGFTHRGIHHCSSSDEWRKYLGDTKSPLFQDHRPQHQTIQHQPRHHIDPDTVQPQPEEGIGDSQVFSQLQSLDDITASDWSFLKSI

NCBI Accession YP_009506551.1
Location 1535-2611
Gene Name C1
Protein Name replication-associated protein
Coding Region ATGAGAAATCCACGATTTAAAATACAAGCTAAAAACATTTTCCTCACATATCCCAAGTGTTCCTTACCAAAAGAATACCTTCTCTCTTTCATTCAAAACCTTACCCTTGCATCAAATCCTAAATATATCAAAATCTGTAAAGAACTCCATCAGAATGGGGAACCTCATCTGCATGCCCTCATCCAATTCGAGGGTAAAATCACGGTTACGAACAATCGCCTCTTCGATTGTTCACACCCAAGCTGTAGCACCAGTTTCCACCCCAACATACAAGGTGCTAAGTCCAGTTCAGATGTCAATTCCTATCTGGATAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGGGGTGGGCAACAGTCAGCCAACGACGCTTACGCAAAGGCACTTAACTCAGGAAGTAAGTCGGAGGCTCTTAGAGTCCTTAGAGAATTAGCCCCAAAAGATTTTGTTTTACAATTTCATAATTTGAATAGCAATTTAGATAGGATTTTTCAGGAGCCTCCAGCTCCTTATGTTTCTCCTTTTCTTTCCTCTTCTTTTAACCAAGTTCCAGAAGAACTTGAATGTTGGGTGTCTGAGAATGTAATGACTTCCGCTGCGCGGCCATGGAGACCGATTAGTATTGTTATCGAGGGTGATAGTCGAACAGGCAAGACAATGTGGGCCAGGTCATTAGGACCACACAATTATTTGTGTGGTCATCTTGATCTAAGCCCAAAGGTGTACAGCAATGATGCGTGGTACAACGTCATTGATGACGTTGATCCGCATTATCTAAAGCACTTTAAAGAATTCATGGGGGCCCAGAGAGACTGGCAAAGCAACACCAAGTACGGGAAGCCCATTCAAATTAAAGGCGGAATTCCCACTATCTTCCTCTGCAATCCAGGACCAACATCCTCATATAGAGAATATCTAGACGAGGAAAAAAATGCACCACTGAAAGCCTGGGCAATCAAGAATGCGACCTTCGTCACCCTCCACGAGCCATTGTTCACAGGTACCCATCAAGGTCCAACACCGAGTAGCCAAGAAGAAGGTAATCAGACGTAG
Protein Sequence MRNPRFKIQAKNIFLTYPKCSLPKEYLLSFIQNLTLASNPKYIKICKELHQNGEPHLHALIQFEGKITVTNNRLFDCSHPSCSTSFHPNIQGAKSSSDVNSYLDKDGDTIEWGEFQIDGRSARGGQQSANDAYAKALNSGSKSEALRVLRELAPKDFVLQFHNLNSNLDRIFQEPPAPYVSPFLSSSFNQVPEELECWVSENVMTSAARPWRPISIVIEGDSRTGKTMWARSLGPHNYLCGHLDLSPKVYSNDAWYNVIDDVDPHYLKHFKEFMGAQRDWQSNTKYGKPIQIKGGIPTIFLCNPGPTSSYREYLDEEKNAPLKAWAIKNATFVTLHEPLFTGTHQGPTPSSQEEGNQT

NCBI Accession YP_009506552.1
Location 2155-2457
Gene Name C4
Protein Name C4 protein
Coding Region ATGGGGAACCTCATCTGCATGCCCTCATCCAATTCGAGGGTAAAATCACGGTTACGAACAATCGCCTCTTCGATTGTTCACACCCAAGCTGTAGCACCAGTTTCCACCCCAACATACAAGGTGCTAAGTCCAGTTCAGATGTCAATTCCTATCTGGATAAGGACGGAGACACCATCGAATGGGGAGAGTTTCAGATCGATGGACGATCTGCAAGGGGTGGGCAACAGTCAGCCAACGACGCTTACGCAAAGGCACTTAACTCAGGAAGTAAGTCGGAGGCTCTTAGAGTCCTTAGAGAATTAG
Protein Sequence MGNLICMPSSNSRVKSRLRTIASSIVHTQAVAPVSTPTYKVLSPVQMSIPIWIRTETPSNGESFRSMDDLQGVGNSQPTTLTQRHLTQEVSRRLLESLEN